fold-grammars

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Branches

Name Last Modified Last Commit
master 2023-12-15 06:44:24 UTC
Merge pull request #69 from jlab/extend_checkpoint_runtime

Author: Stefan Janssen
Author Date: 2023-12-15 06:44:24 UTC

Merge pull request #69 from jlab/extend_checkpoint_runtime

use longer input to let process run long enough to dump checkpoints. …
extend_checkpoint_runtime 2023-12-14 21:51:54 UTC
use longer input to let process run long enough to dump checkpoints. Must be ...

Author: Stefan Janssen
Author Date: 2023-12-14 21:51:54 UTC

use longer input to let process run long enough to dump checkpoints. Must be >1 sec
sjanssen2-patch-1 2023-12-14 19:58:20 UTC
trigger master action

Author: Stefan Janssen
Author Date: 2023-12-14 19:58:20 UTC

trigger master action
outside_grammar 2023-07-06 20:28:22 UTC
Update c-cpp.yml

Author: Stefan Janssen
Author Date: 2023-07-06 20:28:22 UTC

Update c-cpp.yml
nosubseq_answer_macrostate_mfe 2023-03-24 17:31:36 UTC
add serialize methods for macrostate types

Author: Fynn Muermanns
Author Date: 2023-03-24 17:31:36 UTC

add serialize methods for macrostate types
lint_extension_files 2023-03-10 12:35:48 UTC
typo

Author: Fynn Muermanns
Author Date: 2023-03-10 12:35:48 UTC

typo
lint_additional_files 2023-03-09 10:00:16 UTC
Merge branch 'master' into lint_additional_files

Author: Fynn Muermanns
Author Date: 2023-03-09 10:00:16 UTC

Merge branch 'master' into lint_additional_files
add_checkpoint_support 2023-03-06 20:43:40 UTC
add 2 tests

Author: Fynn Muermanns
Author Date: 2023-03-06 20:43:40 UTC

add 2 tests
gquadruplexes 2023-03-02 14:37:14 UTC
sampling operates on different grammar, which still parses same search space

Author: Stefan Janssen
Author Date: 2023-03-02 14:37:14 UTC

sampling operates on different grammar, which still parses same search space
add_checkpointing_opts 2023-01-11 11:05:24 UTC
forgot colon here

Author: Fynn Muermanns
Author Date: 2023-01-11 11:05:24 UTC

forgot colon here
precalc_probing_base_scores 2022-12-11 14:09:57 UTC
Merge pull request #57 from jlab/update_truth

Author: =?utf-8?q?Fynn_M=C3=BCrmanns?=
Author Date: 2022-12-11 14:09:57 UTC

Merge pull request #57 from jlab/update_truth

updated truth file
update_truth 2022-12-08 14:11:26 UTC
updated truth file

Author: Stefan Janssen
Author Date: 2022-12-08 14:11:26 UTC

updated truth file
static_vs_inline 2022-12-05 11:52:03 UTC
declare functions that don't need to be visible as static; only calculate off...

Author: Fynn Muermanns
Author Date: 2022-12-04 13:55:43 UTC

declare functions that don't need to be visible as static; only calculate offset idx when offset == true
avoid_probing_strcmp 2022-11-18 16:56:10 UTC
misunderstood this piece of code; back to old implementation

Author: Fynn Muermanns
Author Date: 2022-11-18 15:26:58 UTC

misunderstood this piece of code; back to old implementation
probingSpeedup 2022-10-20 11:31:27 UTC
move offset array allocation to avoid unnecessary copying

Author: Fynn Muermanns
Author Date: 2022-10-20 11:31:27 UTC

move offset array allocation to avoid unnecessary copying
enh_cpplint 2022-10-18 11:38:30 UTC
use later version of github action

Author: Stefan Janssen
Author Date: 2022-10-18 11:38:30 UTC

use later version of github action
add_probing_to_makefile 2022-03-27 18:31:56 UTC
added tests for instance probingmfepp

Author: Jasmin Walter
Author Date: 2022-03-27 18:31:56 UTC

added tests for instance probingmfepp
rnahybrid_probing_jasmin 2022-03-07 08:49:00 UTC
fix: freeing of allocated space

Author: Jasmin Walter
Author Date: 2022-03-07 08:49:00 UTC

fix: freeing of allocated space
multiDebian 2022-03-02 11:14:00 UTC
lower gapc version number

Author: Stefan Janssen
Author Date: 2022-03-02 11:14:00 UTC

lower gapc version number
rnahybrid_probing 2022-03-01 13:50:19 UTC
adjust sequence seperator in probing data file

Author: kmaibach
Author Date: 2022-03-01 13:50:19 UTC

adjust sequence seperator in probing data file
python 2022-02-22 19:45:47 UTC
Merge pull request #49 from jlab/python_helper

Author: Stefan Janssen
Author Date: 2022-02-22 19:45:47 UTC

Merge pull request #49 from jlab/python_helper

Python helper
rnahybrid_2021 2022-02-04 15:48:39 UTC
Merge pull request #45 from jlab/rnahybrid_mde_computation

Author: Stefan Janssen
Author Date: 2022-02-04 15:48:39 UTC

Merge pull request #45 from jlab/rnahybrid_mde_computation

RNAhybrid mde computation
rnahybrid_mde_computation 2022-02-03 14:57:15 UTC
adding a rudimentary test for RNAhybrid mde computation

Author: Stefan Janssen
Author Date: 2022-02-03 14:57:15 UTC

adding a rudimentary test for RNAhybrid mde computation
rm_dupl_probingfilename 2022-02-03 09:31:46 UTC
removing a duplicate ill defined function

Author: Stefan Janssen
Author Date: 2022-02-03 09:31:46 UTC

removing a duplicate ill defined function
fix_impossibleBPprobs 2022-02-02 07:50:20 UTC
Merge branch 'master' into fix_impossibleBPprobs

Author: Stefan Janssen
Author Date: 2022-02-02 07:50:20 UTC

Merge branch 'master' into fix_impossibleBPprobs
gapc_explicit 2022-02-01 14:12:31 UTC
Merge branch 'master' into gapc_explicit

Author: Stefan Janssen
Author Date: 2022-02-01 14:12:31 UTC

Merge branch 'master' into gapc_explicit
probing_avoid_implicitcast 2022-01-25 14:09:22 UTC
also cast last HUGE_VAL occurence

Author: Stefan Janssen
Author Date: 2022-01-25 14:09:22 UTC

also cast last HUGE_VAL occurence
adt_include_guard 2022-01-24 12:13:22 UTC
adapt include guard for rna options - as will happen in gapc

Author: Stefan Janssen
Author Date: 2022-01-24 12:13:22 UTC

adapt include guard for rna options - as will happen in gapc
fix_max_energy_deviation 2022-01-06 10:06:04 UTC
also execute tests on branch rnahybrid_2021

Author: Stefan Janssen
Author Date: 2022-01-06 10:06:04 UTC

also execute tests on branch rnahybrid_2021
abstract 2021-11-04 15:30:13 UTC
Merge branch 'master' into abstract

Author: Stefan Janssen
Author Date: 2021-11-04 15:30:13 UTC

Merge branch 'master' into abstract
fix_kif 2021-11-04 14:29:06 UTC
reflecting changes in version bump + adding changelog file

Author: Stefan Janssen
Author Date: 2021-11-04 14:29:06 UTC

reflecting changes in version bump + adding changelog file
cofold_multi 2021-04-14 09:03:02 UTC
Merge branch 'master' into cofold_multi

Author: Stefan Janssen
Author Date: 2021-04-14 09:03:02 UTC

Merge branch 'master' into cofold_multi
cofold 2021-02-08 10:34:44 UTC
remove BigInt dependency

Author: Stefan Janssen
Author Date: 2021-02-08 10:34:44 UTC

remove BigInt dependency
test_codestyle 2020-07-07 14:03:45 UTC
test gen_parser2 branch

Author: Stefan Janssen
Author Date: 2020-07-07 14:03:45 UTC

test gen_parser2 branch
test_codestyle_rtlib 2020-06-15 07:28:16 UTC
revert tests

Author: Stefan Janssen
Author Date: 2020-06-15 07:28:16 UTC

revert tests
reactivate_oldtests 2020-03-31 14:49:50 UTC
Merge branch 'travis_testing' into reactivate_oldtests

Author: kmaibach
Author Date: 2020-03-31 14:49:50 UTC

Merge branch 'travis_testing' into reactivate_oldtests
pseudouridine 2020-01-17 14:57:14 UTC
adding Jolley2016 test cases

Author: Stefan Janssen
Author Date: 2020-01-17 14:57:14 UTC

adding Jolley2016 test cases
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