gquadruplexes : lp:fold-grammars : Git : Code : fold-grammars

Get this branch:: git clone -b gquadruplexes https://git.launchpad.net/fold-grammars

Branch information

757be31... by Stefan Janssen on 2023-03-02: sampling operates on different grammar, which still parses same search space
08bdc0c... by Stefan Janssen on 2023-03-02: add version for eval in alignment mode
671c00c... by Stefan Janssen on 2023-03-02: allow to provide a cache directory for generated TDM binaries
c09c7d6... by Stefan Janssen on 2023-03-02: better escape filepath to prevent issues with whitespaces, ...
4152912... by Stefan Janssen on 2023-03-02: integrated --gquad switch into RNAshapes application
a9f0f91... by Stefan Janssen on 2023-03-02: I decided to redefine the shape representation of G when nested from "G" to "[G]" on ALL levels
30fadb2... by Stefan Janssen on 2023-03-01: grammars changed due to addition of gquad option, which is deactivated via cmd-filter. Thus, sampling uses different alternatives but operates on the same seach space, which you can see from identical pfunc values
c1b66bd... by Stefan Janssen on 2023-03-01: also defining gquad filter for eval grammars
87c1e0e... by Stefan Janssen on 2023-03-01: re-added hairpin rule, since it is no longer in basic
110f05a... by Stefan Janssen on 2023-03-01: forgot to add cmd flag

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