Merge lp:~al-maisan/ubuntu/karmic/pristine-tar/gendelta-fix into lp:ubuntu/karmic/pristine-tar

[Muharem Hrnjadovic]

[Muharem Hrnjadovic (al-maisan)]

Hello there!

This branch fixes a shortcoming of pristine-tar's gendelta command: when there are files present in the tarball but missing in the unpacked local tree it happily creates the delta as opposed to aborting.

The real problem here is that a subsequent gentar command will fail since files referenced in the generated delta are missing from the local tree.

Please see also bug #424451.

[lp:~al-maisan/ubuntu/karmic/pristine-tar/gendelta-fix]

8. By Muharem Hrnjadovic on 2009-09-08

This fixes the errors pointed out by the pristine-tar maintainer: the gendelta check

    - fails if run outside a source tree
    - assumes that the manifest generated by tar always puts files in a
      subdirectory

9. By Muharem Hrnjadovic on 2009-09-08

Refactored the new code into its own module, started adding tests.

10. By Muharem Hrnjadovic on 2009-09-08

More code refactoring; the code that picks a representative local path
and the associated manifest paths that share the same base name is now
in its own method (pickpaths()).

11. By Muharem Hrnjadovic on 2009-09-08

More tests and resulting bug fixes.

12. By Muharem Hrnjadovic on 2009-09-09

Work in progress, more tests and debugging needed.

[James Westby (james-w)]

Hi,

Joey has highlighted some issues with this change in the Debian
bug. Please work with him on how this issue should be solved.

Thanks,

James

review: Disapprove

[lp:~al-maisan/ubuntu/karmic/pristine-tar/gendelta-fix]

13. By Muharem Hrnjadovic on 2009-09-09

Refactored the code. Also removed paths that are substrings of the path prefixes foud.

14. By Muharem Hrnjadovic on 2009-09-09

Finally got the computation of the local/manifest path prefixes right.

15. By Muharem Hrnjadovic on 2009-09-09

Added tests for the checkmanifest() fnction.

16. By Muharem Hrnjadovic on 2009-09-09

Cosmetic fixes.

17. By Muharem Hrnjadovic on 2009-09-23

Teaching pristine-tar to handle unicode characters in paths.

18. By Muharem Hrnjadovic on 2009-09-23

Cosmetic fix.

19. By Muharem Hrnjadovic on 2009-09-24

Removed superfluous import.

20. By Muharem Hrnjadovic on 2009-09-24

Following bugs fixed:

    - regex meta characters in path prefixes need escaping
    - paths which are prefixes of path prefixes shall not be purged

21. By Muharem Hrnjadovic on 2009-09-24

Multiple slashes in manifest paths need to be condensed to one in order to facilitate path comparison.

22. By Muharem Hrnjadovic on 2009-09-24

Some packages don't have a single proper file in them (example: binutils-z80_2.19.51.20090827-2). Use symlinks in addition to files to find path prefixes. Fix unit tests.

23. By Muharem Hrnjadovic on 2009-09-24

Added comment.

24. By Muharem Hrnjadovic on 2009-09-24

Improved the logic that finds the local/manifest path prefixes (now a number of path combination is considered increasing the probability that a full match will be found).

25. By Muharem Hrnjadovic on 2009-09-24

Fixed another bunch of bugs. Also, randomized the local/manifest path samples used to figure out the respective prefixes.

26. By Muharem Hrnjadovic on 2009-09-24

Minor fix: escape any regex meta characters in the file base name sought.

27. By Muharem Hrnjadovic on 2009-09-24

Tidied up comments.

28. By Muharem Hrnjadovic on 2009-09-25

Fixed regex so that manifest paths w/o any prefix whatsoever are recognized during path sample selection.

29. By Muharem Hrnjadovic on 2009-09-25

Various bug fixes and refinements re. path prefix calculation.

30. By Muharem Hrnjadovic on 2009-09-25

Reduced logging.

31. By Muharem Hrnjadovic on 2009-09-25

Some packages have huge numbers of repetitive file names (e.g..: chameleon-cursor-theme).

32. By Muharem Hrnjadovic on 2009-09-25

Increase the number of samples for path prefix calculation to make sure we get some with small number of manifest paths as well. These will be checked first.

33. By Muharem Hrnjadovic on 2009-09-25

Six path prefix samples seem to be a good compromise.

34. By Muharem Hrnjadovic on 2009-09-25

Minor code clean-up.

35. By Muharem Hrnjadovic on 2009-09-25

Fixed bug that occurred if the first sample found only had a single manifest path.

36. By Muharem Hrnjadovic on 2009-09-25

Cosmetic change.

37. By Muharem Hrnjadovic on 2009-09-25

We now search path samples (for prefix calculation) starting from the manifest paths.

38. By Muharem Hrnjadovic on 2009-09-25

Prefixes are now computed in reversed order and need to be returned in that order as well.

39. By Muharem Hrnjadovic on 2009-09-25

Added a short-cut for the most common case where no prefix stripping is needed.

40. By Muharem Hrnjadovic on 2009-09-25

Another optimization for the most common case: no path prefix stripping needed.

41. By Muharem Hrnjadovic on 2009-09-26

Adding test script and package list.

42. By Muharem Hrnjadovic on 2009-09-26

Fixed part of the unit tests.

43. By Muharem Hrnjadovic on 2009-09-26

More refined path prefix calculation:

    - manifest paths are sorted by base name frequency before picking samples
    - we try to finish earlier in case of partial prefix matches
    - in case where that's not possible we look at all computed partial
      prefixes and return the one that occurs (was computed) most frequently
      (majority vote).

44. By Muharem Hrnjadovic on 2009-09-26

reduced logging.

45. By Muharem Hrnjadovic on 2009-09-26

Prefixes are to be swapped in analyze_partial_matches() in order to accommodate for the (worst) case where we are not breaking early.

46. By Muharem Hrnjadovic on 2009-09-27

Much simplified prefix calculation based on common prefixes inside the respective local/manifest path sets.

47. By Muharem Hrnjadovic on 2009-09-27

Dramatically simplified path prefix calculation.

48. By Muharem Hrnjadovic on 2009-09-27

Trunk merge.

49. By Muharem Hrnjadovic on 2009-09-27

Make sure the path prefixes found do end on a path segment boundary.

50. By Muharem Hrnjadovic on 2009-09-27

Refined picking of path samples.

51. By Muharem Hrnjadovic on 2009-09-27

Checking for the presence of the user supplied local path now.

52. By Muharem Hrnjadovic on 2009-09-27

More path prefix computation gotchas (fixed).

53. By Muharem Hrnjadovic on 2009-09-27

Removed unnecessary code.

54. By Muharem Hrnjadovic on 2009-09-27

Simplified the sorting performed prior to picking path samples.

55. By Muharem Hrnjadovic on 2009-09-27

Cleaned up code in pick2paths().

56. By Muharem Hrnjadovic on 2009-09-27

Cleaned up code and unit tests.

57. By Muharem Hrnjadovic on 2009-09-27

Added a heuristic that allows us to try finding the paths required in a 2nd attempt and w/o path prefixes if we fail the first time around (example package: bulmacont).

58. By Muharem Hrnjadovic on 2009-09-27

Reduced diagnostic output.

59. By Muharem Hrnjadovic on 2009-10-13

Cleaned up test driver script a bit.

60. By Muharem Hrnjadovic on 2009-10-14

If files are missing we use the prefix found for the files in the tar manifest locally as well before giving up.

61. By Muharem Hrnjadovic on 2009-10-14

Test driver script now detects better the location of unpacked tar files.

62. By Muharem Hrnjadovic on 2009-10-14

More test driver enhancements.

63. By Muharem Hrnjadovic on 2009-10-14

Turned off test mode.

64. By Muharem Hrnjadovic on 2009-10-14

Removed superfluous imports.

65. By Muharem Hrnjadovic on 2009-10-14

Minor enhancement.

Unmerged revisions

65. By Muharem Hrnjadovic on 2009-10-14

Minor enhancement.

64. By Muharem Hrnjadovic on 2009-10-14

Removed superfluous imports.

63. By Muharem Hrnjadovic on 2009-10-14

Turned off test mode.

62. By Muharem Hrnjadovic on 2009-10-14

More test driver enhancements.

61. By Muharem Hrnjadovic on 2009-10-14

Test driver script now detects better the location of unpacked tar files.

60. By Muharem Hrnjadovic on 2009-10-14

If files are missing we use the prefix found for the files in the tar manifest locally as well before giving up.

59. By Muharem Hrnjadovic on 2009-10-13

Cleaned up test driver script a bit.

58. By Muharem Hrnjadovic on 2009-09-27

Reduced diagnostic output.

57. By Muharem Hrnjadovic on 2009-09-27

Added a heuristic that allows us to try finding the paths required in a 2nd attempt and w/o path prefixes if we fail the first time around (example package: bulmacont).

56. By Muharem Hrnjadovic on 2009-09-27

Cleaned up code and unit tests.

=== added file 'Ptutils.pm'
--- Ptutils.pm	1970-01-01 00:00:00 +0000
+++ Ptutils.pm	2009-10-14 08:16:12 +0000
@@ -0,0 +1,283 @@
+#!/usr/bin/perl
+=head1 NAME
+
+ptutils - pristine-tar utilities
+
+=head1 DESCRIPTION
+
+Various utility functions used by the pristine-tar tool.
+
+=head1 FUNCTIONS
+
+=over 4
+
+=item checkmanifest
+
+Find all paths that are listed in the gendelta manifest but do *not* exist
+in the local tree.
+
+When the optional "localtree" argument is passed to gendelta it will check
+whether the files required are all present in the local tree and abort if this
+is not the case.
+
+=back
+
+=head1 LIMITATIONS
+
+The gentar gendelta "check local tree" extension was tested extensively
+against the debian tar ball archive but may still occasionally stumble over
+file names (in the tar-generated manifest) that are encoded in ways that
+pristine-tar does not understand, but tar does.
+
+=head1 AUTHOR
+
+Muharem Hrnjadovic <[e-mail]>
+
+Licensed under the GPL, version 2 or above.
+
+=cut
+
+package Ptutils;
+
+use Exporter;
+@ISA = ("Exporter");
+@EXPORT = qw(&checkmanifest);
+
+use strict;
+use warnings;
+use Cwd qw(realpath);
+use Data::Dumper;
+use File::Find;
+use File::Spec::Functions qw(abs2rel canonpath catdir splitdir);
+use List::MoreUtils qw(zip);
+
+my $debug=0;
+
+sub debug {
+	message(@_) if $debug;
+}
+
+sub message {
+	print STDERR "pristine-tar utils: @_\n";
+}
+
+sub checkpathsets {
+    # Check whether all files listed in the manifest are available locally for
+    # agiven pair of prefixes.
+    my $dir_paths=shift;    # local paths
+    my $tar_paths=shift;    # path listed in manifest
+    my $prefixes=shift;     # local/manifest path prefixes
+
+    # Strip off the prefixes.
+    normalizepaths($dir_paths, $tar_paths, $prefixes);
+
+    # Now let's see whether all paths in the manifest can be found locally.
+
+    # Strip off trailing slashes.
+    map { s,/*$,,; } @$prefixes;
+    map { s,/*$,,; } @$tar_paths;
+    debug(sprintf "!!! PFX '%s'", join("', '", @$prefixes));
+
+    # Compute path difference.
+    my %seen;
+    @seen {@$tar_paths} = ();
+    delete @seen {@$dir_paths};
+    delete @seen {@$prefixes};
+
+    my @missing_in_tree = sort(keys %seen);
+    return \@missing_in_tree;
+}
+
+sub checkmanifest {
+    # Find all paths that are listed in the manifest but do *not* exist in
+    # the local tree.
+    my $manifest=shift;
+    my $localtree_path=shift;
+
+    my @manifest_entries = ();
+    my @paths_in_tree = ();
+    my @missing_in_tree;
+
+    (-d $localtree_path) || die "!! No such directory: '$localtree_path', wrong path?";
+
+    find sub { push(@paths_in_tree, canonpath($File::Find::name)) }, abs2rel(realpath($localtree_path));
+
+    open(IN, "<", $manifest) || die "$!";
+    while (<IN>) {
+        chomp $_;
+        # Condense multiple slashes to one.
+        s,//+,/,;
+        # Unicode code points (e.g. \201) are read as text i.e. as four
+        # characters and *not* as a single byte. We convert them to bytes
+        # here.
+        s/\\(\d{3})/"chr(0$1)"/eeg;
+        push(@manifest_entries, $_);
+    }
+    close IN;
+
+    my @lps = @paths_in_tree;
+    my @tps = @manifest_entries;
+
+    # Figure out what the prefixes for the respective path sets might be.
+    my $dir_prefix = compute_representative_path_prefix(\@lps);
+    my $tar_prefix = compute_representative_path_prefix(\@tps);
+
+    return if !defined($dir_prefix) || !defined($tar_prefix);
+    my @prefixes;
+    if ($dir_prefix eq $tar_prefix) {
+        @prefixes = ('', '');
+    }
+    else {
+        @prefixes = ($dir_prefix, $tar_prefix);
+    }
+
+    my ($missing, $missing_in_2nd_attempt, $missing_in_3rd_attempt);
+
+    # Check whether we have all the paths required given the prefixes guessed.
+    $missing = checkpathsets(\@lps, \@tps, \@prefixes);
+    debug(sprintf "-- 1st*AT: files missing, %s", scalar(@$missing));
+
+    if ((scalar(@$missing) > 0) && checkprefixes(\@prefixes)) {
+        # This is in essence guesswork: we did not find all the paths required
+        # based on the prefixes in the first round.
+        # In this 'educated guess' attempt we try to find all that's needed w/o
+        # any prefixes whatsoever.
+        @lps = @paths_in_tree;
+        @tps = @manifest_entries;
+        $missing_in_2nd_attempt = checkpathsets(\@lps, \@tps, ['', '']);
+        debug(sprintf "-- 2nd*AT: files missing, %s", scalar(@$missing_in_2nd_attempt));
+
+        # All paths found? Great! Let the caller know.
+        return $missing_in_2nd_attempt if (scalar(@$missing_in_2nd_attempt) < scalar(@$missing));
+    }
+    if (scalar(@$missing) > 0) {
+        # A last ditch attempt: use the prefix found for the files in the tar
+        # manifest also for the files unpacked on the local file system.
+        switch_to_manifest_prefix(\@prefixes);
+        @lps = @paths_in_tree;
+        @tps = @manifest_entries;
+        $missing_in_3rd_attempt = checkpathsets(\@lps, \@tps, \@prefixes);
+        debug(sprintf "-- 3rd*AT: files missing, %s", scalar(@$missing_in_3rd_attempt));
+
+        # All paths found? Great! Let the caller know.
+        return $missing_in_3rd_attempt if (scalar(@$missing_in_3rd_attempt) < scalar(@$missing));
+    }
+    return $missing;
+}
+
+sub switch_to_manifest_prefix {
+    my $prefixes = shift;
+    my @ldirs = splitdir($$prefixes[0]);
+    my @tdirs = splitdir($$prefixes[1]);
+    $$prefixes[0] = catdir(($ldirs[0], @tdirs[1..$#tdirs]));
+    debug(sprintf "!!! 3rd*AT -> PFX '%s'", join("', '", @$prefixes));
+}
+
+sub checkprefixes {
+    my $prefixes = shift;
+    my ($a, $b) = @$prefixes;
+
+    my $a_is_prefix_of_b = ($a eq substr($b, 0, length $a));
+    my $b_is_prefix_of_a = ($b eq substr($a, 0, length $b));
+
+    return ($a_is_prefix_of_b || $b_is_prefix_of_a);
+}
+
+sub pick2paths {
+    # Pick 2 out of a list of paths so we can compute the common path prefix.
+    my $paths = shift;
+
+    return unless scalar(@$paths) > 1;
+
+    @$paths = sort @$paths;
+
+    # Return the first and the last path for reasons of diversity. This gives
+    # us the highest chance of getting the prefix right.
+    my @picks = ($$paths[0], $$paths[-1]);
+
+    debug(sprintf "/// SOR: %s", Dumper(\@picks));
+    return \@picks;
+}
+
+sub compute_representative_path_prefix {
+    # Given a set of paths, find the prefixes of a "representative" pair of
+    # paths. If the set consists of a sole path just return it.
+    my $paths = shift;
+
+    if (scalar(@$paths) == 1) {
+        return $$paths[0];
+    }
+
+    my $picks = pick2paths($paths);
+
+    return if !defined($picks);
+
+    my ($a, $b) = @$picks;
+
+    my @as = split(//, $a);
+    my @bs = split(//, $b);
+    my @zippedchars = zip @as, @bs;
+    my $counter = 0;
+    my $last_slash_seen_at = -1;
+    my ($achar, $bchar);
+    local *next_pair_of_chars = sub { @zippedchars[2*$counter..2*$counter+1] };
+    local *check_counter = sub { (defined($achar) && ($achar eq '/')) || (defined($bchar) && ($bchar eq '/')) };
+
+    while (($achar, $bchar) = next_pair_of_chars()) {
+        $last_slash_seen_at = $counter if check_counter();
+        last if !defined($achar) || !defined($bchar) || $achar ne $bchar;
+        $counter += 1;
+    }
+    ($achar, $bchar) = next_pair_of_chars();
+    $last_slash_seen_at = $counter if check_counter();
+
+    # Make sure the prefix ends on path segment boundary.
+    my $result;
+    if ($last_slash_seen_at == -1) {
+        $result = '';
+    }
+    else {
+        $result = substr($a, 0, $counter);
+    }
+    $result =~ s,/*$,,;
+    debug(sprintf "... RPP: %s", Dumper($result));
+
+    return $result;
+}
+
+sub normalizepaths {
+    # This procedure
+    #
+    #   - figures out what kind of path prefixes the files
+    #     in the manifest and in the local tree use respectively
+    #   - strips off these prefixes as needed
+    #
+    # so it becomes possible to find out which files in the manifest
+    # are *not* in the local tree.
+
+    # References to the lists that hold the local tree and manifest paths
+    # respectively.
+    my $paths_in_tree = shift;
+    my $manifest_entries = shift;
+    my $prefixes = shift;
+
+    # Any path prefixes found? An empty list indicates a bug or error.
+    my @pathsets = ($paths_in_tree, $manifest_entries);
+    my %pdata = zip @$prefixes, @pathsets;
+    while (my ($prefix, $paths) = each(%pdata)) {
+        # Do we need to strip off prefixes for this set of paths?
+        if (length($prefix) > 0) {
+            # Escape regex meta chars in path prefixes (example:
+            # aptoncd-0.1.98+bzr112)
+            $prefix =~ s![+?*]!\\$&!g;
+            # Pre-compile regex for prefix.
+            my $pre = qr(^$prefix/?);
+            map { $_ = canonpath($_); s,$pre,,; $_ } @$paths;
+        }
+    }
+
+    return;
+}
+
+1;
+

=== modified file 'pristine-tar'
--- pristine-tar	2009-04-14 21:23:22 +0000
+++ pristine-tar	2009-10-14 08:16:12 +0000
@@ -8,7 +8,7 @@
 
 B<pristine-tar> [-vdk] gentar delta tarball
 
-B<pristine-tar> [-vdk] gendelta tarball delta
+B<pristine-tar> [-vdk] [-l localtree] gendelta tarball delta
 
 B<pristine-tar> [-vdk] [-m message] commit tarball [upstream]
 
@@ -39,6 +39,10 @@
 
 If the delta filename is "-", it is written to standard output.
 
+If the optional "localtree" argument is passed gendelta will check whether
+the files required are all present in the local tree and abort if this is
+not the case.
+
 =item pristine-tar gentar 
 
 This takes the specified delta file, and the files in the current
@@ -122,12 +126,17 @@
 
 use warnings;
 use strict;
+use File::Basename;
+use File::Path;
 use File::Temp;
-use File::Path;
-use File::Basename;
 use Getopt::Long;
 use Cwd qw{getcwd abs_path};
 
+use FindBin;
+use lib $FindBin::Bin;
+
+use Ptutils;
+
 # magic identification
 use constant GZIP_ID1            => 0x1F;
 use constant GZIP_ID2            => 0x8B;
@@ -144,6 +153,7 @@
 my $debug=0;
 my $keep=0;
 my $message;
+my $localtree;
 	
 # Force locale to C since tar may output utf-8 filenames differently
 # depending on the locale.
@@ -151,7 +161,7 @@
 
 sub usage {
 	print STDERR "Usage: pristine-tar [-vdk] gentar delta tarball\n";
-	print STDERR "       pristine-tar [-vdk] gendelta tarball delta\n";
+	print STDERR "       pristine-tar [-vdk] [-l localtree] gendelta tarball delta\n";
 	print STDERR "       pristine-tar [-vdk] [-m message] commit tarball [upstream]\n";
 	print STDERR "       pristine-tar [-vdk] checkout tarball\n";
 	exit 1;
@@ -195,13 +205,17 @@
 	my $source=shift;
 	my %options=@_;
 	
-	my @manifest;
-	open (IN, "$tempdir/manifest") || die "$tempdir/manifest: $!";
-	while (<IN>) {
-		chomp;
-		push @manifest, $_;
-	}
-	close IN;
+    my @manifest;
+    open (IN, "$tempdir/manifest") || die "$tempdir/manifest: $!";
+    while (<IN>) {
+        chomp;
+        # Unicode code points (e.g. \201) are read as text i.e. as four
+        # characters and *not* as a single byte. We convert them to bytes
+        # here.
+        s/\\(\d{3})/"chr(0$1)"/eeg;
+        push @manifest, $_;
+    }
+    close IN;
 
 	# The manifest and source should have the same filenames,
 	# but the manifest probably has all the files under a common
@@ -399,6 +413,20 @@
 
 	my $tempdir=tempdir();
 	
+    genmanifest($tarball, "$tempdir/manifest");
+
+    if (defined $localtree) {
+        # Check whether all paths in the manifest are also present in the
+        # local tree.
+        my $missing_in_tree = Ptutils::checkmanifest("$tempdir/manifest", $localtree);
+
+        if ($#$missing_in_tree >= 0) {
+            # Abort here since we don't have all the files required for
+            # generating a pristine tar in the local tree.
+            error("Files missing in local tree: @$missing_in_tree");
+        }
+    }
+
 	my $stdout=0;
 	if ($delta eq "-") {
 		$stdout=1;
@@ -449,7 +477,6 @@
 		$tarball="$tempdir/origtarball";
 	}
 
-	genmanifest($tarball, "$tempdir/manifest");
 	my $recreatetarball;
 	if (! exists $opts{recreatetarball}) {
 		my $sourcedir="$tempdir/tmp";
@@ -746,6 +773,7 @@
 
 Getopt::Long::Configure("bundling");
 if (! GetOptions(
+	"l|localtree=s" => \$localtree,
 	"m|message=s" => \$message,
 	"v|verbose!" => \$verbose,
 	"d|debug!" => \$debug,

=== added directory 't'
=== added file 't/gendelta.t'
--- t/gendelta.t	1970-01-01 00:00:00 +0000
+++ t/gendelta.t	2009-10-14 08:16:12 +0000
@@ -0,0 +1,23 @@
+use Test::More tests => 2;
+use Test::Deep;
+
+use Ptutils;
+
+# Test the code that figures out prefixes to be stripped off of two
+# groups of paths so they can be compared.
+
+my @paths;
+## TEST 01 ##
+@paths = qw(
+    a/b/z/d.4
+    a/b/a/a.1
+    a/b/a/b.2
+    a/b/x/c.3
+    a/b/
+);
+$result = Ptutils::pick2paths(\@paths);
+cmp_deeply($result, ['a/b/', 'a/b/z/d.4']);
+
+$result = Ptutils::compute_representative_path_prefix(\@paths);
+is($result, 'a/b');
+

=== added directory 'test'
=== added file 'test/fixed-package-list-2.txt'
--- test/fixed-package-list-2.txt	1970-01-01 00:00:00 +0000
+++ test/fixed-package-list-2.txt	2009-10-14 08:16:12 +0000
@@ -0,0 +1,32547 @@
+2vcard
+3270-common
+3dchess
+4g8
+6tunnel
+9base
+9menu
+9mount
+9mount-dbg
+9wm
+a2ps
+a2ps-perl-ja
+a52dec
+a52dec-dev
+a56
+a7xpg
+a7xpg-data
+aa3d
+aajm
+aalib1
+aalib-bin
+aap
+aap-doc
+aatv
+abakus
+abcde
+abcm2ps
+abcmidi
+abcmidi-yaps
+abe
+abe-data
+abicheck
+abi-compliance-checker
+abinit
+abinit-doc
+abiword
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