lp:~simon-funke/fluidity/wetting_and_drying_paper

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3560. By Simon Funke on 2011-08-17

the updated monai valley configuration

3559. By Simon Funke on 2011-08-14

monai valley contour plotting scripts

3558. By Lawrence Mitchell on 2011-08-11

buildsystem: Move version definition out of include/confdefs.h

Setting the version number of Fluidity during configure is the wrong
thing to do, and writing it into include/confdefs.h doubly so.
Instead, add a new rule to the top-level Makefile to generate
include/version.h. If you need to know __FLUIDITY_VERSION__ you must
now explicitly include version.h as well confdefs.h.

While we're at it, remove any last vestiges of svnversion from the
configure scripts.

3557. By Tim Bond on 2011-08-12

Description of the Change from Patrick:

  Extensions to the python-state system to expose CSR matrices.

  User code can access CSR matrices like:

  m = state.csr_matrices['PressureMeshMassMatrix']

  The interface is quite extensive, as it subclasses scipy.sparse.csr_matrix. So
  you can do almost anything with it: multiply it by a vector (m * field.val),
  solve mu = b (scipy.sparse.linalg.spsolve), etc.

  This code was written by Nan Mao; I just cleaned it up and prepared it for
  merging.

  Note that it only exposes CSR matrices that happened to exist in state when it
  was passed to calculate_diagnostic_fields. In many cases, that appears to be
  precisely 0. One can test this by adding a call to

  get_mass_matrix(state, velocity_mesh)

  just before the call to calculate_diagnostic_variables. When this is merged, I
  will investigate the lifecycle of the CSR matrices in state so that there is
  actually data to expose.

3556. By Stephan Kramer on 2011-08-11

Bug-fix in interpolation manager for periodic meshes. This fixes bug https://bugs.launchpad.net/fluidity/+bug/822355 reported by Flora.

3555. By Lawrence Mitchell on 2011-08-11

Fix invalid element in adaptivity_options schema

Relax-NG doesn't allow mixing string and data in a single group in an
element, so don't do it.

3554. By Tim Bond on 2011-08-10

Reverting 3553; this fixes 4.6 but breaks Intel 10, and the latter is more
important to us at the moment.

3553. By Tim Bond on 2011-08-10

Small bufix targetting bug:

   https://bugs.launchpad.net/fluidity/+bug/823966

swapping the order of the parmetis and zoltan checks in configure.in
to fix a linking bug using gcc 4.6 on oneiric.

3552. By Cian Wilson on 2011-08-09

Bugfix pointed out by hhiester. cv_stats were not parallel safe.

3551. By Jon Hill on 2011-08-08

Fix for the failing flredecomp test. Probably better ways to fix this long term, but this will suffice for now