Same error for latest - https://launchpadlibrarian.net/108921057/buildlog_ubuntu-quantal-amd64.gridengine_6.2u5-7.1_FAILEDTOBUILD.txt.gz
>>>
During a rebuild test with default-jdk switched to openjdk-7 (as it is in quantal), a build failure was detected for gridengine version 6.2u5-7build1.
See attached log for full build failure details.
https://wiki.ubuntu.com/JavaTeam/Java7Default contains more details of how to diagnose and resolve these types of issues.
This log snippet might also be of interest:
cd source && sh /«PKGBUILDDIR»/debian/linux32-wrapper ./aimk -only-core
Building in directory: /«PKGBUILDDIR»/source
making in LINUXAMD64_26/ for LINUXAMD64 at host hendrix
_________3_r_d_p_a_r_t_y__J_E_M_A_L_L_O_C_
make[1]: Entering directory `/«PKGBUILDDIR»/source/LINUXAMD64_26'
gcc -DSGE_ARCH_STRING=\"lx26-amd64\" -O3 -Wall -Wstrict-prototypes -DUSE_POLL -DLINUX -DLINUXAMD64 -DLINUXAMD64_26 -D_GNU_SOURCE -DGETHOSTBYNAME_R6 -DGETHOSTBYADDR_R8 -g -DSGE_LOCK_DEBUG -DHAS_IN_PORT_T -DLOAD_OPENSSL -I/usr/include/ -DTARGET_64BIT -DSPOOLING_dynamic -DSECURE -I/usr/include -Wno-strict-aliasing -DCOMPILE_DC -D__SGE_COMPILE_WITH_GETTEXT__ -D__SGE_NO_USERMAPPING__ -Wno-error -DMOZ_MEMORY_LINUX -fPIC -c ../3rdparty/jemalloc/jemalloc.c
../3rdparty/jemalloc/jemalloc.c: In function 'arena_dalloc_large':
../3rdparty/jemalloc/jemalloc.c:4171:10: warning: variable 'size' set but not used [-Wunused-but-set-variable]
../3rdparty/jemalloc/jemalloc.c: In function 'arena_new':
../3rdparty/jemalloc/jemalloc.c:4465:9: warning: variable 'pow2_size' set but not used [-Wunused-but-set-variable]
../3rdparty/jemalloc/jemalloc.c: In function 'sge_init_hook':
../3rdparty/jemalloc/jemalloc.c:6354:4: warning: '__malloc_hook' is deprecated (declared at /usr/include/malloc.h:176) [-Wdeprecated-declarations]
../3rdparty/jemalloc/jemalloc.c:6354:18: warning: assignment from incompatible pointer type [enabled by default]
../3rdparty/jemalloc/jemalloc.c:6355:4: warning: '__realloc_hook' is deprecated (declared at /usr/include/malloc.h:179) [-Wdeprecated-declarations]
../3rdparty/jemalloc/jemalloc.c:6355:19: warning: assignment from incompatible pointer type [enabled by default]
../3rdparty/jemalloc/jemalloc.c:6356:4: warning: '__memalign_hook' is deprecated (declared at /usr/include/malloc.h:183) [-Wdeprecated-declarations]
../3rdparty/jemalloc/jemalloc.c:6356:20: warning: assignment from incompatible pointer type [enabled by default]
../3rdparty/jemalloc/jemalloc.c: At top level:
../3rdparty/jemalloc/jemalloc.c:6359:8: error: conflicting type qualifiers for '__malloc_initialize_hook'
In file included from ../3rdparty/jemalloc/jemalloc.c:6342:0:
/usr/include/malloc.h:170:38: note: previous declaration of '__malloc_initialize_hook' was here
../3rdparty/jemalloc/jemalloc.c:1283:1: warning: 'malloc_spin_init' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:1793:1: warning: 'base_calloc' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:1984:1: warning: 'extent_tree_szad_s_RB_FIND' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:1984:1: warning: 'extent_tree_szad_s_RB_NEXT' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:1984:1: warning: 'extent_tree_szad_s_RB_PREV' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:1984:1: warning: 'extent_tree_szad_s_RB_MINMAX' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:1996:1: warning: 'extent_tree_ad_s_RB_NEXT' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:2695:1: warning: 'arena_chunk_tree_s_RB_NFIND' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:2695:1: warning: 'arena_chunk_tree_s_RB_NEXT' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:2710:1: warning: 'arena_run_tree_s_RB_FIND' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:2710:1: warning: 'arena_run_tree_s_RB_NFIND' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:2710:1: warning: 'arena_run_tree_s_RB_NEXT' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c:2710:1: warning: 'arena_run_tree_s_RB_PREV' defined but not used [-Wunused-function]
../3rdparty/jemalloc/jemalloc.c: In function 'wrtmessage':
../3rdparty/jemalloc/jemalloc.c:1571:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
../3rdparty/jemalloc/jemalloc.c:1572:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
../3rdparty/jemalloc/jemalloc.c:1573:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
../3rdparty/jemalloc/jemalloc.c:1574:8: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
make[1]: *** [jemalloc.o] Error 1
make[1]: Leaving directory `/«PKGBUILDDIR»/source/LINUXAMD64_26'
not done
make: *** [build-stamp] Error 1
dpkg-buildpackage: error: debian/rules build gave error exit status 2
────────────────────────────────────────────────────────────────────────────────
Build finished at 20120602-0312
Finished
────────
E: Build failure (dpkg-buildpackage died)
This bug was fixed in the package gridengine - 6.2u5-7.1ubuntu1
---------------
gridengine (6.2u5-7.1ubuntu1) quantal; urgency=low
* Fix build failure with glibc-2.15. LP: #1009456.
-- Matthias Klose <email address hidden> Wed, 19 Sep 2012 11:04:06 +0200