Merge lp:~fluidity-core/fluidity/remove-unused-tests-for-4.1.1 into lp:fluidity

[Tim Bond]

This merge will remove all the tests marked 'special' and all the tests which don't have .xml files from the trunk.

[Jon Hill (jon-hill)]

Still waiting on the diff, but a look through the changes committed seems to be OK. It matches what was discussed in the bug report 894770.

It's probably worth sending a note around listing the removed tests, and the last revision so people can get the test back, fix it and merge it back into trunk

review: Approve

[Jonathan Bull (j-bull08)]

The backward_facing_step_3d test can be removed; it's now redundant because of the example. It didn't test anything anyway.

=== removed directory 'tests/2d_periodic_p1p1_streamfunction'
=== removed file 'tests/2d_periodic_p1p1_streamfunction/2d_nonperiodic_p1p1_streamfunction.flml'
--- tests/2d_periodic_p1p1_streamfunction/2d_nonperiodic_p1p1_streamfunction.flml	2010-11-21 15:41:35 +0000
+++ tests/2d_periodic_p1p1_streamfunction/2d_nonperiodic_p1p1_streamfunction.flml	1970-01-01 00:00:00 +0000
@@ -1,159 +0,0 @@
-<?xml version='1.0' encoding='utf-8'?>
-<fluidity_options>
-  <simulation_name>
-    <string_value lines="1">2d_nonperiodic_p1p1_streamfunction</string_value>
-  </simulation_name>
-  <problem_type>
-    <string_value lines="1">fluids</string_value>
-  </problem_type>
-  <geometry>
-    <dimension>
-      <integer_value rank="0">2</integer_value>
-    </dimension>
-    <mesh name="CoordinateMesh">
-      <from_file file_name="2d_square">
-        <format name="triangle"/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-      </from_file>
-    </mesh>
-    <mesh name="VelocityMesh">
-      <from_mesh>
-        <mesh name="CoordinateMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="PressureMesh">
-      <from_mesh>
-        <mesh name="CoordinateMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <quadrature>
-      <degree>
-        <integer_value rank="0">4</integer_value>
-      </degree>
-    </quadrature>
-  </geometry>
-  <io>
-    <dump_format>
-      <string_value>vtk</string_value>
-    </dump_format>
-    <dump_period>
-      <constant>
-        <real_value rank="0">1e27</real_value>
-      </constant>
-    </dump_period>
-    <output_mesh name="CoordinateMesh"/>
-    <stat/>
-  </io>
-  <timestepping>
-    <current_time>
-      <real_value rank="0">0.0</real_value>
-    </current_time>
-    <timestep>
-      <real_value rank="0">1</real_value>
-    </timestep>
-    <finish_time>
-      <real_value rank="0">20</real_value>
-    </finish_time>
-    <nonlinear_iterations>
-      <integer_value rank="0">2</integer_value>
-    </nonlinear_iterations>
-  </timestepping>
-  <physical_parameters/>
-  <material_phase name="water">
-    <equation_of_state>
-      <fluids>
-        <linear>
-          <reference_density>
-            <real_value rank="0">1.0</real_value>
-          </reference_density>
-        </linear>
-      </fluids>
-    </equation_of_state>
-    <vector_field name="Velocity" rank="1">
-      <prescribed>
-        <mesh name="VelocityMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-  return [X[1], 0.0]</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </vector_field>
-    <scalar_field depends="Velocity" name="MultiplyConnectedStreamFunction" rank="0">
-      <prognostic>
-        <mesh name="VelocityMesh"/>
-        <solver>
-          <iterative_method name="gmres">
-            <restart>
-              <integer_value rank="0">30</integer_value>
-            </restart>
-          </iterative_method>
-          <preconditioner name="sor"/>
-          <relative_error>
-            <real_value rank="0">1e-7</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">3000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <boundary_conditions name="bottom">
-          <surface_ids>
-            <integer_value shape="1" rank="1">7</integer_value>
-          </surface_ids>
-          <primary_boundary/>
-          <type name="dirichlet">
-            <internally_calculated/>
-          </type>
-        </boundary_conditions>
-        <boundary_conditions name="top">
-          <surface_ids>
-            <integer_value shape="1" rank="1">9</integer_value>
-          </surface_ids>
-          <secondary_boundary>
-            <primary_point>
-              <real_value shape="2" dim1="dim" rank="1">0.5 0.0</real_value>
-            </primary_point>
-            <secondary_point>
-              <real_value shape="2" dim1="dim" rank="1">0.5 1.0</real_value>
-            </secondary_point>
-          </secondary_boundary>
-          <type name="dirichlet">
-            <internally_calculated/>
-          </type>
-        </boundary_conditions>
-        <exclude_from_checkpointing/>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat/>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <no_interpolation/>
-      </prognostic>
-    </scalar_field>
-  </material_phase>
-</fluidity_options>

=== removed file 'tests/2d_periodic_p1p1_streamfunction/2d_periodic_p1p1_streamfunction.flml'
--- tests/2d_periodic_p1p1_streamfunction/2d_periodic_p1p1_streamfunction.flml	2010-11-21 15:41:35 +0000
+++ tests/2d_periodic_p1p1_streamfunction/2d_periodic_p1p1_streamfunction.flml	1970-01-01 00:00:00 +0000
@@ -1,204 +0,0 @@
-<?xml version='1.0' encoding='utf-8'?>
-<fluidity_options>
-  <simulation_name>
-    <string_value lines="1">2d_periodic_p1p1_streamfunction</string_value>
-  </simulation_name>
-  <problem_type>
-    <string_value lines="1">fluids</string_value>
-  </problem_type>
-  <geometry>
-    <dimension>
-      <integer_value rank="0">2</integer_value>
-    </dimension>
-    <mesh name="CoordinateMesh">
-      <from_mesh>
-        <mesh name="periodic_boundaries"/>
-        <periodic_boundary_conditions name="east_west">
-          <physical_boundary_ids>
-            <integer_value shape="1" rank="1">10</integer_value>
-          </physical_boundary_ids>
-          <aliased_boundary_ids>
-            <integer_value shape="1" rank="1">8</integer_value>
-          </aliased_boundary_ids>
-          <coordinate_map>
-            <string_value lines="20" type="python">def val(x,t):
-	return [x[0]-1,x[1]]</string_value>
-          </coordinate_map>
-          <inverse_coordinate_map>
-            <string_value lines="20" type="python">def val(x,t):
-	return [x[0]+1,x[1]]</string_value>
-          </inverse_coordinate_map>
-          <remove_periodicity/>
-        </periodic_boundary_conditions>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="VelocityMesh">
-      <from_mesh>
-        <mesh name="periodic_boundaries"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="PressureMesh">
-      <from_mesh>
-        <mesh name="periodic_boundaries"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="2D_mesh">
-      <from_file file_name="2d_square">
-        <format name="triangle"/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-      </from_file>
-    </mesh>
-    <mesh name="periodic_boundaries">
-      <from_mesh>
-        <mesh name="2D_mesh"/>
-        <periodic_boundary_conditions name="east_west">
-          <physical_boundary_ids>
-            <integer_value shape="1" rank="1">10</integer_value>
-          </physical_boundary_ids>
-          <aliased_boundary_ids>
-            <integer_value shape="1" rank="1">8</integer_value>
-          </aliased_boundary_ids>
-          <coordinate_map>
-            <string_value lines="20" type="python">def val(x,t):
-	return [x[0]-1,x[1]]</string_value>
-          </coordinate_map>
-        </periodic_boundary_conditions>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <quadrature>
-      <degree>
-        <integer_value rank="0">4</integer_value>
-      </degree>
-    </quadrature>
-  </geometry>
-  <io>
-    <dump_format>
-      <string_value>vtk</string_value>
-    </dump_format>
-    <dump_period>
-      <constant>
-        <real_value rank="0">1e27</real_value>
-      </constant>
-    </dump_period>
-    <output_mesh name="CoordinateMesh"/>
-    <stat/>
-  </io>
-  <timestepping>
-    <current_time>
-      <real_value rank="0">0.0</real_value>
-    </current_time>
-    <timestep>
-      <real_value rank="0">1</real_value>
-    </timestep>
-    <finish_time>
-      <real_value rank="0">20</real_value>
-    </finish_time>
-    <nonlinear_iterations>
-      <integer_value rank="0">2</integer_value>
-    </nonlinear_iterations>
-  </timestepping>
-  <physical_parameters/>
-  <material_phase name="water">
-    <equation_of_state>
-      <fluids>
-        <linear>
-          <reference_density>
-            <real_value rank="0">1.0</real_value>
-          </reference_density>
-        </linear>
-      </fluids>
-    </equation_of_state>
-    <vector_field name="Velocity" rank="1">
-      <prescribed>
-        <mesh name="VelocityMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-  return [X[1], 0.0]</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </vector_field>
-    <scalar_field depends="Velocity" name="MultiplyConnectedStreamFunction" rank="0">
-      <prognostic>
-        <mesh name="VelocityMesh"/>
-        <solver>
-          <iterative_method name="gmres">
-            <restart>
-              <integer_value rank="0">30</integer_value>
-            </restart>
-          </iterative_method>
-          <preconditioner name="sor"/>
-          <relative_error>
-            <real_value rank="0">1e-7</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">3000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <boundary_conditions name="bottom">
-          <surface_ids>
-            <integer_value shape="1" rank="1">7</integer_value>
-          </surface_ids>
-          <primary_boundary/>
-          <type name="dirichlet">
-            <internally_calculated/>
-          </type>
-        </boundary_conditions>
-        <boundary_conditions name="top">
-          <surface_ids>
-            <integer_value shape="1" rank="1">9</integer_value>
-          </surface_ids>
-          <secondary_boundary>
-            <primary_point>
-              <real_value shape="2" dim1="dim" rank="1">0.5 0.0</real_value>
-            </primary_point>
-            <secondary_point>
-              <real_value shape="2" dim1="dim" rank="1">0.5 1.0</real_value>
-            </secondary_point>
-          </secondary_boundary>
-          <type name="dirichlet">
-            <internally_calculated/>
-          </type>
-        </boundary_conditions>
-        <exclude_from_checkpointing/>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat/>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <no_interpolation/>
-      </prognostic>
-    </scalar_field>
-  </material_phase>
-</fluidity_options>

=== removed file 'tests/2d_periodic_p1p1_streamfunction/2d_periodic_p1p1_streamfunction.xml'
--- tests/2d_periodic_p1p1_streamfunction/2d_periodic_p1p1_streamfunction.xml	2011-10-21 10:05:25 +0000
+++ tests/2d_periodic_p1p1_streamfunction/2d_periodic_p1p1_streamfunction.xml	1970-01-01 00:00:00 +0000
@@ -1,106 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-
-<testproblem>
-  <name>Periodic channel with streamfunction diagnostic check get correct boundary condition</name>
-  <owner userid="amcvicar"/>
-  <tags>flml zoltan parallel</tags>
-  <problem_definition length="special" nprocs="1">
-    <command_line> ../../bin/fluidity -v3 -l  2d_periodic_p1p1_streamfunction.flml &amp;&amp;
-    ../../bin/fluidity -v3 -l  2d_nonperiodic_p1p1_streamfunction.flml &amp;&amp; 
-    mpiexec -np 4  ../../bin/fluidity -v3 -l  2d_periodic_p1p1_streamfunction_periodised_flredecomp.flml </command_line>
-  </problem_definition>
-  <variables>
-        <variable name="analytical_solution" language="python">
-# compute analytical solution
-import numpy
-u_bottom = 0.0
-u_top = 1.0
-#divisions=12.0
-#y=numpy.arange(0,(1+(u_top/divisions)),(u_top/divisions))
-#velocity is a function of y
-#x=[]
-#for i in y:
-#  x.append((i**2)/2)
-analytical_solution=float((u_top**2.0)/2.0)
-    </variable>
-
-    <variable name="numerical_solution_periodic" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-from numpy import array
-# read in the .vtu
-data=vtktools.vtu("2d_periodic_p1p1_streamfunction_1.vtu")
-SF=data.GetField('MultiplyConnectedStreamFunction');
-numerical_solution_periodic=[0,0,0]
-numerical_solution_periodic[0]=max(abs(array(SF[:,0])));
-numerical_solution_periodic[1]=min((array(SF[:,0])));
-
-#final change in streamfunction
-#numerical_solution_periodic[2]=stat("2d_periodic_p1p1_streamfunction.stat")["water"]["MultiplyConnectedStreamFunction"]["l2norm"][-1]
-dt = stat("2d_periodic_p1p1_streamfunction.stat")["dt"]["value"][-1]
-numerical_solution_periodic[2] = max(abs(data.GetScalarField("MultiplyConnectedStreamFunction")-data.GetScalarField("OldMultiplyConnectedStreamFunction"))/dt)
-
-    </variable>
-    <variable name="numerical_solution_nonperiodic" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-from numpy import array
-# read in the .vtu
-data=vtktools.vtu("2d_nonperiodic_p1p1_streamfunction_1.vtu")
-SF=data.GetField('MultiplyConnectedStreamFunction');
-numerical_solution_nonperiodic=[0,0,0]
-numerical_solution_nonperiodic[0]=max(abs(array(SF[:,0])));
-numerical_solution_nonperiodic[1]=min((array(SF[:,0])));
-
-#final change in streamfunction
-#numerical_solution_nonperiodic[2]=stat("2d_nonperiodic_p1p1_streamfunction.stat")["water"]["MultiplyConnectedStreamFunction"]["l2norm"][-1]
-dt = stat("2d_nonperiodic_p1p1_streamfunction.stat")["dt"]["value"][-1]
-numerical_solution_nonperiodic[2] = max(abs(data.GetScalarField("MultiplyConnectedStreamFunction")-data.GetScalarField("OldMultiplyConnectedStreamFunction"))/dt)
-
-    </variable>
-
-    <variable name="numerical_solution_periodic_parallel" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-from numpy import array
-# read in the .vtu
-data=vtktools.vtu("2d_periodic_p1p1_streamfunction_parallel_1.pvtu")
-SF=data.GetField('MultiplyConnectedStreamFunction');
-numerical_solution_periodic_parallel=[0,0,0]
-numerical_solution_periodic_parallel[0]=max(abs(array(SF[:,0])));
-numerical_solution_periodic_parallel[1]=min((array(SF[:,0])));
-
-#final change in streamfunction
-#numerical_solution_periodic_parallel[2]=stat("2d_periodic_p1p1_streamfunction_parallel.stat")["water"]["MultiplyConnectedStreamFunction"]["l2norm"][-1]
-dt = stat("2d_periodic_p1p1_streamfunction_parallel.stat")["dt"]["value"][-1]
-numerical_solution_periodic_parallel[2] = max(abs(data.GetScalarField("MultiplyConnectedStreamFunction")-data.GetScalarField("OldMultiplyConnectedStreamFunction"))/dt)
-
-    </variable>
-
-  </variables>
-  <pass_tests>
-    <test name="Compare max error of nonperiodic with analytical solution" language="python">
-    assert abs(numerical_solution_periodic[0]-analytical_solution) &lt; 1e-6</test>
-    <test name="Compare min error of periodic " language="python">
-    assert abs(numerical_solution_periodic[1]) &lt; 1e-6 </test>
-    <test name="Compare L2norm of periodic" language="python">
-    assert abs(numerical_solution_periodic[2]) &lt; 1e-6 </test>
-    
-    <test name="Compare max error of nonperiodic with analytical solution" language="python">
-    assert abs(numerical_solution_nonperiodic[0]-analytical_solution) &lt; 1e-6</test>
-    <test name="Compare min error of nonperiodic " language="python">
-    assert abs(numerical_solution_nonperiodic[1]) &lt; 1e-6 </test>
-    <test name="Compare L2norm of nonperiodic" language="python">
-    assert abs(numerical_solution_nonperiodic[2]) &lt; 1e-6 </test>
-    
-    <test name="Compare max error of periodic parallel with analytical solution" language="python">
-    assert abs(numerical_solution_periodic_parallel[0]-analytical_solution) &lt; 1e-6</test>
-    <test name="Compare min error of periodic parallel" language="python">
-    assert abs(numerical_solution_periodic_parallel[1]) &lt; 1e-6 </test>
-    <test name="Compare L2norm of periodic parallel" language="python">
-    assert abs(numerical_solution_periodic_parallel[2]) &lt; 1e-6 </test>
-    
-  </pass_tests>
-  <warn_tests>
-  </warn_tests>
-</testproblem>

=== removed file 'tests/2d_periodic_p1p1_streamfunction/Makefile'
--- tests/2d_periodic_p1p1_streamfunction/Makefile	2011-10-21 10:05:25 +0000
+++ tests/2d_periodic_p1p1_streamfunction/Makefile	1970-01-01 00:00:00 +0000
@@ -1,21 +0,0 @@
-PROJECT = 2d_periodic_p1p1_streamfunction
-
-input: clean
-	gmsh -2 -o 2d_square.msh src/2d_square.geo
-	../../bin/gmsh2triangle --2d 2d_square.msh
-	
-	
-	#set up parallel run
-	../../bin/periodise 2d_periodic_p1p1_streamfunction.flml
-	mpiexec -np 4 ../../bin/flredecomp -i 1 -o 4 2d_periodic_p1p1_streamfunction_periodised 2d_periodic_p1p1_streamfunction_periodised_flredecomp
-	spud-set 2d_periodic_p1p1_streamfunction_periodised_flredecomp.flml /simulation_name 2d_periodic_p1p1_streamfunction_parallel
-
-	
-clean:
-	rm -f *.stat
-	rm -f *vtu
-	rm -f fluidity* matrixdump*
-	rm -f *.ele *.face *.node *.edge
-	rm -f *.msh
-	rm -f *halo
-	rm -f *periodise*
\ No newline at end of file

=== removed directory 'tests/2d_periodic_p1p1_streamfunction/src'
=== removed file 'tests/2d_periodic_p1p1_streamfunction/src/2d_square.geo'
--- tests/2d_periodic_p1p1_streamfunction/src/2d_square.geo	2010-06-13 13:10:46 +0000
+++ tests/2d_periodic_p1p1_streamfunction/src/2d_square.geo	1970-01-01 00:00:00 +0000
@@ -1,20 +0,0 @@
-Point(1) = {0.0,0.0,0,0.08};
-Point(2) = {1.0,0.0,0,0.08};
-Point(3) = {1.0,1.0,0,0.08};
-Point(4) = {0.0,1.0,0,0.08};
-Line(1) = {1,2};
-Line(2) = {2,3};
-Line(3) = {3,4};
-Line(4) = {4,1};
-Line Loop(5) = {2,3,4,1};
-Plane Surface(6) = {5};
-// y const
-Physical Line(7) = {1};
-// x const
-Physical Line(8) = {2};
-// y const
-Physical Line(9) = {3};
-// x const
-Physical Line(10) = {4};
-// z const
-Physical Surface(11) = {6};

=== removed directory 'tests/IGW'
=== removed file 'tests/IGW/IGW.xml'
--- tests/IGW/IGW.xml	2011-10-21 10:05:25 +0000
+++ tests/IGW/IGW.xml	1970-01-01 00:00:00 +0000
@@ -1,26 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-
-<testproblem>
-  <name>IGW</name>
-  <owner userid="colin"/>
-  <tags>flml</tags>
-  <problem_definition length="special" nprocs="1">
-    <command_line>../../bin/IGW square1 IGW.log &amp;&gt; IGW.log</command_line>
-  </problem_definition>
-  <variables>
-    <variable name="DeltaH" language="python">
-import vtktools
-start = vtktools.vtu("square1_0.vtu")
-end = vtktools.vtu("square1_1.vtu")
-DeltaH = max(start.GetScalarField("height") - end.GetScalarField("height"))
-    </variable>
-  </variables>
-  <pass_tests>
-    <!-- The height should not change -->
-    <test name="Height difference (1.0e-12)" language="python">
-assert DeltaH &lt; 1e-12
-    </test>
-  </pass_tests>
-  <warn_tests>
-  </warn_tests>
-</testproblem>

=== removed file 'tests/IGW/Makefile'
--- tests/IGW/Makefile	2011-10-21 10:05:25 +0000
+++ tests/IGW/Makefile	1970-01-01 00:00:00 +0000
@@ -1,8 +0,0 @@
-default: input
-
-input: clean
-	gmsh -2 square.geo > gmsh.log 2> gmsh_err.log
-	../../bin/gmsh2triangle -2 square.msh
-
-clean:
-	rm -f *.ele *.edge *.face *.node *.vtu *.s *.stat *.log *.msh

=== removed file 'tests/IGW/basin.dat'
--- tests/IGW/basin.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/basin.dat	1970-01-01 00:00:00 +0000
@@ -1,3 +0,0 @@
-&IGW_data tmax=10.0, tdump=1.0, dt=0.01, fr=1.0, ro=0.1, u_degree=1,
-h_degree=2,u_cty=-1,steady_state=F, mesh="basin",
-u_input="basin_u.py", h_input="basin_h.py", get_streamfunction=F/
\ No newline at end of file

=== removed file 'tests/IGW/basin.geo'
--- tests/IGW/basin.geo	2009-12-16 14:11:47 +0000
+++ tests/IGW/basin.geo	1970-01-01 00:00:00 +0000
@@ -1,9 +0,0 @@
-Point(1) = {2e5,0,0,1e4};
-Point(2) = {0,0,0,1e4};
-Point(3) = {-2e5,0,0,1e4};
-Circle(1) = {1,2,3};
-Circle(2) = {3,2,1};
-Physical Line(3) = {1,2};
-Line Loop(4) = {1,2};
-Plane Surface(5) = {4};
-Physical Surface(6) = {5};

=== removed file 'tests/IGW/basin_h.py'
--- tests/IGW/basin_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/basin_h.py	1970-01-01 00:00:00 +0000
@@ -1,8 +0,0 @@
-def val(X,t):
-   from math import exp
-   r0 = 0.5
-   r = ((X[0])**2 + (X[1]**2))**0.5
-   if(r>0.0001):
-      return exp((r-r0)/0.1)*X[0]/r
-   else:
-      return 0.0

=== removed file 'tests/IGW/basin_u.py'
--- tests/IGW/basin_u.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/basin_u.py	1970-01-01 00:00:00 +0000
@@ -1,9 +0,0 @@
-def val(X,t):
-   from math import exp
-   r0 = 0.5
-   g = [0.0,0.0]
-   r = ((X[0])**2 + (X[1])**2)**0.5
-   if(r>0.0001):
-      g[0] = -exp((r-r0)/0.1)*X[0]/r*X[1]/r
-      g[1] = exp((r-r0)/0.1)*X[0]/r*X[0]/r
-   return g
\ No newline at end of file

=== removed file 'tests/IGW/channel.1_u.py'
--- tests/IGW/channel.1_u.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/channel.1_u.py	1970-01-01 00:00:00 +0000
@@ -1,6 +0,0 @@
-def val(X,t):
-   from math import exp
-   g = [0.0,0.0]
-   g[0] = 0.0
-   g[1] = exp(-X[0]/0.1)*exp(-(X[1]-5.0)**2)
-   return g

=== removed file 'tests/IGW/channel1.dat'
--- tests/IGW/channel1.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/channel1.dat	1970-01-01 00:00:00 +0000
@@ -1,1 +0,0 @@
-&IGW_data tmax=10.0, tdump=1.0, dt=0.01, fr=1.0, ro=0.1 /
\ No newline at end of file

=== removed file 'tests/IGW/channel1_h.py'
--- tests/IGW/channel1_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/channel1_h.py	1970-01-01 00:00:00 +0000
@@ -1,3 +0,0 @@
-def val(X,t):
-   from math import exp
-   return -exp(-X[0]/0.1)*exp(-(X[1]-5.0)**2)

=== removed file 'tests/IGW/channel1_u.py'
--- tests/IGW/channel1_u.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/channel1_u.py	1970-01-01 00:00:00 +0000
@@ -1,6 +0,0 @@
-def val(X,t):
-   from math import exp
-   g = [0.0,0.0]
-   g[0] = 0.0
-   g[1] = exp(-X[0]/0.1)*exp(-(X[1]-5.0)**2)
-   return g
\ No newline at end of file

=== removed file 'tests/IGW/gauss_h.py'
--- tests/IGW/gauss_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/gauss_h.py	1970-01-01 00:00:00 +0000
@@ -1,11 +0,0 @@
-def val(X,t):
-   from math import exp, pi, cos
-   x = X[0]
-   y = X[1]
-   rsq = (X[0]-0.5)**2 + (X[1]-0.5)**2
-   r0sq = 0.3**2
-   g = exp(-rsq/r0sq)
-   if x>0.999 or x<0.001 or y>0.999 or y<0.001:
-      g = 0.0
-   
-   return g

=== removed file 'tests/IGW/kelvin.dat'
--- tests/IGW/kelvin.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/kelvin.dat	1970-01-01 00:00:00 +0000
@@ -1,5 +0,0 @@
-&IGW_data tmax=10.0, tdump=1.0, dt=0.001, fr=1.0, ro=0.1, u_degree=1,
-h_degree=2,u_cty=-1,balanced_u=F, steady_state=F, mesh="kelvin_mod",
-u_input="kelvin_u.py", h_input="kelvin_h.py", 
-exact_h_input="kelvin_h.py", get_streamfunction=F,
-projection_test=F,compute_error=F, exact_u_input="kelvin_u.py" /
\ No newline at end of file

=== removed file 'tests/IGW/kelvin.geo'
--- tests/IGW/kelvin.geo	2009-12-16 14:11:47 +0000
+++ tests/IGW/kelvin.geo	1970-01-01 00:00:00 +0000
@@ -1,12 +0,0 @@
-Point(1) = {-10,0,0,0.01};
-Point(2) = {10,0,0,0.01};
-Point(3) = {-10.0,1.0,0,0.01};
-Point(4) = {10.0,1.0,0,0.01};
-Line(1) = {1,2};
-Line(2) = {2,4};
-Line(4) = {3,1};
-Line(5) = {4,3};
-Line Loop(8) = {1,2,4,5};
-
-Plane Surface(9) = {8};
-Physical Surface(10) = {9};

=== removed file 'tests/IGW/kelvin_h.py'
--- tests/IGW/kelvin_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/kelvin_h.py	1970-01-01 00:00:00 +0000
@@ -1,5 +0,0 @@
-def val(X,t):
-   from math import exp
-   X0 = 5.0 - t
-   sig = 1.0
-   return exp(-X[1]/0.1)*exp(-(X[0]-X0)**2/(sig*sig))

=== removed file 'tests/IGW/kelvin_mod.geo'
--- tests/IGW/kelvin_mod.geo	2009-12-16 14:11:47 +0000
+++ tests/IGW/kelvin_mod.geo	1970-01-01 00:00:00 +0000
@@ -1,23 +0,0 @@
-Point(1) = {-15,0,0,2.0};
-Point(2) = {15,0,0,2.0};
-Point(3) = {-15.0,3.0,0,2.0};
-Point(4) = {15.0,3.0,0,2.0};
-Point(5) = {-8,0,0,0.15};
-Point(6) = {8,0,0,0.15};
-Point(7) = {-8,0.6,0,0.15};
-Point(8) = {8,0.6,0,0.15};
-Line(1) = {1,5};
-Line(2) = {6,5};
-Line(3) = {6,2};
-Line(4) = {2,4};
-Line(5) = {4,3};
-Line(6) = {3,1};
-Line(7) = {5,7};
-Line(8) = {7,8};
-Line(9) = {8,6};
-Line Loop(10) = {5,6,1,7,8,9,3,4};
-Line Loop(11) = {8,9,2,7};
-Plane Surface(12) = {11};
-Plane Surface(13) = {10};
-Physical Line(14) = {5,6,1,2,3,4};
-Physical Surface(15) = {13,12};

=== removed file 'tests/IGW/kelvin_u.py'
--- tests/IGW/kelvin_u.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/kelvin_u.py	1970-01-01 00:00:00 +0000
@@ -1,7 +0,0 @@
-def val(X,t):
-   from math import exp
-   X0 = 5.0 - t
-   sig = 1.0
-   g = [0.0,0.0]
-   g[0] = exp(-X[1]/0.1)*exp(-(X[0]-X0)**2/(sig*sig))
-   return g

=== removed file 'tests/IGW/rand_h.py'
--- tests/IGW/rand_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/rand_h.py	1970-01-01 00:00:00 +0000
@@ -1,11 +0,0 @@
-def val(X,t):
-   from random import random
-
-   x = X[0]
-   y = X[1]
-   
-   g = random()
-   if x>0.999 or x<0.001 or y>0.999 or y<0.001:
-      g = 0.0
-   
-   return g

=== removed file 'tests/IGW/sin_h.py'
--- tests/IGW/sin_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/sin_h.py	1970-01-01 00:00:00 +0000
@@ -1,3 +0,0 @@
-def val(X,t):
-   from math import sin, pi
-   return sin(pi*X[0])*sin(pi*X[1])

=== removed file 'tests/IGW/square.geo'
--- tests/IGW/square.geo	2009-12-16 14:11:47 +0000
+++ tests/IGW/square.geo	1970-01-01 00:00:00 +0000
@@ -1,12 +0,0 @@
-Point(1) = {0,0,0,0.1};
-Point(2) = {1,0,0,0.1};
-Point(3) = {1,1,0,0.1};
-Point(4) = {0,1,0,0.1};
-Line(1) = {1,2};
-Line(2) = {2,3};
-Line(3) = {3,4};
-Line(4) = {4,1};
-Physical Line(5) = {4,3,2,1};
-Line Loop(6) = {3,4,1,2};
-Plane Surface(7) = {6};
-Physical Surface(8) = {7};

=== removed file 'tests/IGW/square1.dat'
--- tests/IGW/square1.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/square1.dat	1970-01-01 00:00:00 +0000
@@ -1,4 +0,0 @@
-&IGW_data tmax=10.01, tdump=10.0, dt=0.01, fr=1.0, ro=0.1, u_degree=1,
-h_degree=2,u_cty=-1,balanced_u=T,steady_state=T, mesh="square",
-u_input="square1_u.py", h_input="rand_h.py", get_streamfunction=F,
-projection_test=F, compute_error=F/
\ No newline at end of file

=== removed file 'tests/IGW/square1_h.py'
--- tests/IGW/square1_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/square1_h.py	1970-01-01 00:00:00 +0000
@@ -1,6 +0,0 @@
-def val(X,t):
-   from random import random
-   if X[0]<0.0001 or X[0]>0.9999 or X[1]<0.0001 or X[1]>0.9999:
-      return 0.0
-   else:
-      return random()

=== removed file 'tests/IGW/square1_u.py'
--- tests/IGW/square1_u.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/square1_u.py	1970-01-01 00:00:00 +0000
@@ -1,9 +0,0 @@
-def val(X,t):
-   from math import exp
-   print "Hello, world"
-   x = X[0]
-   y = X[1]
-   g = [None, None]
-   g[0] =  0.555555555556*(y - 0.5)*exp(2.77777777778*(-(y - 0.5)**2 - (x - 0.5)**2))
-   g[1] = -0.555555555556*(x - 0.5)*exp(2.77777777778*(-(y - 0.5)**2 - (x - 0.5)**2))
-   return g

=== removed file 'tests/IGW/square_rnd_h.py'
--- tests/IGW/square_rnd_h.py	2009-12-16 14:11:47 +0000
+++ tests/IGW/square_rnd_h.py	1970-01-01 00:00:00 +0000
@@ -1,6 +0,0 @@
-def val(X,t):
-   from random import random
-   if X[0]<0.0001 or X[0]>0.9999 or X[1]<0.0001 or X[1]>0.9999:
-      return 0.0
-   else:
-      return random()

=== removed file 'tests/IGW/square_sin.dat'
--- tests/IGW/square_sin.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/square_sin.dat	1970-01-01 00:00:00 +0000
@@ -1,3 +0,0 @@
-&IGW_data tmax=1.0, tdump=0.1, dt=0.01, fr=1.0, ro=0.1, u_degree=1,
-h_degree=2,u_cty=-1,balanced_u=T,steady_state=T, mesh="square1",
-u_input="square1_u.py", h_input="sin_h.py" /
\ No newline at end of file

=== removed file 'tests/IGW/square_weak.dat'
--- tests/IGW/square_weak.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/square_weak.dat	1970-01-01 00:00:00 +0000
@@ -1,4 +0,0 @@
-&IGW_data tmax=0.1, tdump=0.01, dt=0.01, fr=1.0, ro=0.1, u_degree=1,
-h_degree=2,u_cty=-1,balanced_u=T,steady_state=T, mesh="square.1",
-u_input="square1_u.py", h_input="square_weak_h.py", get_streamfunction=F,
-projection_test=F, compute_error=F/

=== removed file 'tests/IGW/squarep1p1.dat'
--- tests/IGW/squarep1p1.dat	2009-12-16 14:11:47 +0000
+++ tests/IGW/squarep1p1.dat	1970-01-01 00:00:00 +0000
@@ -1,3 +0,0 @@
-&IGW_data tmax=0.02, tdump=0.01, dt=0.01, fr=1.0, ro=0.1, u_degree=1,
-h_degree=2,u_cty=0,balanced_u=T,steady_state=T, mesh="square.1",
-u_input="square1_u.py", h_input="gauss_h.py", get_streamfunction=T/
\ No newline at end of file

=== removed directory 'tests/Stokes_mms_p0p1cv'
=== removed file 'tests/Stokes_mms_p0p1cv/MMS_A.flml'
--- tests/Stokes_mms_p0p1cv/MMS_A.flml	2010-11-21 15:41:35 +0000
+++ tests/Stokes_mms_p0p1cv/MMS_A.flml	1970-01-01 00:00:00 +0000
@@ -1,478 +0,0 @@
-<?xml version='1.0' encoding='utf-8'?>
-<fluidity_options>
-  <simulation_name>
-    <string_value lines="1">MMS_A</string_value>
-  </simulation_name>
-  <problem_type>
-    <string_value lines="1">fluids</string_value>
-  </problem_type>
-  <geometry>
-    <dimension>
-      <integer_value rank="0">2</integer_value>
-    </dimension>
-    <mesh name="CoordinateMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="VelocityMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <mesh_shape>
-          <polynomial_degree>
-            <integer_value rank="0">0</integer_value>
-          </polynomial_degree>
-        </mesh_shape>
-        <mesh_continuity>
-          <string_value>discontinuous</string_value>
-        </mesh_continuity>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="PressureMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="InputMesh">
-      <from_file file_name="MMS_A">
-        <format name="triangle"/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-      </from_file>
-    </mesh>
-    <quadrature>
-      <degree>
-        <integer_value rank="0">4</integer_value>
-      </degree>
-    </quadrature>
-  </geometry>
-  <io>
-    <dump_format>
-      <string_value>vtk</string_value>
-    </dump_format>
-    <dump_period>
-      <constant>
-        <real_value rank="0">15.0</real_value>
-      </constant>
-    </dump_period>
-    <output_mesh name="VelocityMesh"/>
-    <checkpointing>
-      <checkpoint_period_in_dumps>
-        <integer_value rank="0">10000</integer_value>
-      </checkpoint_period_in_dumps>
-      <checkpoint_at_end/>
-    </checkpointing>
-    <stat/>
-  </io>
-  <timestepping>
-    <current_time>
-      <real_value rank="0">0.0</real_value>
-    </current_time>
-    <timestep>
-      <real_value rank="0">0.0072673325013204136</real_value>
-      <comment>gives a max cfl number of 0.1</comment>
-    </timestep>
-    <finish_time>
-      <real_value rank="0">10.0</real_value>
-      <comment>10.0</comment>
-    </finish_time>
-    <steady_state>
-      <tolerance>
-        <real_value rank="0">1.E-8</real_value>
-        <infinity_norm/>
-      </tolerance>
-    </steady_state>
-  </timestepping>
-  <physical_parameters/>
-  <material_phase name="NS">
-    <equation_of_state>
-      <fluids>
-        <linear>
-          <reference_density>
-            <real_value rank="0">1.0</real_value>
-          </reference_density>
-        </linear>
-      </fluids>
-    </equation_of_state>
-    <scalar_field name="Pressure" rank="0">
-      <prognostic>
-        <mesh name="PressureMesh"/>
-        <spatial_discretisation>
-          <control_volumes/>
-        </spatial_discretisation>
-        <reference_node>
-          <integer_value rank="0">1</integer_value>
-        </reference_node>
-        <scheme>
-          <poisson_pressure_solution>
-            <string_value lines="1">never</string_value>
-          </poisson_pressure_solution>
-          <use_projection_method>
-            <full_schur_complement>
-              <inner_matrix name="FullMomentumMatrix">
-                <solver>
-                  <iterative_method name="cg"/>
-                  <preconditioner name="sor"/>
-                  <relative_error>
-                    <real_value rank="0">1E-10</real_value>
-                  </relative_error>
-                  <max_iterations>
-                    <integer_value rank="0">10000</integer_value>
-                  </max_iterations>
-                  <start_from_zero/>
-                  <never_ignore_solver_failures/>
-                  <diagnostics>
-                    <monitors/>
-                  </diagnostics>
-                </solver>
-              </inner_matrix>
-              <preconditioner_matrix name="DiagonalSchurComplement"/>
-            </full_schur_complement>
-          </use_projection_method>
-        </scheme>
-        <solver>
-          <iterative_method name="fgmres"/>
-          <preconditioner name="mg"/>
-          <relative_error>
-            <real_value rank="0">1.0e-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </scalar_field>
-    <scalar_field name="Density" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="Velocity" rank="1">
-      <prognostic>
-        <mesh name="VelocityMesh"/>
-        <equation name="LinearMomentum"/>
-        <spatial_discretisation>
-          <discontinuous_galerkin>
-            <mass_terms>
-              <exclude_mass_terms/>
-            </mass_terms>
-            <viscosity_scheme>
-              <bassi_rebay/>
-            </viscosity_scheme>
-            <advection_scheme>
-              <none/>
-              <integrate_advection_by_parts>
-                <twice/>
-              </integrate_advection_by_parts>
-            </advection_scheme>
-          </discontinuous_galerkin>
-          <conservative_advection>
-            <real_value rank="0">0.0</real_value>
-          </conservative_advection>
-        </spatial_discretisation>
-        <temporal_discretisation>
-          <theta>
-            <real_value rank="0">1</real_value>
-          </theta>
-          <relaxation>
-            <real_value rank="0">1</real_value>
-          </relaxation>
-        </temporal_discretisation>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="eisenstat"/>
-          <relative_error>
-            <real_value rank="0">1.E-7</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <initial_condition name="WholeMesh">
-          <constant>
-            <real_value shape="2" dim1="dim" rank="1">0.0 0.0</real_value>
-          </constant>
-        </initial_condition>
-        <boundary_conditions name="all_sides">
-          <surface_ids>
-            <integer_value shape="4" rank="1">7 8 9 10</integer_value>
-          </surface_ids>
-          <type name="dirichlet">
-            <apply_weakly/>
-            <align_bc_with_cartesian>
-              <x_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   u = sin(X[0])*cos(X[1])
-   return u</string_value>
-                </python>
-              </x_component>
-              <y_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   v = -1.0*cos(X[0])*sin(X[1])
-   return v</string_value>
-                </python>
-              </y_component>
-            </align_bc_with_cartesian>
-          </type>
-        </boundary_conditions>
-        <tensor_field name="Viscosity" rank="2">
-          <prescribed>
-            <value name="WholeMesh">
-              <isotropic>
-                <constant>
-                  <real_value rank="0">0.7</real_value>
-                </constant>
-              </isotropic>
-            </value>
-            <output/>
-          </prescribed>
-        </tensor_field>
-        <vector_field name="Source" rank="1">
-          <prescribed>
-            <value name="WholeMesh">
-              <python>
-                <string_value lines="20" type="python">def val(XX, t):
-   from math import sin,cos
-   nu = 0.7;
-   adv = 0.0;
-   beta = 0.0;
-   mass = 0.0;
-   rho = 1.0;
-   x = XX[0];
-   y = XX[1];
-   Su = adv*rho*(cos(x)*sin(x)*sin(y)**2 + cos(x)*sin(x)*cos(y)**2) + 2*nu*sin(x)*cos(y) - sin(x)*cos(y)
-   Sv = adv*rho*(sin(x)**2*cos(y)*sin(y) + cos(x)**2*cos(y)*sin(y)) - 2*nu*cos(x)*sin(y) - cos(x)*sin(y)
-   return (Su, Sv)</string_value>
-                <comment>u(x,y,rho,beta,nu,adv,mass,t) = sin(x)*cos(y)&#13;
-v(x,y,rho,beta,nu,adv,masst) = -cos(x)*sin(y)
-p(x,y,rho,beta,nu,adv,mass,t) = cos(x)*cos(y)&#13;
-
-u_t = diff(u,t)
-v_t = diff(v,t)
-
-u_x = diff(u,x)&#13;
-u_y = diff(u,y)
-v_x = diff(v,x)
-v_y = diff(v,y)
-
-p_x = diff(p,x)
-p_y = diff(p,y)
-&#13;
-u_xx = diff(u_x,x)
-u_yy = diff(u_y,y)
-v_xx = diff(v_x,x)
-v_yy = diff(v_y,y)
-
-mass*rho*u_t + adv*rho*(u*u_x+v*u_y + beta*(u*u_x + u*v_y)) + p_x - nu*u_xx - nu*u_yy
-mass*rho*v_t + adv*rho*(u*v_x+v*v_y + beta*(v*u_x + v*v_y)) + p_y - nu*v_xx - nu*v_yy</comment>
-              </python>
-            </value>
-            <output/>
-            <stat>
-              <include_in_stat/>
-            </stat>
-            <detectors>
-              <exclude_from_detectors/>
-            </detectors>
-          </prescribed>
-        </vector_field>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat>
-          <include_in_stat/>
-          <previous_time_step>
-            <exclude_from_stat/>
-          </previous_time_step>
-          <nonlinear_field>
-            <exclude_from_stat/>
-          </nonlinear_field>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </vector_field>
-    <scalar_field name="CFLNumber" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="PressureAnalytical" rank="0">
-      <prescribed>
-        <mesh name="PressureMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import cos
-   p = cos(X[0])*cos(X[1])
-   return p</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat/>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </scalar_field>
-    <scalar_field name="ScalarAbsoluteDifference" rank="0">
-      <diagnostic field_name_b="Pressure" field_name_a="PressureAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <relative_to_average/>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="FiniteElementDivergence" rank="0">
-      <diagnostic field_name="Velocity">
-        <algorithm legacy="true" name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <integrate_divergence_by_parts/>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="sor"/>
-          <relative_error>
-            <real_value rank="0">1.E-10</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="VelocityAnalytical" rank="1">
-      <prescribed>
-        <mesh name="VelocityMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   return (sin(X[0])*cos(X[1]), -1.0*cos(X[0])*sin(X[1]))</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </vector_field>
-    <vector_field name="VectorAbsoluteDifference" rank="1">
-      <diagnostic field_name_b="Velocity" field_name_a="VelocityAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </vector_field>
-  </material_phase>
-</fluidity_options>

=== removed file 'tests/Stokes_mms_p0p1cv/MMS_B.flml'
--- tests/Stokes_mms_p0p1cv/MMS_B.flml	2010-11-21 15:41:35 +0000
+++ tests/Stokes_mms_p0p1cv/MMS_B.flml	1970-01-01 00:00:00 +0000
@@ -1,478 +0,0 @@
-<?xml version='1.0' encoding='utf-8'?>
-<fluidity_options>
-  <simulation_name>
-    <string_value lines="1">MMS_B</string_value>
-  </simulation_name>
-  <problem_type>
-    <string_value lines="1">fluids</string_value>
-  </problem_type>
-  <geometry>
-    <dimension>
-      <integer_value rank="0">2</integer_value>
-    </dimension>
-    <mesh name="CoordinateMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="VelocityMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <mesh_shape>
-          <polynomial_degree>
-            <integer_value rank="0">0</integer_value>
-          </polynomial_degree>
-        </mesh_shape>
-        <mesh_continuity>
-          <string_value>discontinuous</string_value>
-        </mesh_continuity>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="PressureMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="InputMesh">
-      <from_file file_name="MMS_B">
-        <format name="triangle"/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-      </from_file>
-    </mesh>
-    <quadrature>
-      <degree>
-        <integer_value rank="0">4</integer_value>
-      </degree>
-    </quadrature>
-  </geometry>
-  <io>
-    <dump_format>
-      <string_value>vtk</string_value>
-    </dump_format>
-    <dump_period>
-      <constant>
-        <real_value rank="0">15.0</real_value>
-      </constant>
-    </dump_period>
-    <output_mesh name="VelocityMesh"/>
-    <checkpointing>
-      <checkpoint_period_in_dumps>
-        <integer_value rank="0">10000</integer_value>
-      </checkpoint_period_in_dumps>
-      <checkpoint_at_end/>
-    </checkpointing>
-    <stat/>
-  </io>
-  <timestepping>
-    <current_time>
-      <real_value rank="0">0.0</real_value>
-    </current_time>
-    <timestep>
-      <real_value rank="0">0.0040276830059454609</real_value>
-      <comment>gives a max cfl number of 0.1</comment>
-    </timestep>
-    <finish_time>
-      <real_value rank="0">10.0</real_value>
-      <comment>10.0</comment>
-    </finish_time>
-    <steady_state>
-      <tolerance>
-        <real_value rank="0">1.E-8</real_value>
-        <infinity_norm/>
-      </tolerance>
-    </steady_state>
-  </timestepping>
-  <physical_parameters/>
-  <material_phase name="NS">
-    <equation_of_state>
-      <fluids>
-        <linear>
-          <reference_density>
-            <real_value rank="0">1.0</real_value>
-          </reference_density>
-        </linear>
-      </fluids>
-    </equation_of_state>
-    <scalar_field name="Pressure" rank="0">
-      <prognostic>
-        <mesh name="PressureMesh"/>
-        <spatial_discretisation>
-          <control_volumes/>
-        </spatial_discretisation>
-        <reference_node>
-          <integer_value rank="0">1</integer_value>
-        </reference_node>
-        <scheme>
-          <poisson_pressure_solution>
-            <string_value lines="1">never</string_value>
-          </poisson_pressure_solution>
-          <use_projection_method>
-            <full_schur_complement>
-              <inner_matrix name="FullMomentumMatrix">
-                <solver>
-                  <iterative_method name="cg"/>
-                  <preconditioner name="sor"/>
-                  <relative_error>
-                    <real_value rank="0">1E-10</real_value>
-                  </relative_error>
-                  <max_iterations>
-                    <integer_value rank="0">10000</integer_value>
-                  </max_iterations>
-                  <start_from_zero/>
-                  <never_ignore_solver_failures/>
-                  <diagnostics>
-                    <monitors/>
-                  </diagnostics>
-                </solver>
-              </inner_matrix>
-              <preconditioner_matrix name="DiagonalSchurComplement"/>
-            </full_schur_complement>
-          </use_projection_method>
-        </scheme>
-        <solver>
-          <iterative_method name="fgmres"/>
-          <preconditioner name="mg"/>
-          <relative_error>
-            <real_value rank="0">1.0e-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </scalar_field>
-    <scalar_field name="Density" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="Velocity" rank="1">
-      <prognostic>
-        <mesh name="VelocityMesh"/>
-        <equation name="LinearMomentum"/>
-        <spatial_discretisation>
-          <discontinuous_galerkin>
-            <mass_terms>
-              <exclude_mass_terms/>
-            </mass_terms>
-            <viscosity_scheme>
-              <bassi_rebay/>
-            </viscosity_scheme>
-            <advection_scheme>
-              <none/>
-              <integrate_advection_by_parts>
-                <twice/>
-              </integrate_advection_by_parts>
-            </advection_scheme>
-          </discontinuous_galerkin>
-          <conservative_advection>
-            <real_value rank="0">0.0</real_value>
-          </conservative_advection>
-        </spatial_discretisation>
-        <temporal_discretisation>
-          <theta>
-            <real_value rank="0">1</real_value>
-          </theta>
-          <relaxation>
-            <real_value rank="0">1</real_value>
-          </relaxation>
-        </temporal_discretisation>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="eisenstat"/>
-          <relative_error>
-            <real_value rank="0">1.E-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <initial_condition name="WholeMesh">
-          <constant>
-            <real_value shape="2" dim1="dim" rank="1">0.0 0.0</real_value>
-          </constant>
-        </initial_condition>
-        <boundary_conditions name="all_sides">
-          <surface_ids>
-            <integer_value shape="4" rank="1">7 8 9 10</integer_value>
-          </surface_ids>
-          <type name="dirichlet">
-            <apply_weakly/>
-            <align_bc_with_cartesian>
-              <x_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   u = sin(X[0])*cos(X[1])
-   return u</string_value>
-                </python>
-              </x_component>
-              <y_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   v = -1.0*cos(X[0])*sin(X[1])
-   return v</string_value>
-                </python>
-              </y_component>
-            </align_bc_with_cartesian>
-          </type>
-        </boundary_conditions>
-        <tensor_field name="Viscosity" rank="2">
-          <prescribed>
-            <value name="WholeMesh">
-              <isotropic>
-                <constant>
-                  <real_value rank="0">0.7</real_value>
-                </constant>
-              </isotropic>
-            </value>
-            <output/>
-          </prescribed>
-        </tensor_field>
-        <vector_field name="Source" rank="1">
-          <prescribed>
-            <value name="WholeMesh">
-              <python>
-                <string_value lines="20" type="python">def val(XX, t):
-   from math import sin,cos
-   nu = 0.7;
-   adv = 0.0;
-   beta = 0.0;
-   mass = 0.0;
-   rho = 1.0;
-   x = XX[0];
-   y = XX[1];
-   Su = adv*rho*(cos(x)*sin(x)*sin(y)**2 + cos(x)*sin(x)*cos(y)**2) + 2*nu*sin(x)*cos(y) - sin(x)*cos(y)
-   Sv = adv*rho*(sin(x)**2*cos(y)*sin(y) + cos(x)**2*cos(y)*sin(y)) - 2*nu*cos(x)*sin(y) - cos(x)*sin(y)
-   return (Su, Sv)</string_value>
-                <comment>u(x,y,rho,beta,nu,adv,mass,t) = sin(x)*cos(y)&#13;
-v(x,y,rho,beta,nu,adv,masst) = -cos(x)*sin(y)
-p(x,y,rho,beta,nu,adv,mass,t) = cos(x)*cos(y)&#13;
-
-u_t = diff(u,t)
-v_t = diff(v,t)
-
-u_x = diff(u,x)&#13;
-u_y = diff(u,y)
-v_x = diff(v,x)
-v_y = diff(v,y)
-
-p_x = diff(p,x)
-p_y = diff(p,y)
-&#13;
-u_xx = diff(u_x,x)
-u_yy = diff(u_y,y)
-v_xx = diff(v_x,x)
-v_yy = diff(v_y,y)
-
-mass*rho*u_t + adv*rho*(u*u_x+v*u_y + beta*(u*u_x + u*v_y)) + p_x - nu*u_xx - nu*u_yy
-mass*rho*v_t + adv*rho*(u*v_x+v*v_y + beta*(v*u_x + v*v_y)) + p_y - nu*v_xx - nu*v_yy</comment>
-              </python>
-            </value>
-            <output/>
-            <stat>
-              <include_in_stat/>
-            </stat>
-            <detectors>
-              <exclude_from_detectors/>
-            </detectors>
-          </prescribed>
-        </vector_field>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat>
-          <include_in_stat/>
-          <previous_time_step>
-            <exclude_from_stat/>
-          </previous_time_step>
-          <nonlinear_field>
-            <exclude_from_stat/>
-          </nonlinear_field>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </vector_field>
-    <scalar_field name="CFLNumber" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="PressureAnalytical" rank="0">
-      <prescribed>
-        <mesh name="PressureMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import cos
-   p = cos(X[0])*cos(X[1])
-   return p</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat/>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </scalar_field>
-    <scalar_field name="ScalarAbsoluteDifference" rank="0">
-      <diagnostic field_name_b="Pressure" field_name_a="PressureAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <relative_to_average/>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="FiniteElementDivergence" rank="0">
-      <diagnostic field_name="Velocity">
-        <algorithm legacy="true" name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <integrate_divergence_by_parts/>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="sor"/>
-          <relative_error>
-            <real_value rank="0">1.E-10</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="VelocityAnalytical" rank="1">
-      <prescribed>
-        <mesh name="VelocityMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   return (sin(X[0])*cos(X[1]), -1.0*cos(X[0])*sin(X[1]))</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </vector_field>
-    <vector_field name="VectorAbsoluteDifference" rank="1">
-      <diagnostic field_name_b="Velocity" field_name_a="VelocityAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </vector_field>
-  </material_phase>
-</fluidity_options>

=== removed file 'tests/Stokes_mms_p0p1cv/MMS_C.flml'
--- tests/Stokes_mms_p0p1cv/MMS_C.flml	2010-11-21 15:41:35 +0000
+++ tests/Stokes_mms_p0p1cv/MMS_C.flml	1970-01-01 00:00:00 +0000
@@ -1,478 +0,0 @@
-<?xml version='1.0' encoding='utf-8'?>
-<fluidity_options>
-  <simulation_name>
-    <string_value lines="1">MMS_C</string_value>
-  </simulation_name>
-  <problem_type>
-    <string_value lines="1">fluids</string_value>
-  </problem_type>
-  <geometry>
-    <dimension>
-      <integer_value rank="0">2</integer_value>
-    </dimension>
-    <mesh name="CoordinateMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="VelocityMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <mesh_shape>
-          <polynomial_degree>
-            <integer_value rank="0">0</integer_value>
-          </polynomial_degree>
-        </mesh_shape>
-        <mesh_continuity>
-          <string_value>discontinuous</string_value>
-        </mesh_continuity>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="PressureMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="InputMesh">
-      <from_file file_name="MMS_C">
-        <format name="triangle"/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-      </from_file>
-    </mesh>
-    <quadrature>
-      <degree>
-        <integer_value rank="0">4</integer_value>
-      </degree>
-    </quadrature>
-  </geometry>
-  <io>
-    <dump_format>
-      <string_value>vtk</string_value>
-    </dump_format>
-    <dump_period>
-      <constant>
-        <real_value rank="0">15.0</real_value>
-      </constant>
-    </dump_period>
-    <output_mesh name="VelocityMesh"/>
-    <checkpointing>
-      <checkpoint_period_in_dumps>
-        <integer_value rank="0">10000</integer_value>
-      </checkpoint_period_in_dumps>
-      <checkpoint_at_end/>
-    </checkpointing>
-    <stat/>
-  </io>
-  <timestepping>
-    <current_time>
-      <real_value rank="0">0.0</real_value>
-    </current_time>
-    <timestep>
-      <real_value rank="0">0.0020011146041869813</real_value>
-      <comment>gives a max cfl number of 0.1</comment>
-    </timestep>
-    <finish_time>
-      <real_value rank="0">10.0</real_value>
-      <comment>10.0</comment>
-    </finish_time>
-    <steady_state>
-      <tolerance>
-        <real_value rank="0">1.E-8</real_value>
-        <infinity_norm/>
-      </tolerance>
-    </steady_state>
-  </timestepping>
-  <physical_parameters/>
-  <material_phase name="NS">
-    <equation_of_state>
-      <fluids>
-        <linear>
-          <reference_density>
-            <real_value rank="0">1.0</real_value>
-          </reference_density>
-        </linear>
-      </fluids>
-    </equation_of_state>
-    <scalar_field name="Pressure" rank="0">
-      <prognostic>
-        <mesh name="PressureMesh"/>
-        <spatial_discretisation>
-          <control_volumes/>
-        </spatial_discretisation>
-        <reference_node>
-          <integer_value rank="0">1</integer_value>
-        </reference_node>
-        <scheme>
-          <poisson_pressure_solution>
-            <string_value lines="1">never</string_value>
-          </poisson_pressure_solution>
-          <use_projection_method>
-            <full_schur_complement>
-              <inner_matrix name="FullMomentumMatrix">
-                <solver>
-                  <iterative_method name="cg"/>
-                  <preconditioner name="sor"/>
-                  <relative_error>
-                    <real_value rank="0">1E-10</real_value>
-                  </relative_error>
-                  <max_iterations>
-                    <integer_value rank="0">10000</integer_value>
-                  </max_iterations>
-                  <start_from_zero/>
-                  <never_ignore_solver_failures/>
-                  <diagnostics>
-                    <monitors/>
-                  </diagnostics>
-                </solver>
-              </inner_matrix>
-              <preconditioner_matrix name="DiagonalSchurComplement"/>
-            </full_schur_complement>
-          </use_projection_method>
-        </scheme>
-        <solver>
-          <iterative_method name="fgmres"/>
-          <preconditioner name="mg"/>
-          <relative_error>
-            <real_value rank="0">1.0e-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </scalar_field>
-    <scalar_field name="Density" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="Velocity" rank="1">
-      <prognostic>
-        <mesh name="VelocityMesh"/>
-        <equation name="LinearMomentum"/>
-        <spatial_discretisation>
-          <discontinuous_galerkin>
-            <mass_terms>
-              <exclude_mass_terms/>
-            </mass_terms>
-            <viscosity_scheme>
-              <bassi_rebay/>
-            </viscosity_scheme>
-            <advection_scheme>
-              <none/>
-              <integrate_advection_by_parts>
-                <twice/>
-              </integrate_advection_by_parts>
-            </advection_scheme>
-          </discontinuous_galerkin>
-          <conservative_advection>
-            <real_value rank="0">0.0</real_value>
-          </conservative_advection>
-        </spatial_discretisation>
-        <temporal_discretisation>
-          <theta>
-            <real_value rank="0">1</real_value>
-          </theta>
-          <relaxation>
-            <real_value rank="0">1</real_value>
-          </relaxation>
-        </temporal_discretisation>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="eisenstat"/>
-          <relative_error>
-            <real_value rank="0">1.E-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <initial_condition name="WholeMesh">
-          <constant>
-            <real_value shape="2" dim1="dim" rank="1">0.0 0.0</real_value>
-          </constant>
-        </initial_condition>
-        <boundary_conditions name="all_sides">
-          <surface_ids>
-            <integer_value shape="4" rank="1">7 8 9 10</integer_value>
-          </surface_ids>
-          <type name="dirichlet">
-            <apply_weakly/>
-            <align_bc_with_cartesian>
-              <x_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   u = sin(X[0])*cos(X[1])
-   return u</string_value>
-                </python>
-              </x_component>
-              <y_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   v = -1.0*cos(X[0])*sin(X[1])
-   return v</string_value>
-                </python>
-              </y_component>
-            </align_bc_with_cartesian>
-          </type>
-        </boundary_conditions>
-        <tensor_field name="Viscosity" rank="2">
-          <prescribed>
-            <value name="WholeMesh">
-              <isotropic>
-                <constant>
-                  <real_value rank="0">0.7</real_value>
-                </constant>
-              </isotropic>
-            </value>
-            <output/>
-          </prescribed>
-        </tensor_field>
-        <vector_field name="Source" rank="1">
-          <prescribed>
-            <value name="WholeMesh">
-              <python>
-                <string_value lines="20" type="python">def val(XX, t):
-   from math import sin,cos
-   nu = 0.7;
-   adv = 0.0;
-   beta = 0.0;
-   mass = 0.0;
-   rho = 1.0;
-   x = XX[0];
-   y = XX[1];
-   Su = adv*rho*(cos(x)*sin(x)*sin(y)**2 + cos(x)*sin(x)*cos(y)**2) + 2*nu*sin(x)*cos(y) - sin(x)*cos(y)
-   Sv = adv*rho*(sin(x)**2*cos(y)*sin(y) + cos(x)**2*cos(y)*sin(y)) - 2*nu*cos(x)*sin(y) - cos(x)*sin(y)
-   return (Su, Sv)</string_value>
-                <comment>u(x,y,rho,beta,nu,adv,mass,t) = sin(x)*cos(y)&#13;
-v(x,y,rho,beta,nu,adv,masst) = -cos(x)*sin(y)
-p(x,y,rho,beta,nu,adv,mass,t) = cos(x)*cos(y)&#13;
-
-u_t = diff(u,t)
-v_t = diff(v,t)
-
-u_x = diff(u,x)&#13;
-u_y = diff(u,y)
-v_x = diff(v,x)
-v_y = diff(v,y)
-
-p_x = diff(p,x)
-p_y = diff(p,y)
-&#13;
-u_xx = diff(u_x,x)
-u_yy = diff(u_y,y)
-v_xx = diff(v_x,x)
-v_yy = diff(v_y,y)
-
-mass*rho*u_t + adv*rho*(u*u_x+v*u_y + beta*(u*u_x + u*v_y)) + p_x - nu*u_xx - nu*u_yy
-mass*rho*v_t + adv*rho*(u*v_x+v*v_y + beta*(v*u_x + v*v_y)) + p_y - nu*v_xx - nu*v_yy</comment>
-              </python>
-            </value>
-            <output/>
-            <stat>
-              <include_in_stat/>
-            </stat>
-            <detectors>
-              <exclude_from_detectors/>
-            </detectors>
-          </prescribed>
-        </vector_field>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat>
-          <include_in_stat/>
-          <previous_time_step>
-            <exclude_from_stat/>
-          </previous_time_step>
-          <nonlinear_field>
-            <exclude_from_stat/>
-          </nonlinear_field>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </vector_field>
-    <scalar_field name="CFLNumber" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="PressureAnalytical" rank="0">
-      <prescribed>
-        <mesh name="PressureMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import cos
-   p = cos(X[0])*cos(X[1])
-   return p</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat/>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </scalar_field>
-    <scalar_field name="ScalarAbsoluteDifference" rank="0">
-      <diagnostic field_name_b="Pressure" field_name_a="PressureAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <relative_to_average/>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="FiniteElementDivergence" rank="0">
-      <diagnostic field_name="Velocity">
-        <algorithm legacy="true" name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <integrate_divergence_by_parts/>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="sor"/>
-          <relative_error>
-            <real_value rank="0">1.E-10</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="VelocityAnalytical" rank="1">
-      <prescribed>
-        <mesh name="VelocityMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   return (sin(X[0])*cos(X[1]), -1.0*cos(X[0])*sin(X[1]))</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </vector_field>
-    <vector_field name="VectorAbsoluteDifference" rank="1">
-      <diagnostic field_name_b="Velocity" field_name_a="VelocityAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </vector_field>
-  </material_phase>
-</fluidity_options>

=== removed file 'tests/Stokes_mms_p0p1cv/MMS_D.flml'
--- tests/Stokes_mms_p0p1cv/MMS_D.flml	2010-11-21 15:41:35 +0000
+++ tests/Stokes_mms_p0p1cv/MMS_D.flml	1970-01-01 00:00:00 +0000
@@ -1,478 +0,0 @@
-<?xml version='1.0' encoding='utf-8'?>
-<fluidity_options>
-  <simulation_name>
-    <string_value lines="1">MMS_D</string_value>
-  </simulation_name>
-  <problem_type>
-    <string_value lines="1">fluids</string_value>
-  </problem_type>
-  <geometry>
-    <dimension>
-      <integer_value rank="0">2</integer_value>
-    </dimension>
-    <mesh name="CoordinateMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="VelocityMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <mesh_shape>
-          <polynomial_degree>
-            <integer_value rank="0">0</integer_value>
-          </polynomial_degree>
-        </mesh_shape>
-        <mesh_continuity>
-          <string_value>discontinuous</string_value>
-        </mesh_continuity>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="PressureMesh">
-      <from_mesh>
-        <mesh name="InputMesh"/>
-        <stat>
-          <exclude_from_stat/>
-        </stat>
-      </from_mesh>
-    </mesh>
-    <mesh name="InputMesh">
-      <from_file file_name="MMS_D">
-        <format name="triangle"/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-      </from_file>
-    </mesh>
-    <quadrature>
-      <degree>
-        <integer_value rank="0">4</integer_value>
-      </degree>
-    </quadrature>
-  </geometry>
-  <io>
-    <dump_format>
-      <string_value>vtk</string_value>
-    </dump_format>
-    <dump_period>
-      <constant>
-        <real_value rank="0">15.0</real_value>
-      </constant>
-    </dump_period>
-    <output_mesh name="VelocityMesh"/>
-    <checkpointing>
-      <checkpoint_period_in_dumps>
-        <integer_value rank="0">10000</integer_value>
-      </checkpoint_period_in_dumps>
-      <checkpoint_at_end/>
-    </checkpointing>
-    <stat/>
-  </io>
-  <timestepping>
-    <current_time>
-      <real_value rank="0">0.0</real_value>
-    </current_time>
-    <timestep>
-      <real_value rank="0">0.00073714354843638517</real_value>
-      <comment>gives a max cfl number of 0.1</comment>
-    </timestep>
-    <finish_time>
-      <real_value rank="0">10.0</real_value>
-      <comment>10.0</comment>
-    </finish_time>
-    <steady_state>
-      <tolerance>
-        <real_value rank="0">1.E-8</real_value>
-        <infinity_norm/>
-      </tolerance>
-    </steady_state>
-  </timestepping>
-  <physical_parameters/>
-  <material_phase name="NS">
-    <equation_of_state>
-      <fluids>
-        <linear>
-          <reference_density>
-            <real_value rank="0">1.0</real_value>
-          </reference_density>
-        </linear>
-      </fluids>
-    </equation_of_state>
-    <scalar_field name="Pressure" rank="0">
-      <prognostic>
-        <mesh name="PressureMesh"/>
-        <spatial_discretisation>
-          <control_volumes/>
-        </spatial_discretisation>
-        <reference_node>
-          <integer_value rank="0">1</integer_value>
-        </reference_node>
-        <scheme>
-          <poisson_pressure_solution>
-            <string_value lines="1">never</string_value>
-          </poisson_pressure_solution>
-          <use_projection_method>
-            <full_schur_complement>
-              <inner_matrix name="FullMomentumMatrix">
-                <solver>
-                  <iterative_method name="cg"/>
-                  <preconditioner name="sor"/>
-                  <relative_error>
-                    <real_value rank="0">1E-10</real_value>
-                  </relative_error>
-                  <max_iterations>
-                    <integer_value rank="0">10000</integer_value>
-                  </max_iterations>
-                  <start_from_zero/>
-                  <never_ignore_solver_failures/>
-                  <diagnostics>
-                    <monitors/>
-                  </diagnostics>
-                </solver>
-              </inner_matrix>
-              <preconditioner_matrix name="DiagonalSchurComplement"/>
-            </full_schur_complement>
-          </use_projection_method>
-        </scheme>
-        <solver>
-          <iterative_method name="fgmres"/>
-          <preconditioner name="mg"/>
-          <relative_error>
-            <real_value rank="0">1.0e-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </scalar_field>
-    <scalar_field name="Density" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="Velocity" rank="1">
-      <prognostic>
-        <mesh name="VelocityMesh"/>
-        <equation name="LinearMomentum"/>
-        <spatial_discretisation>
-          <discontinuous_galerkin>
-            <mass_terms>
-              <exclude_mass_terms/>
-            </mass_terms>
-            <viscosity_scheme>
-              <bassi_rebay/>
-            </viscosity_scheme>
-            <advection_scheme>
-              <none/>
-              <integrate_advection_by_parts>
-                <twice/>
-              </integrate_advection_by_parts>
-            </advection_scheme>
-          </discontinuous_galerkin>
-          <conservative_advection>
-            <real_value rank="0">0.0</real_value>
-          </conservative_advection>
-        </spatial_discretisation>
-        <temporal_discretisation>
-          <theta>
-            <real_value rank="0">1</real_value>
-          </theta>
-          <relaxation>
-            <real_value rank="0">1</real_value>
-          </relaxation>
-        </temporal_discretisation>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="eisenstat"/>
-          <relative_error>
-            <real_value rank="0">1.E-07</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <initial_condition name="WholeMesh">
-          <constant>
-            <real_value shape="2" dim1="dim" rank="1">0.0 0.0</real_value>
-          </constant>
-        </initial_condition>
-        <boundary_conditions name="all_sides">
-          <surface_ids>
-            <integer_value shape="4" rank="1">7 8 9 10</integer_value>
-          </surface_ids>
-          <type name="dirichlet">
-            <apply_weakly/>
-            <align_bc_with_cartesian>
-              <x_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   u = sin(X[0])*cos(X[1])
-   return u</string_value>
-                </python>
-              </x_component>
-              <y_component>
-                <python>
-                  <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   v = -1.0*cos(X[0])*sin(X[1])
-   return v</string_value>
-                </python>
-              </y_component>
-            </align_bc_with_cartesian>
-          </type>
-        </boundary_conditions>
-        <tensor_field name="Viscosity" rank="2">
-          <prescribed>
-            <value name="WholeMesh">
-              <isotropic>
-                <constant>
-                  <real_value rank="0">0.7</real_value>
-                </constant>
-              </isotropic>
-            </value>
-            <output/>
-          </prescribed>
-        </tensor_field>
-        <vector_field name="Source" rank="1">
-          <prescribed>
-            <value name="WholeMesh">
-              <python>
-                <string_value lines="20" type="python">def val(XX, t):
-   from math import sin,cos
-   nu = 0.7;
-   adv = 0.0;
-   beta = 0.0;
-   mass = 0.0;
-   rho = 1.0;
-   x = XX[0];
-   y = XX[1];
-   Su = adv*rho*(cos(x)*sin(x)*sin(y)**2 + cos(x)*sin(x)*cos(y)**2) + 2*nu*sin(x)*cos(y) - sin(x)*cos(y)
-   Sv = adv*rho*(sin(x)**2*cos(y)*sin(y) + cos(x)**2*cos(y)*sin(y)) - 2*nu*cos(x)*sin(y) - cos(x)*sin(y)
-   return (Su, Sv)</string_value>
-                <comment>u(x,y,rho,beta,nu,adv,mass,t) = sin(x)*cos(y)&#13;
-v(x,y,rho,beta,nu,adv,masst) = -cos(x)*sin(y)
-p(x,y,rho,beta,nu,adv,mass,t) = cos(x)*cos(y)&#13;
-
-u_t = diff(u,t)
-v_t = diff(v,t)
-
-u_x = diff(u,x)&#13;
-u_y = diff(u,y)
-v_x = diff(v,x)
-v_y = diff(v,y)
-
-p_x = diff(p,x)
-p_y = diff(p,y)
-&#13;
-u_xx = diff(u_x,x)
-u_yy = diff(u_y,y)
-v_xx = diff(v_x,x)
-v_yy = diff(v_y,y)
-
-mass*rho*u_t + adv*rho*(u*u_x+v*u_y + beta*(u*u_x + u*v_y)) + p_x - nu*u_xx - nu*u_yy
-mass*rho*v_t + adv*rho*(u*v_x+v*v_y + beta*(v*u_x + v*v_y)) + p_y - nu*v_xx - nu*v_yy</comment>
-              </python>
-            </value>
-            <output/>
-            <stat>
-              <include_in_stat/>
-            </stat>
-            <detectors>
-              <exclude_from_detectors/>
-            </detectors>
-          </prescribed>
-        </vector_field>
-        <output>
-          <include_previous_time_step/>
-        </output>
-        <stat>
-          <include_in_stat/>
-          <previous_time_step>
-            <exclude_from_stat/>
-          </previous_time_step>
-          <nonlinear_field>
-            <exclude_from_stat/>
-          </nonlinear_field>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <consistent_interpolation/>
-      </prognostic>
-    </vector_field>
-    <scalar_field name="CFLNumber" rank="0">
-      <diagnostic>
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="PressureAnalytical" rank="0">
-      <prescribed>
-        <mesh name="PressureMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import cos
-   p = cos(X[0])*cos(X[1])
-   return p</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat/>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </scalar_field>
-    <scalar_field name="ScalarAbsoluteDifference" rank="0">
-      <diagnostic field_name_b="Pressure" field_name_a="PressureAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-        <relative_to_average/>
-      </diagnostic>
-    </scalar_field>
-    <scalar_field name="FiniteElementDivergence" rank="0">
-      <diagnostic field_name="Velocity">
-        <algorithm legacy="true" name="Internal" material_phase_support="multiple"/>
-        <mesh name="PressureMesh"/>
-        <integrate_divergence_by_parts/>
-        <solver>
-          <iterative_method name="cg"/>
-          <preconditioner name="sor"/>
-          <relative_error>
-            <real_value rank="0">1.E-10</real_value>
-          </relative_error>
-          <max_iterations>
-            <integer_value rank="0">10000</integer_value>
-          </max_iterations>
-          <never_ignore_solver_failures/>
-          <diagnostics>
-            <monitors/>
-          </diagnostics>
-        </solver>
-        <output/>
-        <stat/>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </scalar_field>
-    <vector_field name="VelocityAnalytical" rank="1">
-      <prescribed>
-        <mesh name="VelocityMesh"/>
-        <value name="WholeMesh">
-          <python>
-            <string_value lines="20" type="python">def val(X,t):
-   from math import sin, cos
-   # Shear rotation about origin.
-   return (sin(X[0])*cos(X[1]), -1.0*cos(X[0])*sin(X[1]))</string_value>
-          </python>
-        </value>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <detectors>
-          <exclude_from_detectors/>
-        </detectors>
-      </prescribed>
-    </vector_field>
-    <vector_field name="VectorAbsoluteDifference" rank="1">
-      <diagnostic field_name_b="Velocity" field_name_a="VelocityAnalytical">
-        <algorithm name="Internal" material_phase_support="multiple"/>
-        <mesh name="VelocityMesh"/>
-        <output/>
-        <stat>
-          <include_in_stat/>
-        </stat>
-        <convergence>
-          <include_in_convergence/>
-        </convergence>
-        <detectors>
-          <include_in_detectors/>
-        </detectors>
-        <steady_state>
-          <include_in_steady_state/>
-        </steady_state>
-      </diagnostic>
-    </vector_field>
-  </material_phase>
-</fluidity_options>

=== removed file 'tests/Stokes_mms_p0p1cv/Makefile'
--- tests/Stokes_mms_p0p1cv/Makefile	2011-10-21 10:05:25 +0000
+++ tests/Stokes_mms_p0p1cv/Makefile	1970-01-01 00:00:00 +0000
@@ -1,8 +0,0 @@
-input:	clean
-	../../bin/gmsh2triangle --2d src/MMS_A.msh
-	../../bin/gmsh2triangle --2d src/MMS_B.msh
-	../../bin/gmsh2triangle --2d src/MMS_C.msh
-	../../bin/gmsh2triangle --2d src/MMS_D.msh
-
-clean:
-	rm -f *.vtu *.stat *.s *.log *.node *.ele *.edge *checkpoint*

=== removed file 'tests/Stokes_mms_p0p1cv/Stokes_mms_p0p1cv.xml'
--- tests/Stokes_mms_p0p1cv/Stokes_mms_p0p1cv.xml	2011-10-21 10:05:25 +0000
+++ tests/Stokes_mms_p0p1cv/Stokes_mms_p0p1cv.xml	1970-01-01 00:00:00 +0000
@@ -1,301 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-<testproblem>
-  <name>p0p1cv stokes spatial convergence test</name>
-  <owner userid="rhodrid"/>
-  <tags>flml</tags>
-  <problem_definition length="special" nprocs="1">
-    <command_line>fluidity -v2 -l MMS_A.flml &amp;&amp; fluidity MMS_B.flml &amp;&amp; fluidity MMS_C.flml &amp;&amp; fluidity MMS_D.flml </command_line>
-  </problem_definition>
-  <variables>
-    <variable name="ab_convergence_vel" language="python">
-from fluidity_tools import stat_parser as stat
-from math import log
-
-a_error_x = stat("MMS_A.stat")["NS"]["VectorAbsoluteDifference%1"]["l2norm"][-1]
-b_error_x = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%1"]["l2norm"][-1]
-a_error_y = stat("MMS_A.stat")["NS"]["VectorAbsoluteDifference%2"]["l2norm"][-1]
-b_error_y = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%2"]["l2norm"][-1]
-
-a_error_inf_x = stat("MMS_A.stat")["NS"]["VectorAbsoluteDifference%1"]["max"][-1]
-b_error_inf_x = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%1"]["max"][-1]
-a_error_inf_y = stat("MMS_A.stat")["NS"]["VectorAbsoluteDifference%2"]["max"][-1]
-b_error_inf_y = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%2"]["max"][-1]
-
-print a_error_x
-print b_error_x
-print a_error_y
-print b_error_y
-
-print a_error_inf_x
-print b_error_inf_x
-print a_error_inf_y
-print b_error_inf_y
-
-ab_ratio_x = a_error_x / b_error_x
-ab_ratio_y = a_error_y / b_error_y
-ab_ratio_inf_x = a_error_inf_x / b_error_inf_x
-ab_ratio_inf_y = a_error_inf_y / b_error_inf_y
-ab_convergence_vel = [[log(ab_ratio_x, 2), log(ab_ratio_inf_x, 2)], [log(ab_ratio_y, 2), log(ab_ratio_inf_y, 2)]]
-    </variable>
-    <variable name="ab_convergence_p" language="python">
-from fluidity_tools import stat_parser as stat
-from math import log
-
-a_error = stat("MMS_A.stat")["NS"]["ScalarAbsoluteDifference"]["l2norm"][-1]
-b_error = stat("MMS_B.stat")["NS"]["ScalarAbsoluteDifference"]["l2norm"][-1]
-
-a_error_inf = stat("MMS_A.stat")["NS"]["ScalarAbsoluteDifference"]["max"][-1]
-b_error_inf = stat("MMS_B.stat")["NS"]["ScalarAbsoluteDifference"]["max"][-1]
-
-print a_error
-print b_error
-
-print a_error_inf
-print b_error_inf
-
-ab_ratio = a_error / b_error
-ab_ratio_inf = a_error_inf / b_error_inf
-ab_convergence_p = [log(ab_ratio, 2), log(ab_ratio_inf, 2)]
-    </variable>
-    <variable name="bc_convergence_vel" language="python">
-from fluidity_tools import stat_parser as stat
-from math import log
-
-b_error_x = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%1"]["l2norm"][-1]
-c_error_x = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%1"]["l2norm"][-1]
-b_error_y = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%2"]["l2norm"][-1]
-c_error_y = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%2"]["l2norm"][-1]
-
-b_error_inf_x = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%1"]["max"][-1]
-c_error_inf_x = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%1"]["max"][-1]
-b_error_inf_y = stat("MMS_B.stat")["NS"]["VectorAbsoluteDifference%2"]["max"][-1]
-c_error_inf_y = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%2"]["max"][-1]
-
-print b_error_x
-print c_error_x
-print b_error_y
-print c_error_y
-
-print b_error_inf_x
-print c_error_inf_x
-print b_error_inf_y
-print c_error_inf_y
-
-bc_ratio_x = b_error_x / c_error_x
-bc_ratio_y = b_error_y / c_error_y
-bc_ratio_inf_x = b_error_inf_x / c_error_inf_x
-bc_ratio_inf_y = b_error_inf_y / c_error_inf_y
-bc_convergence_vel = [[log(bc_ratio_x, 2), log(bc_ratio_inf_x, 2)], [log(bc_ratio_y, 2), log(bc_ratio_inf_y, 2)]]
-    </variable>
-    <variable name="bc_convergence_p" language="python">
-from fluidity_tools import stat_parser as stat
-from math import log
-
-b_error = stat("MMS_B.stat")["NS"]["ScalarAbsoluteDifference"]["l2norm"][-1]
-c_error = stat("MMS_C.stat")["NS"]["ScalarAbsoluteDifference"]["l2norm"][-1]
-
-b_error_inf = stat("MMS_B.stat")["NS"]["ScalarAbsoluteDifference"]["max"][-1]
-c_error_inf = stat("MMS_C.stat")["NS"]["ScalarAbsoluteDifference"]["max"][-1]
-
-print b_error
-print c_error
-
-print b_error_inf
-print c_error_inf
-
-bc_ratio = b_error / c_error
-bc_ratio_inf = b_error_inf / c_error_inf
-bc_convergence_p = [log(bc_ratio, 2), log(bc_ratio_inf, 2)]
-    </variable>
-    <variable name="cd_convergence_vel" language="python">
-from fluidity_tools import stat_parser as stat
-from math import log
-
-c_error_x = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%1"]["l2norm"][-1]
-d_error_x = stat("MMS_D.stat")["NS"]["VectorAbsoluteDifference%1"]["l2norm"][-1]
-c_error_y = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%2"]["l2norm"][-1]
-d_error_y = stat("MMS_D.stat")["NS"]["VectorAbsoluteDifference%2"]["l2norm"][-1]
-
-c_error_inf_x = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%1"]["max"][-1]
-d_error_inf_x = stat("MMS_D.stat")["NS"]["VectorAbsoluteDifference%1"]["max"][-1]
-c_error_inf_y = stat("MMS_C.stat")["NS"]["VectorAbsoluteDifference%2"]["max"][-1]
-d_error_inf_y = stat("MMS_D.stat")["NS"]["VectorAbsoluteDifference%2"]["max"][-1]
-
-print c_error_x
-print d_error_x
-print c_error_y
-print d_error_y
-
-print c_error_inf_x
-print d_error_inf_x
-print c_error_inf_y
-print d_error_inf_y
-
-cd_ratio_x = c_error_x / d_error_x
-cd_ratio_y = c_error_y / d_error_y
-cd_ratio_inf_x = c_error_inf_x / d_error_inf_x
-cd_ratio_inf_y = c_error_inf_y / d_error_inf_y
-cd_convergence_vel = [[log(cd_ratio_x, 2), log(cd_ratio_inf_x, 2)], [log(cd_ratio_y, 2), log(cd_ratio_inf_y, 2)]]
-    </variable>
-    <variable name="cd_convergence_p" language="python">
-from fluidity_tools import stat_parser as stat
-from math import log
-
-c_error = stat("MMS_C.stat")["NS"]["ScalarAbsoluteDifference"]["l2norm"][-1]
-d_error = stat("MMS_D.stat")["NS"]["ScalarAbsoluteDifference"]["l2norm"][-1]
-
-c_error_inf = stat("MMS_C.stat")["NS"]["ScalarAbsoluteDifference"]["max"][-1]
-d_error_inf = stat("MMS_D.stat")["NS"]["ScalarAbsoluteDifference"]["max"][-1]
-
-print c_error
-print d_error
-
-print c_error_inf
-print d_error_inf
-
-cd_ratio = c_error / d_error
-cd_ratio_inf = c_error_inf / d_error_inf
-cd_convergence_p = [log(cd_ratio, 2), log(cd_ratio_inf, 2)]
-    </variable>
-   <variable name="a_finish_time" language="python">
-from fluidity_tools import stat_parser as stat
-a_finish_time = stat("MMS_A.stat")["ElapsedTime"]["value"][-1]
-    </variable>
-    <variable name="b_finish_time" language="python">
-from fluidity_tools import stat_parser as stat
-b_finish_time = stat("MMS_B.stat")["ElapsedTime"]["value"][-1]
-    </variable>
-    <variable name="c_finish_time" language="python">
-from fluidity_tools import stat_parser as stat
-c_finish_time = stat("MMS_C.stat")["ElapsedTime"]["value"][-1]
-    </variable>
-    <variable name="d_finish_time" language="python">
-from fluidity_tools import stat_parser as stat
-d_finish_time = stat("MMS_D.stat")["ElapsedTime"]["value"][-1]
-    </variable>
-    <variable name="a_final_change_vel" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_A_1.vtu")
-dt = stat("MMS_A.stat")["dt"]["value"][-1]
-a_final_change_vel = max(max(abs(vtu.GetVectorField("Velocity")[:,0]-vtu.GetVectorField("OldVelocity")[:,0])/dt), max(abs(vtu.GetVectorField("Velocity")[:,1]-vtu.GetVectorField("OldVelocity")[:,1])/dt))
-    </variable>
-    <variable name="b_final_change_vel" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_B_1.vtu")
-dt = stat("MMS_B.stat")["dt"]["value"][-1]
-b_final_change_vel = max(max(abs(vtu.GetVectorField("Velocity")[:,0]-vtu.GetVectorField("OldVelocity")[:,0])/dt), max(abs(vtu.GetVectorField("Velocity")[:,1]-vtu.GetVectorField("OldVelocity")[:,1])/dt))
-    </variable>
-    <variable name="c_final_change_vel" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_C_1.vtu")
-dt = stat("MMS_C.stat")["dt"]["value"][-1]
-c_final_change_vel = max(max(abs(vtu.GetVectorField("Velocity")[:,0]-vtu.GetVectorField("OldVelocity")[:,0])/dt), max(abs(vtu.GetVectorField("Velocity")[:,1]-vtu.GetVectorField("OldVelocity")[:,1])/dt))
-    </variable>
-    <variable name="d_final_change_vel" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_D_1.vtu")
-dt = stat("MMS_D.stat")["dt"]["value"][-1]
-d_final_change_vel = max(max(abs(vtu.GetVectorField("Velocity")[:,0]-vtu.GetVectorField("OldVelocity")[:,0])/dt), max(abs(vtu.GetVectorField("Velocity")[:,1]-vtu.GetVectorField("OldVelocity")[:,1])/dt))
-    </variable>
-    <variable name="a_final_change_p" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_A_1.vtu")
-dt = stat("MMS_A.stat")["dt"]["value"][-1]
-a_final_change_p = max(abs(vtu.GetScalarField("Pressure")-vtu.GetScalarField("OldPressure"))/dt)
-    </variable>
-    <variable name="b_final_change_p" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_B_1.vtu")
-dt = stat("MMS_B.stat")["dt"]["value"][-1]
-b_final_change_p = max(abs(vtu.GetScalarField("Pressure")-vtu.GetScalarField("OldPressure"))/dt)
-    </variable>
-    <variable name="c_final_change_p" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_C_1.vtu")
-dt = stat("MMS_C.stat")["dt"]["value"][-1]
-c_final_change_p = max(abs(vtu.GetScalarField("Pressure")-vtu.GetScalarField("OldPressure"))/dt)
-    </variable>
-    <variable name="d_final_change_p" language="python">
-import vtktools
-from fluidity_tools import stat_parser as stat
-vtu = vtktools.vtu("MMS_D_1.vtu")
-dt = stat("MMS_D.stat")["dt"]["value"][-1]
-d_final_change_p = max(abs(vtu.GetScalarField("Pressure")-vtu.GetScalarField("OldPressure"))/dt)
-    </variable>
-  </variables>
-  <pass_tests>
-    <test name="ab_convergence_vel_x: L2 order > 0.9" language="python">
-assert(ab_convergence_vel[0][0] &gt; 0.9)
-    </test>
-    <test name="ab_convergence_vel_y: L2 order > 0.9" language="python">
-assert(ab_convergence_vel[1][0] &gt; 0.9)
-    </test>
-    <test name="ab_convergence_p: L2 order > 0.9" language="python">
-assert(ab_convergence_p[0] &gt; 0.9)
-    </test>
-    <test name="bc_convergence_vel_x: L2 order > 0.9" language="python">
-assert(bc_convergence_vel[0][0] &gt; 0.9)
-    </test>
-    <test name="bc_convergence_vel_y: L2 order > 0.9" language="python">
-assert(bc_convergence_vel[1][0] &gt; 0.9)
-    </test>
-    <test name="bc_convergence_p: L2 order > 0.9" language="python">
-assert(bc_convergence_p[0] &gt; 0.9)
-    </test>
-    <test name="cd_convergence_vel_x: L2 order > 0.9" language="python">
-assert(cd_convergence_vel[0][0] &gt; 0.9)
-    </test>
-    <test name="cd_convergence_vel_y: L2 order > 0.9" language="python">
-assert(cd_convergence_vel[1][0] &gt; 0.9)
-    </test>
-    <test name="cd_convergence_p: L2 order > 0.9" language="python">
-assert(cd_convergence_p[0] &gt; 0.9)
-    </test>
-    <test name="checking A finished in less than 0.03" language="python">
-assert(a_finish_time -0.03 &lt; 1.E-10)
-    </test>
-    <test name="checking B finished in less than 0.03" language="python">
-assert(b_finish_time -0.03 &lt; 1.E-10)
-    </test>
-    <test name="checking C finished in less than 0.03" language="python">
-assert(c_finish_time -0.03 &lt; 1.E-10)
-    </test>
-    <test name="checking D finished in less than 0.03" language="python">
-assert(d_finish_time -0.03 &lt; 1.E-10)
-    </test>
-    <test name="checking steady state was reached in A vel" language="python">
-assert(a_final_change_vel &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in B vel" language="python">
-assert(b_final_change_vel &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in C vel" language="python">
-assert(c_final_change_vel &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in D vel" language="python">
-assert(d_final_change_vel &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in A p" language="python">
-assert(a_final_change_p &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in B p" language="python">
-assert(b_final_change_p &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in C p" language="python">
-assert(c_final_change_p &lt; 1.E-3)
-    </test>
-    <test name="checking steady state was reached in D p" language="python">
-assert(d_final_change_p &lt; 1.E-3)
-    </test>
-  </pass_tests>
-  <warn_tests>
-  </warn_tests>
-</testproblem>
-

=== removed directory 'tests/Stokes_mms_p0p1cv/src'
=== removed file 'tests/Stokes_mms_p0p1cv/src/MMS_A.geo'
--- tests/Stokes_mms_p0p1cv/src/MMS_A.geo	2010-05-07 20:23:24 +0000
+++ tests/Stokes_mms_p0p1cv/src/MMS_A.geo	1970-01-01 00:00:00 +0000
@@ -1,15 +0,0 @@
-Point(1) = {0.0,0.0,0,0.32};
-Point(2) = {3.1415926535897931,0.0,0,0.32};
-Point(3) = {3.1415926535897931,3.1415926535897931,0,0.32};
-Point(4) = {0.0,3.1415926535897931,0,0.32};
-Line(1) = {4,3};
-Line(2) = {3,2};
-Line(3) = {2,1};
-Line(4) = {1,4};
-Line Loop(5) = {1,2,3,4};
-Plane Surface(6) = {5};
-Physical Line(7) = {3};
-Physical Line(8) = {2};
-Physical Line(9) = {1};
-Physical Line(10) = {4};
-Physical Surface(12) = {6};

=== removed file 'tests/Stokes_mms_p0p1cv/src/MMS_A.msh'
--- tests/Stokes_mms_p0p1cv/src/MMS_A.msh	2010-05-07 20:23:24 +0000
+++ tests/Stokes_mms_p0p1cv/src/MMS_A.msh	1970-01-01 00:00:00 +0000
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=== removed file 'tests/Stokes_mms_p0p1cv/src/MMS_B.geo'
--- tests/Stokes_mms_p0p1cv/src/MMS_B.geo	2010-05-07 20:23:24 +0000
+++ tests/Stokes_mms_p0p1cv/src/MMS_B.geo	1970-01-01 00:00:00 +0000
@@ -1,15 +0,0 @@
-Point(1) = {0.0,0.0,0,0.16};
-Point(2) = {3.1415926535897931,0.0,0,0.16};
-Point(3) = {3.1415926535897931,3.1415926535897931,0,0.16};
-Point(4) = {0.0,3.1415926535897931,0,0.16};
-Line(1) = {4,3};
-Line(2) = {3,2};
-Line(3) = {2,1};
-Line(4) = {1,4};
-Line Loop(5) = {1,2,3,4};
-Plane Surface(6) = {5};
-Physical Line(7) = {3};
-Physical Line(8) = {2};
-Physical Line(9) = {1};
-Physical Line(10) = {4};
-Physical Surface(12) = {6};

=== removed file 'tests/Stokes_mms_p0p1cv/src/MMS_B.msh'
--- tests/Stokes_mms_p0p1cv/src/MMS_B.msh	2010-05-07 20:23:24 +0000
+++ tests/Stokes_mms_p0p1cv/src/MMS_B.msh	1970-01-01 00:00:00 +0000
@@ -1,1291 +0,0 @@
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-$EndElements

=== removed file 'tests/Stokes_mms_p0p1cv/src/MMS_C.geo'
--- tests/Stokes_mms_p0p1cv/src/MMS_C.geo	2010-05-07 20:23:24 +0000
+++ tests/Stokes_mms_p0p1cv/src/MMS_C.geo	1970-01-01 00:00:00 +0000
@@ -1,15 +0,0 @@
-Point(1) = {0.0,0.0,0,0.08};
-Point(2) = {3.1415926535897931,0.0,0,0.08};
-Point(3) = {3.1415926535897931,3.1415926535897931,0,0.08};
-Point(4) = {0.0,3.1415926535897931,0,0.08};
-Line(1) = {4,3};
-Line(2) = {3,2};
-Line(3) = {2,1};
-Line(4) = {1,4};
-Line Loop(5) = {1,2,3,4};
-Plane Surface(6) = {5};
-Physical Line(7) = {3};
-Physical Line(8) = {2};
-Physical Line(9) = {1};
-Physical Line(10) = {4};
-Physical Surface(12) = {6};

=== removed file 'tests/Stokes_mms_p0p1cv/src/MMS_C.msh'
--- tests/Stokes_mms_p0p1cv/src/MMS_C.msh	2010-05-07 20:23:24 +0000
+++ tests/Stokes_mms_p0p1cv/src/MMS_C.msh	1970-01-01 00:00:00 +0000
@@ -1,4828 +0,0 @@
-$MeshFormat
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-$EndMeshFormat
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