1
=== added directory 'trunk'
2
=== added file 'trunk/AUTHORS'
3
--- trunk/AUTHORS	1970-01-01 00:00:00 +0000
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+++ trunk/AUTHORS	2013-05-08 08:43:26 +0000
5
@@ -0,0 +1,33 @@
6
1
#############################################################
7
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##							   ##
8
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## Copyright (c) 2003-2011 by The University of Queensland ##
9
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## Earth Systems Science Computational Centre (ESSCC)	   ##
10
5
## http://www.uq.edu.au/esscc				   ##
11
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##							   ##
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## Primary Business: Brisbane, Queensland, Australia	   ##
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## Licensed under the Open Software License version 3.0	   ##
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## http://www.opensource.org/licenses/osl-3.0.php	   ##
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##							   ##
16
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#############################################################
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ESyS-Particle is a community Open Source Software project. 
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ESyS-Particle software contributors include:
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S. Abe (2000-)
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C. Altinay (2008-)
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V. Boros (2009-)
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20
F. Chen (2010)
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21
M. Griffa (2011)
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22
W. Hancock (2008-)
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23
L. Heredia (2009)
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24
S. Latham (2005-2007)
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25
P. Mora (1994-)
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26
W. Pettersson (2008-2011)
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27
D. Place (1994-2002)
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28
P. Richeri (2009)
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29
G. Tancredi (2009)
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30
Y. Wang (2002-2008)
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31
D. Weatherley (2007-)
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32
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For further information about ESyS-Particle authors, email d.weatherley@uq.edu.au
39
0
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=== added file 'trunk/BuildInstructions.pdf'
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1
Binary files trunk/BuildInstructions.pdf	1970-01-01 00:00:00 +0000 and trunk/BuildInstructions.pdf	2013-05-08 08:43:26 +0000 differ
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Binary files trunk/BuildInstructions.pdf	1970-01-01 00:00:00 +0000 and trunk/BuildInstructions.pdf	2013-05-08 08:43:26 +0000 differ
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=== added file 'trunk/CMakeLists.txt'
43
--- trunk/CMakeLists.txt	1970-01-01 00:00:00 +0000
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+++ trunk/CMakeLists.txt	2013-05-08 08:43:26 +0000
45
@@ -0,0 +1,89 @@
46
1
cmake_minimum_required(VERSION 2.6)
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3
project(ESyS-Particle-v2.1)
49
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set(CMAKE_BUILD_TYPE Release)
51
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7
# set(TOP_SRC_DIR "C:/SVWork/DEMDev/ESyS-Particle-2.1_vc9")
53
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set(TOP_SRC_DIR ${CMAKE_CURRENT_SOURCE_DIR})
54
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# set(TOP_BUILD_DIR ${TOP_SRC_DIR}/build)
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set(TOP_BUILD_DIR ${CMAKE_CURRENT_BINARY_DIR})
56
11
57
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set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${TOP_BUILD_DIR}/output)
58
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set(LIBRARY_OUTPUT_PATH  ${TOP_BUILD_DIR}/lib)
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set(EXECUTABLE_OUTPUT_PATH ${TOP_BUILD_DIR}/exe)
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set(OMPI_INCLUDES "C:/Program Files (x86)/OpenMPI_v1.5.3-win32/include")
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set(OMPI_LIB_PATH "C:/Program Files (x86)/OpenMPI_v1.5.3-win32/lib")
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set(OMPI_CORE_LIBS "libmpi.lib" "libmpi_cxx.lib" "libopen-pal.lib" "libopen-rte.lib")
64
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# set(PYTHON_INCLUDES "C:/Python27/include")
66
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# set(PYTHON_LIB_PATH "C:/Python27/libs")
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set(PYTHON_INCLUDES "C:/Python-2.7.2/Include" "C:/Python-2.7.2/PC")
69
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set(PYTHON_LIB_PATH "C:/Python-2.7.2/PCbuild")
70
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set(BOOST_INCLUDES "C:/Program Files (x86)/boost/boost_1_47")
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set(BOOST_LIB_PATH "C:/Program Files (x86)/boost/boost_1_47/lib")
73
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SET(ESYS_INCLUDES 
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    ${TOP_SRC_DIR}/Foundation 
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	${TOP_SRC_DIR}/Geometry
77
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	${TOP_SRC_DIR}/Parallel 
78
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	${TOP_SRC_DIR}/Model 
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	${TOP_SRC_DIR}/pis
80
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	)
81
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SET(ESYS_LIB_PATH )
82
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cmake_policy(SET CMP0015 OLD)
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ADD_DEFINITIONS(-DWIN32 -DWINDOWS)
86
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ADD_DEFINITIONS(-DNOMINMAX -D_USE_MATH_DEFINES -D_CRT_SECURE_NO_WARNINGS)
87
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ADD_DEFINITIONS(-wd4251 -wd4244 -wd4800 -wd4305 -wd4819 -wd4101)
88
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ADD_DEFINITIONS(-DOMPI_IMPORTS -DOPAL_IMPORTS -DORTE_IMPORTS)
89
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90
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include_directories(${TOP_SRC_DIR} ${OMPI_INCLUDES} ${BOOST_INCLUDES} ${ESYS_INCLUDES} ${PYTHON_INCLUDES})
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link_directories(${OMPI_LIB_PATH} ${BOOST_LIB_PATH} ${ESYS_LIB_PATH} ${PYTHON_LIB_PATH})
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add_subdirectory(Foundation)
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add_subdirectory(Geometry)
95
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add_subdirectory(tml)
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add_subdirectory(ntable)
97
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add_subdirectory(ppa)
98
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add_subdirectory(pis)
99
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add_subdirectory(Fields)
100
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add_subdirectory(ParallelModel)
101
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add_subdirectory(MainBE)
102
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add_subdirectory(Python)
103
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add_subdirectory(Tools)
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60
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########### install files ###############
107
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109
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#original Makefile.am contents follow:
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##############################################################
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###                                                         ##
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### Copyright (c) 2003-2011 by The University of Queensland ##
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### Earth Systems Science Computational Centre (ESSCC)      ##
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### http://www.uq.edu.au/esscc                              ##
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###                                                         ##
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### Primary Business: Brisbane, Queensland, Australia       ##
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### Licensed under the Open Software License version 3.0    ##
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### http://www.opensource.org/licenses/osl-3.0.php          ##
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###                                                         ##
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##############################################################
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#
125
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###
126
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#
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#include $(top_srcdir)/Config/Cpp.am
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83
#
129
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#SUBDIRS = libltdl Foundation ntable tml ppa pis Geometry Model Fields Parallel MainBE Tools Python 
130
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#
131
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#ACLOCAL_AMFLAGS = -I Config
132
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#
133
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#EXTRA_DIST = Config/pkg.m4 Config/cppunit.m4 Config/libtool.m4
134
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#
135
0
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=== added file 'trunk/COPYING'
137
--- trunk/COPYING	1970-01-01 00:00:00 +0000
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+++ trunk/COPYING	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,11 @@
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#############################################################
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##							   ##
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## Copyright (c) 2003-2011 by The University of Queensland ##
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## Earth Systems Science Computational Centre (ESSCC)	   ##
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## http://www.uq.edu.au/esscc				   ##
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##							   ##
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## Primary Business: Brisbane, Queensland, Australia	   ##
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## Licensed under the Open Software License version 3.0	   ##
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## http://www.opensource.org/licenses/osl-3.0.php	   ##
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##							   ##
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#############################################################
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0
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=== added file 'trunk/COPYRIGHT'
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--- trunk/COPYRIGHT	1970-01-01 00:00:00 +0000
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+++ trunk/COPYRIGHT	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,11 @@
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1
#############################################################
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##							   ##
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## Copyright (c) 2003-2011 by The University of Queensland ##
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## Earth Systems Science Computational Centre (ESSCC)	   ##
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## http://www.uq.edu.au/esscc				   ##
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##							   ##
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## Primary Business: Brisbane, Queensland, Australia	   ##
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## Licensed under the Open Software License version 3.0	   ##
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## http://www.opensource.org/licenses/osl-3.0.php	   ##
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##							   ##
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#############################################################
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=== added file 'trunk/ChangeLog'
169
--- trunk/ChangeLog	1970-01-01 00:00:00 +0000
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+++ trunk/ChangeLog	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,15 @@
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1
#############################################################
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##							   ##
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## Copyright (c) 2003-2011 by The University of Queensland ##
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## Earth Systems Science Computational Centre (ESSCC)	   ##
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## http://www.uq.edu.au/esscc				   ##
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##							   ##
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## Primary Business: Brisbane, Queensland, Australia	   ##
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## Licensed under the Open Software License version 3.0	   ##
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## http://www.opensource.org/licenses/osl-3.0.php	   ##
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##							   ##
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#############################################################
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For information on source code changes, please visit the 
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ESyS-Particle SVN repository browser:
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https://svn.esscc.uq.edu.au/listing.php?repname=esys3++(contains+Esys-particle)&path=%2Flsm%2F&rev=0&sc=0
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=== added directory 'trunk/Config'
189
=== added file 'trunk/Config/Cpp.am'
190
--- trunk/Config/Cpp.am	1970-01-01 00:00:00 +0000
191
+++ trunk/Config/Cpp.am	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,14 @@
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#############################################################
194
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##                                                         ##
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## Copyright (c) 2003-2011 by The University of Queensland ##
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## Earth Systems Science Computational Centre (ESSCC)      ##
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## http://www.uq.edu.au/esscc                              ##
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##                                                         ##
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## Primary Business: Brisbane, Queensland, Australia       ##
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## Licensed under the Open Software License version 3.0    ##
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## http://www.opensource.org/licenses/osl-3.0.php          ##
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##                                                         ##
203
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#############################################################
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AM_CPPFLAGS = "-I$(top_srcdir)" $(BOOST_CPPFLAGS)
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AM_LDFLAGS = -release $(PACKAGE_VERSION)
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0
\ No newline at end of file
15
\ No newline at end of file
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1
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=== added file 'trunk/Config/Python.am'
210
--- trunk/Config/Python.am	1970-01-01 00:00:00 +0000
211
+++ trunk/Config/Python.am	2013-05-08 08:43:26 +0000
212
@@ -0,0 +1,45 @@
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1
#############################################################
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##                                                         ##
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## Copyright (c) 2003-2011 by The University of Queensland ##
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## Earth Systems Science Computational Centre (ESSCC)      ##
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## http://www.uq.edu.au/esscc                              ##
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##                                                         ##
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## Primary Business: Brisbane, Queensland, Australia       ##
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## Licensed under the Open Software License version 3.0    ##
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## http://www.opensource.org/licenses/osl-3.0.php          ##
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##                                                         ##
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#############################################################
224
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225
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##
226
14
#
227
15
# Begin $(top_srcdir)/Config/Python.am
228
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#
229
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##
230
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include $(top_srcdir)/Config/Cpp.am
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lsmdatadocdir         = $(datadir)/doc/$(PACKAGE)-$(VERSION)
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pythonapidocdir       = $(lsmdatadocdir)/pythonapi
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esysdir               = $(pythondir)/esys
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lsmdir                = $(esysdir)/lsm
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lsmdocdir             = $(lsmdir)/doc
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lsmbenchmarksdir      = $(lsmdir)/benchmarks
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lsmbenchmarkscompressdir = $(lsmbenchmarksdir)/compress
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29
lsmbenchmarksgouge2ddir = $(lsmbenchmarksdir)/gouge2d
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lsmexamplesdir        = $(lsmdir)/examples
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lsmexamplessimpledir  = $(lsmexamplesdir)/simple
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lsmexampleswavepropdir= $(lsmexamplesdir)/waveprop
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33
lsmtoolsdir           = $(lsmdir)/tools
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34
lsmutildir            = $(lsmdir)/util
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lsmgeometrydir        = $(lsmdir)/geometry
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lsmsimdir             = $(lsmdir)/sim
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lsmsimcoupleddir      = $(lsmsimdir)/coupled
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lsmvisdir             = $(lsmdir)/vis
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lsmviscoredir         = $(lsmvisdir)/core
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lsmvisvtkdir          = $(lsmvisdir)/vtk
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lsmvispovraydir       = $(lsmvisdir)/povray
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42
255
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PYTHON_DLL_EXT = .so
256
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AM_CPPFLAGS += $(PYTHON_CPPFLAGS)
258
0
46
259
=== added file 'trunk/Config/ax_boost_base.m4'
260
--- trunk/Config/ax_boost_base.m4	1970-01-01 00:00:00 +0000
261
+++ trunk/Config/ax_boost_base.m4	2013-05-08 08:43:26 +0000
262
@@ -0,0 +1,219 @@
263
1
# ===========================================================================
264
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#          http://www.nongnu.org/autoconf-archive/ax_boost_base.html
265
3
# ===========================================================================
266
4
#
267
5
# SYNOPSIS
268
6
#
269
7
#   AX_BOOST_BASE([MINIMUM-VERSION])
270
8
#
271
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# DESCRIPTION
272
10
#
273
11
#   Test for the Boost C++ libraries of a particular version (or newer)
274
12
#
275
13
#   If no path to the installed boost library is given the macro searchs
276
14
#   under /usr, /usr/local, /opt and /opt/local and evaluates the
277
15
#   $BOOST_ROOT environment variable. Further documentation is available at
278
16
#   <http://randspringer.de/boost/index.html>.
279
17
#
280
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#   This macro calls:
281
19
#
282
20
#     AC_SUBST(BOOST_CPPFLAGS) / AC_SUBST(BOOST_LDFLAGS)
283
21
#
284
22
#   And sets:
285
23
#
286
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#     HAVE_BOOST
287
25
#
288
26
# LICENSE
289
27
#
290
28
#   Copyright (c) 2008 Thomas Porschberg <thomas@randspringer.de>
291
29
#
292
30
#   Copying and distribution of this file, with or without modification, are
293
31
#   permitted in any medium without royalty provided the copyright notice
294
32
#   and this notice are preserved.
295
33
296
34
AC_DEFUN([AX_BOOST_BASE],
297
35
[
298
36
AC_ARG_WITH([boost],
299
37
	AS_HELP_STRING([--with-boost@<:@=DIR@:>@], [use boost (default is yes) - it is possible to specify the root directory for boost (optional)]),
300
38
	[
301
39
    if test "$withval" = "no"; then
302
40
		want_boost="no"
303
41
    elif test "$withval" = "yes"; then
304
42
        want_boost="yes"
305
43
        ac_boost_path=""
306
44
    else
307
45
	    want_boost="yes"
308
46
        ac_boost_path="$withval"
309
47
	fi
310
48
    ],
311
49
    [want_boost="yes"])
312
50
313
51
314
52
AC_ARG_WITH([boost-libdir],
315
53
        AS_HELP_STRING([--with-boost-libdir=LIB_DIR],
316
54
        [Force given directory for boost libraries. Note that this will overwrite library path detection, so use this parameter only if default library detection fails and you know exactly where your boost libraries are located.]),
317
55
        [
318
56
        if test -d $withval
319
57
        then
320
58
                ac_boost_lib_path="$withval"
321
59
        else
322
60
                AC_MSG_ERROR(--with-boost-libdir expected directory name)
323
61
        fi
324
62
        ],
325
63
        [ac_boost_lib_path=""]
326
64
)
327
65
328
66
if test "x$want_boost" = "xyes"; then
329
67
	boost_lib_version_req=ifelse([$1], ,1.20.0,$1)
330
68
	boost_lib_version_req_shorten=`expr $boost_lib_version_req : '\([[0-9]]*\.[[0-9]]*\)'`
331
69
	boost_lib_version_req_major=`expr $boost_lib_version_req : '\([[0-9]]*\)'`
332
70
	boost_lib_version_req_minor=`expr $boost_lib_version_req : '[[0-9]]*\.\([[0-9]]*\)'`
333
71
	boost_lib_version_req_sub_minor=`expr $boost_lib_version_req : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
334
72
	if test "x$boost_lib_version_req_sub_minor" = "x" ; then
335
73
		boost_lib_version_req_sub_minor="0"
336
74
    	fi
337
75
	WANT_BOOST_VERSION=`expr $boost_lib_version_req_major \* 100000 \+  $boost_lib_version_req_minor \* 100 \+ $boost_lib_version_req_sub_minor`
338
76
	AC_MSG_CHECKING(for boostlib >= $boost_lib_version_req)
339
77
	succeeded=no
340
78
341
79
	dnl first we check the system location for boost libraries
342
80
	dnl this location ist chosen if boost libraries are installed with the --layout=system option
343
81
	dnl or if you install boost with RPM
344
82
	if test "$ac_boost_path" != ""; then
345
83
		BOOST_LDFLAGS="-L$ac_boost_path/lib"
346
84
		BOOST_CPPFLAGS="-I$ac_boost_path/include"
347
85
	else
348
86
		for ac_boost_path_tmp in /usr /usr/local /opt /opt/local ; do
349
87
			if test -d "$ac_boost_path_tmp/include/boost" && test -r "$ac_boost_path_tmp/include/boost"; then
350
88
				BOOST_LDFLAGS="-L$ac_boost_path_tmp/lib"
351
89
				BOOST_CPPFLAGS="-I$ac_boost_path_tmp/include"
352
90
				break;
353
91
			fi
354
92
		done
355
93
	fi
356
94
357
95
    dnl overwrite ld flags if we have required special directory with
358
96
    dnl --with-boost-libdir parameter
359
97
    if test "$ac_boost_lib_path" != ""; then
360
98
       BOOST_LDFLAGS="-L$ac_boost_lib_path"
361
99
    fi
362
100
363
101
	CPPFLAGS_SAVED="$CPPFLAGS"
364
102
	CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
365
103
	export CPPFLAGS
366
104
367
105
	LDFLAGS_SAVED="$LDFLAGS"
368
106
	LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
369
107
	export LDFLAGS
370
108
371
109
	AC_LANG_PUSH(C++)
372
110
     	AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
373
111
	@%:@include <boost/version.hpp>
374
112
	]], [[
375
113
	#if BOOST_VERSION >= $WANT_BOOST_VERSION
376
114
	// Everything is okay
377
115
	#else
378
116
	#  error Boost version is too old
379
117
	#endif
380
118
	]])],[
381
119
        AC_MSG_RESULT(yes)
382
120
	succeeded=yes
383
121
	found_system=yes
384
122
       	],[
385
123
       	])
386
124
	AC_LANG_POP([C++])
387
125
388
126
389
127
390
128
	dnl if we found no boost with system layout we search for boost libraries
391
129
	dnl built and installed without the --layout=system option or for a staged(not installed) version
392
130
	if test "x$succeeded" != "xyes"; then
393
131
		_version=0
394
132
		if test "$ac_boost_path" != ""; then
395
133
			if test -d "$ac_boost_path" && test -r "$ac_boost_path"; then
396
134
				for i in `ls -d $ac_boost_path/include/boost-* 2>/dev/null`; do
397
135
					_version_tmp=`echo $i | sed "s#$ac_boost_path##" | sed 's/\/include\/boost-//' | sed 's/_/./'`
398
136
					V_CHECK=`expr $_version_tmp \> $_version`
399
137
					if test "$V_CHECK" = "1" ; then
400
138
						_version=$_version_tmp
401
139
					fi
402
140
					VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
403
141
					BOOST_CPPFLAGS="-I$ac_boost_path/include/boost-$VERSION_UNDERSCORE"
404
142
				done
405
143
			fi
406
144
		else
407
145
			for ac_boost_path in /usr /usr/local /opt /opt/local ; do
408
146
				if test -d "$ac_boost_path" && test -r "$ac_boost_path"; then
409
147
					for i in `ls -d $ac_boost_path/include/boost-* 2>/dev/null`; do
410
148
						_version_tmp=`echo $i | sed "s#$ac_boost_path##" | sed 's/\/include\/boost-//' | sed 's/_/./'`
411
149
						V_CHECK=`expr $_version_tmp \> $_version`
412
150
						if test "$V_CHECK" = "1" ; then
413
151
							_version=$_version_tmp
414
152
	               					best_path=$ac_boost_path
415
153
						fi
416
154
					done
417
155
				fi
418
156
			done
419
157
420
158
			VERSION_UNDERSCORE=`echo $_version | sed 's/\./_/'`
421
159
			BOOST_CPPFLAGS="-I$best_path/include/boost-$VERSION_UNDERSCORE"
422
160
            if test "$ac_boost_lib_path" = ""
423
161
            then
424
162
               BOOST_LDFLAGS="-L$best_path/lib"
425
163
            fi
426
164
427
165
	    		if test "x$BOOST_ROOT" != "x"; then
428
166
				if test -d "$BOOST_ROOT" && test -r "$BOOST_ROOT" && test -d "$BOOST_ROOT/stage/lib" && test -r "$BOOST_ROOT/stage/lib"; then
429
167
					version_dir=`expr //$BOOST_ROOT : '.*/\(.*\)'`
430
168
					stage_version=`echo $version_dir | sed 's/boost_//' | sed 's/_/./g'`
431
169
			        	stage_version_shorten=`expr $stage_version : '\([[0-9]]*\.[[0-9]]*\)'`
432
170
					V_CHECK=`expr $stage_version_shorten \>\= $_version`
433
171
                    if test "$V_CHECK" = "1" -a "$ac_boost_lib_path" = "" ; then
434
172
						AC_MSG_NOTICE(We will use a staged boost library from $BOOST_ROOT)
435
173
						BOOST_CPPFLAGS="-I$BOOST_ROOT"
436
174
						BOOST_LDFLAGS="-L$BOOST_ROOT/stage/lib"
437
175
					fi
438
176
				fi
439
177
	    		fi
440
178
		fi
441
179
442
180
		CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
443
181
		export CPPFLAGS
444
182
		LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
445
183
		export LDFLAGS
446
184
447
185
		AC_LANG_PUSH(C++)
448
186
	     	AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
449
187
		@%:@include <boost/version.hpp>
450
188
		]], [[
451
189
		#if BOOST_VERSION >= $WANT_BOOST_VERSION
452
190
		// Everything is okay
453
191
		#else
454
192
		#  error Boost version is too old
455
193
		#endif
456
194
		]])],[
457
195
        	AC_MSG_RESULT(yes)
458
196
		succeeded=yes
459
197
		found_system=yes
460
198
       		],[
461
199
	       	])
462
200
		AC_LANG_POP([C++])
463
201
	fi
464
202
465
203
	if test "$succeeded" != "yes" ; then
466
204
		if test "$_version" = "0" ; then
467
205
			AC_MSG_ERROR([[We could not detect the boost libraries (version $boost_lib_version_req_shorten or higher). If you have a staged boost library (still not installed) please specify \$BOOST_ROOT in your environment and do not give a PATH to --with-boost option.  If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation.]])
468
206
		else
469
207
			AC_MSG_NOTICE([Your boost libraries seem too old (version $_version).])
470
208
		fi
471
209
	else
472
210
		AC_SUBST(BOOST_CPPFLAGS)
473
211
		AC_SUBST(BOOST_LDFLAGS)
474
212
		AC_DEFINE(HAVE_BOOST,,[define if the Boost library is available])
475
213
	fi
476
214
477
215
        CPPFLAGS="$CPPFLAGS_SAVED"
478
216
       	LDFLAGS="$LDFLAGS_SAVED"
479
217
fi
480
218
481
219
])
482
0
220
483
=== added file 'trunk/Config/ax_boost_filesystem.m4'
484
--- trunk/Config/ax_boost_filesystem.m4	1970-01-01 00:00:00 +0000
485
+++ trunk/Config/ax_boost_filesystem.m4	2013-05-08 08:43:26 +0000
486
@@ -0,0 +1,112 @@
487
1
# ===========================================================================
488
2
#       http://www.nongnu.org/autoconf-archive/ax_boost_filesystem.html
489
3
# ===========================================================================
490
4
#
491
5
# SYNOPSIS
492
6
#
493
7
#   AX_BOOST_FILESYSTEM
494
8
#
495
9
# DESCRIPTION
496
10
#
497
11
#   Test for Filesystem library from the Boost C++ libraries. The macro
498
12
#   requires a preceding call to AX_BOOST_BASE. Further documentation is
499
13
#   available at <http://randspringer.de/boost/index.html>.
500
14
#
501
15
#   This macro calls:
502
16
#
503
17
#     AC_SUBST(BOOST_FILESYSTEM_LIB)
504
18
#
505
19
#   And sets:
506
20
#
507
21
#     HAVE_BOOST_FILESYSTEM
508
22
#
509
23
# LICENSE
510
24
#
511
25
#   Copyright (c) 2009 Thomas Porschberg <thomas@randspringer.de>
512
26
#   Copyright (c) 2009 Michael Tindal
513
27
#   Copyright (c) 2009 Roman Rybalko <libtorrent@romanr.info>
514
28
#
515
29
#   Copying and distribution of this file, with or without modification, are
516
30
#   permitted in any medium without royalty provided the copyright notice
517
31
#   and this notice are preserved.
518
32
519
33
AC_DEFUN([AX_BOOST_FILESYSTEM],
520
34
[
521
35
	AC_ARG_WITH([boost-filesystem],
522
36
	AS_HELP_STRING([--with-boost-filesystem@<:@=special-lib@:>@],
523
37
                   [use the Filesystem library from boost - it is possible to specify a certain library for the linker
524
38
                        e.g. --with-boost-filesystem=boost_filesystem-gcc-mt ]),
525
39
        [
526
40
        if test "$withval" = "no"; then
527
41
			want_boost="no"
528
42
        elif test "$withval" = "yes"; then
529
43
            want_boost="yes"
530
44
            ax_boost_user_filesystem_lib=""
531
45
        else
532
46
		    want_boost="yes"
533
47
        	ax_boost_user_filesystem_lib="$withval"
534
48
		fi
535
49
        ],
536
50
        [want_boost="yes"]
537
51
	)
538
52
539
53
	if test "x$want_boost" = "xyes"; then
540
54
        AC_REQUIRE([AC_PROG_CC])
541
55
		CPPFLAGS_SAVED="$CPPFLAGS"
542
56
		CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
543
57
		#export CPPFLAGS
544
58
545
59
		LDFLAGS_SAVED="$LDFLAGS"
546
60
		LDFLAGS="$LDFLAGS $BOOST_LDFLAGS"
547
61
		#export LDFLAGS
548
62
549
63
		LIBS_SAVED=$LIBS
550
64
		LIBS="$LIBS $BOOST_SYSTEM_LIB"
551
65
		#export LIBS
552
66
553
67
        AC_CACHE_CHECK(whether the Boost::Filesystem library is available,
554
68
					   ax_cv_boost_filesystem,
555
69
        [AC_LANG_PUSH([C++])
556
70
         AC_COMPILE_IFELSE(AC_LANG_PROGRAM([[@%:@include <boost/filesystem/path.hpp>]],
557
71
                                   [[using namespace boost::filesystem;
558
72
                                   path my_path( "foo/bar/data.txt" );
559
73
                                   return 0;]]),
560
74
            				       ax_cv_boost_filesystem=yes, ax_cv_boost_filesystem=no)
561
75
         AC_LANG_POP([C++])
562
76
		])
563
77
		if test "x$ax_cv_boost_filesystem" = "xyes"; then
564
78
			AC_DEFINE(HAVE_BOOST_FILESYSTEM,,[define if the Boost::Filesystem library is available])
565
79
            BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/@<:@^\/@:>@*//'`
566
80
            if test "x$ax_boost_user_filesystem_lib" = "x"; then
567
81
                for libextension in `ls $BOOSTLIBDIR/libboost_filesystem*.{so,dylib,a}* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^lib\(boost_filesystem.*\)\.so.*$;\1;' -e 's;^lib\(boost_filesystem.*\)\.a*$;\1;' -e 's;^lib\(boost_filesystem.*\)\.dylib$;\1;'` ; do
568
82
                     ax_lib=${libextension}
569
83
				    AC_CHECK_LIB($ax_lib, __cxa_atexit,
570
84
                                 [BOOST_FILESYSTEM_LIB="-l$ax_lib"; AC_SUBST(BOOST_FILESYSTEM_LIB) link_filesystem="yes"; break],
571
85
                                 [link_filesystem="no"])
572
86
  				done
573
87
                if test "x$link_program_options" != "xyes"; then
574
88
                for libextension in `ls $BOOSTLIBDIR/boost_filesystem*.{dll,a}* 2>/dev/null | sed 's,.*/,,' | sed -e 's;^\(boost_filesystem.*\)\.dll.*$;\1;' -e 's;^\(boost_filesystem.*\)\.a*$;\1;'` ; do
575
89
                     ax_lib=${libextension}
576
90
				    AC_CHECK_LIB($ax_lib, __cxa_atexit,
577
91
                                 [BOOST_FILESYSTEM_LIB="-l$ax_lib"; AC_SUBST(BOOST_FILESYSTEM_LIB) link_filesystem="yes"; break],
578
92
                                 [link_filesystem="no"])
579
93
  				done
580
94
	            fi
581
95
            else
582
96
               for ax_lib in $ax_boost_user_filesystem_lib boost_filesystem-$ax_boost_user_filesystem_lib; do
583
97
				      AC_CHECK_LIB($ax_lib, __cxa_atexit,
584
98
                                   [BOOST_FILESYSTEM_LIB="-l$ax_lib"; AC_SUBST(BOOST_FILESYSTEM_LIB) link_filesystem="yes"; break],
585
99
                                   [link_filesystem="no"])
586
100
                  done
587
101
588
102
            fi
589
103
			if test "x$link_filesystem" != "xyes"; then
590
104
				AC_MSG_ERROR(Could not link against $ax_lib !)
591
105
			fi
592
106
		fi
593
107
594
108
		CPPFLAGS="$CPPFLAGS_SAVED"
595
109
    		LDFLAGS="$LDFLAGS_SAVED"
596
110
		LIBS="$LIBS_SAVED"
597
111
	fi
598
112
])
599
0
113
600
=== added file 'trunk/Config/ax_boost_python.m4'
601
--- trunk/Config/ax_boost_python.m4	1970-01-01 00:00:00 +0000
602
+++ trunk/Config/ax_boost_python.m4	2013-05-08 08:43:26 +0000
603
@@ -0,0 +1,91 @@
604
1
# ===========================================================================
605
2
#            http://autoconf-archive.cryp.to/ax_boost_python.html
606
3
# ===========================================================================
607
4
#
608
5
# SYNOPSIS
609
6
#
610
7
#   AX_BOOST_PYTHON
611
8
#
612
9
# DESCRIPTION
613
10
#
614
11
#   This macro checks to see if the Boost.Python library is installed. It
615
12
#   also attempts to guess the currect library name using several attempts.
616
13
#   It tries to build the library name using a user supplied name or suffix
617
14
#   and then just the raw library.
618
15
#
619
16
#   If the library is found, HAVE_BOOST_PYTHON is defined and
620
17
#   BOOST_PYTHON_LIB is set to the name of the library.
621
18
#
622
19
#   This macro calls AC_SUBST(BOOST_PYTHON_LIB).
623
20
#
624
21
#   In order to ensure that the Python headers are specified on the include
625
22
#   path, this macro requires AX_PYTHON to be called.
626
23
#
627
24
# LAST MODIFICATION
628
25
#
629
26
#   2008-04-12
630
27
#
631
28
# COPYLEFT
632
29
#
633
30
#   Copyright (c) 2008 Michael Tindal
634
31
#
635
32
#   This program is free software; you can redistribute it and/or modify it
636
33
#   under the terms of the GNU General Public License as published by the
637
34
#   Free Software Foundation; either version 2 of the License, or (at your
638
35
#   option) any later version.
639
36
#
640
37
#   This program is distributed in the hope that it will be useful, but
641
38
#   WITHOUT ANY WARRANTY; without even the implied warranty of
642
39
#   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
643
40
#   Public License for more details.
644
41
#
645
42
#   You should have received a copy of the GNU General Public License along
646
43
#   with this program. If not, see <http://www.gnu.org/licenses/>.
647
44
#
648
45
#   As a special exception, the respective Autoconf Macro's copyright owner
649
46
#   gives unlimited permission to copy, distribute and modify the configure
650
47
#   scripts that are the output of Autoconf when processing the Macro. You
651
48
#   need not follow the terms of the GNU General Public License when using
652
49
#   or distributing such scripts, even though portions of the text of the
653
50
#   Macro appear in them. The GNU General Public License (GPL) does govern
654
51
#   all other use of the material that constitutes the Autoconf Macro.
655
52
#
656
53
#   This special exception to the GPL applies to versions of the Autoconf
657
54
#   Macro released by the Autoconf Macro Archive. When you make and
658
55
#   distribute a modified version of the Autoconf Macro, you may extend this
659
56
#   special exception to the GPL to apply to your modified version as well.
660
57
661
58
AC_DEFUN([AX_BOOST_PYTHON],
662
59
[AC_CACHE_CHECK(whether the Boost::Python library is available,
663
60
ac_cv_boost_python,
664
61
[AC_LANG_SAVE
665
62
 AC_LANG_CPLUSPLUS
666
63
 CPPFLAGS_SAVE=$CPPFLAGS
667
64
 CPPFLAGS="$BOOST_CPPFLAGS $PYTHON_CPPFLAGS $CPPFLAGS"
668
65
 if test x$PYTHON_INCLUDE_DIR != x; then
669
66
   CPPFLAGS=-I$PYTHON_INCLUDE_DIR $CPPFLAGS
670
67
 fi
671
68
 AC_COMPILE_IFELSE(AC_LANG_PROGRAM([[
672
69
 #include <boost/python/module.hpp>
673
70
 using namespace boost::python;
674
71
 BOOST_PYTHON_MODULE(test) { throw "Boost::Python test."; }]],
675
72
 			   [[return 0;]]),
676
73
  			   ac_cv_boost_python=yes, ac_cv_boost_python=no)
677
74
 AC_LANG_RESTORE
678
75
 CPPFLAGS=$CPPFLAGS_SAVE
679
76
])
680
77
if test "$ac_cv_boost_python" = "yes"; then
681
78
  AC_DEFINE(HAVE_BOOST_PYTHON,,[define if the Boost::Python library is available])
682
79
  ax_python_lib=boost_python
683
80
  AC_ARG_WITH([boost-python],AS_HELP_STRING([--with-boost-python],[specify the boost python library or suffix to use]),
684
81
  [if test "x$with_boost_python" != "xno"; then
685
82
     ax_python_lib=$with_boost_python
686
83
     ax_boost_python_lib=boost_python-$with_boost_python
687
84
   fi])
688
85
  LDFLAGS="$BOOST_LDFLAGS $LDFLAGS"
689
86
  for ax_lib in $ax_python_lib $ax_boost_python_lib boost_python boost_python-mt; do
690
87
    AC_CHECK_LIB($ax_lib, __cxa_atexit, [BOOST_PYTHON_LIB=-l$ax_lib break])
691
88
  done
692
89
  AC_SUBST(BOOST_PYTHON_LIB)
693
90
fi
694
91
])dnl
695
0
92
696
=== added file 'trunk/Config/cppunit.m4'
697
--- trunk/Config/cppunit.m4	1970-01-01 00:00:00 +0000
698
+++ trunk/Config/cppunit.m4	2013-05-08 08:43:26 +0000
699
@@ -0,0 +1,80 @@
700
1
dnl
701
2
dnl AM_PATH_CPPUNIT([MINIMUM-VERSION, [ACTION-IF-FOUND [, ACTION-IF-NOT-FOUND]]])
702
3
dnl
703
4
AC_DEFUN([AM_PATH_CPPUNIT],
704
5
[
705
6
706
7
AC_ARG_WITH(cppunit-prefix,[  --with-cppunit-prefix=PFX   Prefix where CppUnit is installed (optional)],
707
8
            cppunit_config_prefix="$withval", cppunit_config_prefix="")
708
9
AC_ARG_WITH(cppunit-exec-prefix,[  --with-cppunit-exec-prefix=PFX  Exec prefix where CppUnit is installed (optional)],
709
10
            cppunit_config_exec_prefix="$withval", cppunit_config_exec_prefix="")
710
11
711
12
  if test x$cppunit_config_exec_prefix != x ; then
712
13
     cppunit_config_args="$cppunit_config_args --exec-prefix=$cppunit_config_exec_prefix"
713
14
     if test x${CPPUNIT_CONFIG+set} != xset ; then
714
15
        CPPUNIT_CONFIG=$cppunit_config_exec_prefix/bin/cppunit-config
715
16
     fi
716
17
  fi
717
18
  if test x$cppunit_config_prefix != x ; then
718
19
     cppunit_config_args="$cppunit_config_args --prefix=$cppunit_config_prefix"
719
20
     if test x${CPPUNIT_CONFIG+set} != xset ; then
720
21
        CPPUNIT_CONFIG=$cppunit_config_prefix/bin/cppunit-config
721
22
     fi
722
23
  fi
723
24
724
25
  AC_PATH_PROG(CPPUNIT_CONFIG, cppunit-config, no)
725
26
  cppunit_version_min=$1
726
27
727
28
  AC_MSG_CHECKING(for Cppunit - version >= $cppunit_version_min)
728
29
  no_cppunit=""
729
30
  if test "$CPPUNIT_CONFIG" = "no" ; then
730
31
    no_cppunit=yes
731
32
  else
732
33
    CPPUNIT_CFLAGS=`$CPPUNIT_CONFIG --cflags`
733
34
    CPPUNIT_LIBS=`$CPPUNIT_CONFIG --libs`
734
35
    cppunit_version=`$CPPUNIT_CONFIG --version`
735
36
736
37
    cppunit_major_version=`echo $cppunit_version | \
737
38
           sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\1/'`
738
39
    cppunit_minor_version=`echo $cppunit_version | \
739
40
           sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\2/'`
740
41
    cppunit_micro_version=`echo $cppunit_version | \
741
42
           sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\3/'`
742
43
743
44
    cppunit_major_min=`echo $cppunit_version_min | \
744
45
           sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\1/'`
745
46
    cppunit_minor_min=`echo $cppunit_version_min | \
746
47
           sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\2/'`
747
48
    cppunit_micro_min=`echo $cppunit_version_min | \
748
49
           sed 's/\([[0-9]]*\).\([[0-9]]*\).\([[0-9]]*\)/\3/'`
749
50
750
51
    cppunit_version_proper=`expr \
751
52
        $cppunit_major_version \> $cppunit_major_min \| \
752
53
        $cppunit_major_version \= $cppunit_major_min \& \
753
54
        $cppunit_minor_version \> $cppunit_minor_min \| \
754
55
        $cppunit_major_version \= $cppunit_major_min \& \
755
56
        $cppunit_minor_version \= $cppunit_minor_min \& \
756
57
        $cppunit_micro_version \>= $cppunit_micro_min `
757
58
758
59
    if test "$cppunit_version_proper" = "1" ; then
759
60
      AC_MSG_RESULT([$cppunit_major_version.$cppunit_minor_version.$cppunit_micro_version])
760
61
    else
761
62
      AC_MSG_RESULT(no)
762
63
      no_cppunit=yes
763
64
    fi
764
65
  fi
765
66
766
67
  if test "x$no_cppunit" = x ; then
767
68
     ifelse([$2], , :, [$2])     
768
69
  else
769
70
     CPPUNIT_CFLAGS=""
770
71
     CPPUNIT_LIBS=""
771
72
     ifelse([$3], , :, [$3])
772
73
  fi
773
74
774
75
  AC_SUBST(CPPUNIT_CFLAGS)
775
76
  AC_SUBST(CPPUNIT_LIBS)
776
77
])
777
78
778
79
779
80
780
0
81
781
=== added file 'trunk/Config/pkg.m4'
782
--- trunk/Config/pkg.m4	1970-01-01 00:00:00 +0000
783
+++ trunk/Config/pkg.m4	2013-05-08 08:43:26 +0000
784
@@ -0,0 +1,58 @@
785
1
786
2
dnl PKG_CHECK_MODULES(GSTUFF, gtk+-2.0 >= 1.3 glib = 1.3.4, action-if, action-not)
787
3
dnl defines GSTUFF_LIBS, GSTUFF_CFLAGS, see pkg-config man page
788
4
dnl also defines GSTUFF_PKG_ERRORS on error
789
5
790
6
AC_DEFUN([PKG_CHECK_MODULES], [
791
7
  succeeded=no
792
8
793
9
  if test -z "$PKG_CONFIG"; then
794
10
    AC_PATH_PROG(PKG_CONFIG, pkg-config, no)
795
11
  fi
796
12
797
13
  if test "$PKG_CONFIG" = "no" ; then
798
14
     echo "*** The pkg-config script could not be found. Make sure it is"
799
15
     echo "*** in your path, or set the PKG_CONFIG environment variable"
800
16
     echo "*** to the full path to pkg-config."
801
17
     echo "*** Or see http://www.freedesktop.org/software/pkgconfig to get pkg-config."
802
18
  else
803
19
     PKG_CONFIG_MIN_VERSION=0.6.0
804
20
     if $PKG_CONFIG --atleast-pkgconfig-version $PKG_CONFIG_MIN_VERSION; then
805
21
        AC_MSG_CHECKING(for $2)
806
22
807
23
        if $PKG_CONFIG --exists "$2" ; then
808
24
            AC_MSG_RESULT(yes)
809
25
            succeeded=yes
810
26
811
27
            AC_MSG_CHECKING($1_CFLAGS)
812
28
            $1_CFLAGS=`$PKG_CONFIG --cflags "$2"`
813
29
            AC_MSG_RESULT($$1_CFLAGS)
814
30
815
31
            AC_MSG_CHECKING($1_LIBS)
816
32
            $1_LIBS=`$PKG_CONFIG --libs "$2"`
817
33
            AC_MSG_RESULT($$1_LIBS)
818
34
        else
819
35
            $1_CFLAGS=""
820
36
            $1_LIBS=""
821
37
            ## If we have a custom action on failure, don't print errors, but 
822
38
            ## do set a variable so people can do so.
823
39
            $1_PKG_ERRORS=`$PKG_CONFIG --errors-to-stdout --print-errors "$2"`
824
40
            ifelse([$4], ,echo $$1_PKG_ERRORS,)
825
41
        fi
826
42
827
43
        AC_SUBST($1_CFLAGS)
828
44
        AC_SUBST($1_LIBS)
829
45
     else
830
46
        echo "*** Your version of pkg-config is too old. You need version $PKG_CONFIG_MIN_VERSION or newer."
831
47
        echo "*** See http://www.freedesktop.org/software/pkgconfig"
832
48
     fi
833
49
  fi
834
50
835
51
  if test $succeeded = yes; then
836
52
     ifelse([$3], , :, [$3])
837
53
  else
838
54
     ifelse([$4], , AC_MSG_ERROR([Library requirements ($2) not met; consider adjusting the PKG_CONFIG_PATH environment variable if your libraries are in a nonstandard prefix so pkg-config can find them.]), [$4])
839
55
  fi
840
56
])
841
57
842
58
843
0
59
844
=== added file 'trunk/Config/python.m4'
845
--- trunk/Config/python.m4	1970-01-01 00:00:00 +0000
846
+++ trunk/Config/python.m4	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,193 @@
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1
## ------------------------                                 -*- Autoconf -*-
849
2
## Python file handling
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3
## From Andrew Dalke
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4
## Updated by James Henstridge
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5
## ------------------------
853
6
# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2008, 2009
854
7
# Free Software Foundation, Inc.
855
8
#
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9
# This file is free software; the Free Software Foundation
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10
# gives unlimited permission to copy and/or distribute it,
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11
# with or without modifications, as long as this notice is preserved.
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12
860
13
# AM_PATH_PYTHON([MINIMUM-VERSION], [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
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14
# ---------------------------------------------------------------------------
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15
# Adds support for distributing Python modules and packages.  To
863
16
# install modules, copy them to $(pythondir), using the python_PYTHON
864
17
# automake variable.  To install a package with the same name as the
865
18
# automake package, install to $(pkgpythondir), or use the
866
19
# pkgpython_PYTHON automake variable.
867
20
#
868
21
# The variables $(pyexecdir) and $(pkgpyexecdir) are provided as
869
22
# locations to install python extension modules (shared libraries).
870
23
# Another macro is required to find the appropriate flags to compile
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24
# extension modules.
872
25
#
873
26
# If your package is configured with a different prefix to python,
874
27
# users will have to add the install directory to the PYTHONPATH
875
28
# environment variable, or create a .pth file (see the python
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29
# documentation for details).
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30
#
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31
# If the MINIMUM-VERSION argument is passed, AM_PATH_PYTHON will
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32
# cause an error if the version of python installed on the system
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33
# doesn't meet the requirement.  MINIMUM-VERSION should consist of
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34
# numbers and dots only.
882
35
AC_DEFUN([AM_PATH_PYTHON],
883
36
 [
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37
  dnl Find a Python interpreter.  Python versions prior to 2.0 are not
885
38
  dnl supported. (2.0 was released on October 16, 2000).
886
39
  m4_define_default([_AM_PYTHON_INTERPRETER_LIST],
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40
                    [python python2 python3 python3.0 python2.6 python2.5 python2.4 python2.3 python2.2 dnl
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41
python2.1 python2.0])
889
42
890
43
  m4_if([$1],[],[
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44
    dnl No version check is needed.
892
45
    # Find any Python interpreter.
893
46
    if test -z "$PYTHON"; then
894
47
      AC_PATH_PROGS([PYTHON], _AM_PYTHON_INTERPRETER_LIST, :)
895
48
    fi
896
49
    am_display_PYTHON=python
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50
  ], [
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51
    dnl A version check is needed.
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52
    if test -n "$PYTHON"; then
900
53
      # If the user set $PYTHON, use it and don't search something else.
901
54
      AC_MSG_CHECKING([whether $PYTHON version >= $1])
902
55
      AM_PYTHON_CHECK_VERSION([$PYTHON], [$1],
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56
			      [AC_MSG_RESULT(yes)],
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57
			      [AC_MSG_ERROR(too old)])
905
58
      am_display_PYTHON=$PYTHON
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59
    else
907
60
      # Otherwise, try each interpreter until we find one that satisfies
908
61
      # VERSION.
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62
      AC_CACHE_CHECK([for a Python interpreter with version >= $1],
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63
	[am_cv_pathless_PYTHON],[
911
64
	for am_cv_pathless_PYTHON in _AM_PYTHON_INTERPRETER_LIST none; do
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65
	  test "$am_cv_pathless_PYTHON" = none && break
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66
	  AM_PYTHON_CHECK_VERSION([$am_cv_pathless_PYTHON], [$1], [break])
914
67
	done])
915
68
      # Set $PYTHON to the absolute path of $am_cv_pathless_PYTHON.
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69
      if test "$am_cv_pathless_PYTHON" = none; then
917
70
	PYTHON=:
918
71
      else
919
72
        AC_PATH_PROG([PYTHON], [$am_cv_pathless_PYTHON])
920
73
      fi
921
74
      am_display_PYTHON=$am_cv_pathless_PYTHON
922
75
    fi
923
76
  ])
924
77
925
78
  if test "$PYTHON" = :; then
926
79
  dnl Run any user-specified action, or abort.
927
80
    m4_default([$3], [AC_MSG_ERROR([no suitable Python interpreter found])])
928
81
  else
929
82
930
83
  dnl Query Python for its version number.  Getting [:3] seems to be
931
84
  dnl the best way to do this; it's what "site.py" does in the standard
932
85
  dnl library.
933
86
934
87
  AC_CACHE_CHECK([for $am_display_PYTHON version], [am_cv_python_version],
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88
    [am_cv_python_version=`$PYTHON -c "import sys; sys.stdout.write(sys.version[[:3]])"`])
936
89
  AC_SUBST([PYTHON_VERSION], [$am_cv_python_version])
937
90
938
91
  dnl Use the values of $prefix and $exec_prefix for the corresponding
939
92
  dnl values of PYTHON_PREFIX and PYTHON_EXEC_PREFIX.  These are made
940
93
  dnl distinct variables so they can be overridden if need be.  However,
941
94
  dnl general consensus is that you shouldn't need this ability.
942
95
943
96
  AC_SUBST([PYTHON_PREFIX], ['${prefix}'])
944
97
  AC_SUBST([PYTHON_EXEC_PREFIX], ['${exec_prefix}'])
945
98
946
99
  dnl At times (like when building shared libraries) you may want
947
100
  dnl to know which OS platform Python thinks this is.
948
101
949
102
  AC_CACHE_CHECK([for $am_display_PYTHON platform], [am_cv_python_platform],
950
103
    [am_cv_python_platform=`$PYTHON -c "import sys; sys.stdout.write(sys.platform)"`])
951
104
  AC_SUBST([PYTHON_PLATFORM], [$am_cv_python_platform])
952
105
953
106
954
107
  dnl Set up 4 directories:
955
108
956
109
  dnl pythondir -- where to install python scripts.  This is the
957
110
  dnl   site-packages directory, not the python standard library
958
111
  dnl   directory like in previous automake betas.  This behavior
959
112
  dnl   is more consistent with lispdir.m4 for example.
960
113
  dnl Query distutils for this directory.  distutils does not exist in
961
114
  dnl Python 1.5, so we fall back to the hardcoded directory if it
962
115
  dnl doesn't work.
963
116
  AC_CACHE_CHECK([for $am_display_PYTHON script directory],
964
117
    [am_cv_python_pythondir],
965
118
    [if test "x$prefix" = xNONE
966
119
     then
967
120
       am_py_prefix=$ac_default_prefix
968
121
     else
969
122
       am_py_prefix=$prefix
970
123
     fi
971
124
     am_cv_python_pythondir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(0,0,prefix='$am_py_prefix'))" 2>/dev/null ||
972
125
     echo "$PYTHON_PREFIX/lib/python$PYTHON_VERSION/site-packages"`
973
126
     case $am_cv_python_pythondir in
974
127
     $am_py_prefix*)
975
128
       am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'`
976
129
       am_cv_python_pythondir=`echo "$am_cv_python_pythondir" | sed "s,^$am__strip_prefix,$PYTHON_PREFIX,"`
977
130
       ;;
978
131
     esac
979
132
    ])
980
133
  AC_SUBST([pythondir], [$am_cv_python_pythondir])
981
134
982
135
  dnl pkgpythondir -- $PACKAGE directory under pythondir.  Was
983
136
  dnl   PYTHON_SITE_PACKAGE in previous betas, but this naming is
984
137
  dnl   more consistent with the rest of automake.
985
138
986
139
  AC_SUBST([pkgpythondir], [\${pythondir}/$PACKAGE])
987
140
988
141
  dnl pyexecdir -- directory for installing python extension modules
989
142
  dnl   (shared libraries)
990
143
  dnl Query distutils for this directory.  distutils does not exist in
991
144
  dnl Python 1.5, so we fall back to the hardcoded directory if it
992
145
  dnl doesn't work.
993
146
  AC_CACHE_CHECK([for $am_display_PYTHON extension module directory],
994
147
    [am_cv_python_pyexecdir],
995
148
    [if test "x$exec_prefix" = xNONE
996
149
     then
997
150
       am_py_exec_prefix=$am_py_prefix
998
151
     else
999
152
       am_py_exec_prefix=$exec_prefix
1000
153
     fi
1001
154
     am_cv_python_pyexecdir=`$PYTHON -c "import sys; from distutils import sysconfig; sys.stdout.write(sysconfig.get_python_lib(1,0,prefix='$am_py_exec_prefix'))" 2>/dev/null ||
1002
155
     echo "$PYTHON_EXEC_PREFIX/lib/python$PYTHON_VERSION/site-packages"`
1003
156
     case $am_cv_python_pyexecdir in
1004
157
     $am_py_exec_prefix*)
1005
158
       am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'`
1006
159
       am_cv_python_pyexecdir=`echo "$am_cv_python_pyexecdir" | sed "s,^$am__strip_prefix,$PYTHON_EXEC_PREFIX,"`
1007
160
       ;;
1008
161
     esac
1009
162
    ])
1010
163
  AC_SUBST([pyexecdir], [$am_cv_python_pyexecdir])
1011
164
1012
165
  dnl pkgpyexecdir -- $(pyexecdir)/$(PACKAGE)
1013
166
1014
167
  AC_SUBST([pkgpyexecdir], [\${pyexecdir}/$PACKAGE])
1015
168
1016
169
  dnl Run any user-specified action.
1017
170
  $2
1018
171
  fi
1019
172
1020
173
])
1021
174
1022
175
1023
176
# AM_PYTHON_CHECK_VERSION(PROG, VERSION, [ACTION-IF-TRUE], [ACTION-IF-FALSE])
1024
177
# ---------------------------------------------------------------------------
1025
178
# Run ACTION-IF-TRUE if the Python interpreter PROG has version >= VERSION.
1026
179
# Run ACTION-IF-FALSE otherwise.
1027
180
# This test uses sys.hexversion instead of the string equivalent (first
1028
181
# word of sys.version), in order to cope with versions such as 2.2c1.
1029
182
# This supports Python 2.0 or higher. (2.0 was released on October 16, 2000).
1030
183
AC_DEFUN([AM_PYTHON_CHECK_VERSION],
1031
184
 [prog="import sys
1032
185
# split strings by '.' and convert to numeric.  Append some zeros
1033
186
# because we need at least 4 digits for the hex conversion.
1034
187
# map returns an iterator in Python 3.0 and a list in 2.x
1035
188
minver = list(map(int, '$2'.split('.'))) + [[0, 0, 0]]
1036
189
minverhex = 0
1037
190
# xrange is not present in Python 3.0 and range returns an iterator
1038
191
for i in list(range(0, 4)): minverhex = (minverhex << 8) + minver[[i]]
1039
192
sys.exit(sys.hexversion < minverhex)"
1040
193
  AS_IF([AM_RUN_LOG([$1 -c "$prog"])], [$3], [$4])])
1041
0
194
1042
=== added file 'trunk/Config/rules.am'
1043
--- trunk/Config/rules.am	1970-01-01 00:00:00 +0000
1044
+++ trunk/Config/rules.am	2013-05-08 08:43:26 +0000
1045
@@ -0,0 +1,58 @@
1046
1
#############################################################
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2
##                                                         ##
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3
## Copyright (c) 2003-2011 by The University of Queensland ##
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4
## Earth Systems Science Computational Centre (ESSCC)      ##
1050
5
## http://www.uq.edu.au/esscc                              ##
1051
6
##                                                         ##
1052
7
## Primary Business: Brisbane, Queensland, Australia       ##
1053
8
## Licensed under the Open Software License version 3.0    ##
1054
9
## http://www.opensource.org/licenses/osl-3.0.php          ##
1055
10
##                                                         ##
1056
11
#############################################################
1057
12
1058
13
##
1059
14
#
1060
15
# Begin $(top_srcdir)/Config/rules.am
1061
16
#
1062
17
1063
18
if TAU_PROFILING
1064
19
  include $(TAU_MAKEFILE)
1065
20
  AM_MAKEFLAGS = -r CC="$(TAU_CC)" CXX="$(TAU_CXX)" CPPFLAGS="$(TAU_DEFS) $(TAU_INCLUDE) $(TAU_MPI_INCLUDE)"
1066
21
1067
22
  PDTPARSE = $(PDTDIR)/$(CONFIG_ARCH)/bin/cxxparse
1068
23
  TAUINSTR = $(TAU_PREFIX_INSTALL_DIR)/$(CONFIG_ARCH)/bin/tau_instrumentor
1069
24
1070
25
  EXTRA_LD_LIBS = $(TAU_LDFLAGS) $(TAU_MPI_LIBS) $(TAU_LIBS) -lpfm
1071
26
1072
27
#
1073
28
# Prevent intermediate instrumented files from automatically
1074
29
# being deleted.
1075
30
#
1076
31
.SECONDARY: .inst_cpp .pdb
1077
32
1078
33
#
1079
34
# Cancel implicit rules
1080
35
#
1081
36
%.o: %.cpp
1082
37
1083
38
%.o:%.inst_cpp
1084
39
	if $(CXXCOMPILE) -MT $@ -MD -MP -MF "$(DEPDIR)/$*.Tpo" -c -o $@ $<; \
1085
40
	then mv -f "$(DEPDIR)/$*.Tpo" "$(DEPDIR)/$*.Po"; else rm -f "$(DEPDIR)/$*.Tpo"; exit 1; fi
1086
41
1087
42
%.inst_cpp: %.pdb
1088
43
	$(TAUINSTR) $*.pdb $*.cpp -o $@
1089
44
1090
45
%.pdb: %.cpp
1091
46
	$(PDTPARSE) $< -I. $(CPPFLAGS) $(AM_CPPFLAGS)
1092
47
1093
48
else
1094
49
  AM_MAKEFLAGS =
1095
50
  EXTRA_LD_LIBS = 
1096
51
endif
1097
52
1098
53
CLEANFILES = *.inst_cpp *.pdb
1099
54
1100
55
#
1101
56
# End $(top_srcdir)/Config/rules.am
1102
57
#
1103
58
##
1104
0
59
1105
=== added directory 'trunk/Doc'
1106
=== added file 'trunk/Doc/FileFormat.pdf'
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1
Binary files trunk/Doc/FileFormat.pdf	1970-01-01 00:00:00 +0000 and trunk/Doc/FileFormat.pdf	2013-05-08 08:43:26 +0000 differ
60
Binary files trunk/Doc/FileFormat.pdf	1970-01-01 00:00:00 +0000 and trunk/Doc/FileFormat.pdf	2013-05-08 08:43:26 +0000 differ
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=== added file 'trunk/Doc/FileFormat.ps'
1109
--- trunk/Doc/FileFormat.ps	1970-01-01 00:00:00 +0000
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+++ trunk/Doc/FileFormat.ps	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,2861 @@
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%!PS-Adobe-2.0
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%%Creator: dvips(k) 5.92b Copyright 2002 Radical Eye Software
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%%Title: FileFormat.dvi
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5
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6
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%%+ CMR8 CMTT10 CMSS10 CMMI10
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%%DocumentPaperSizes: a4
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10
%%EndComments
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11
%DVIPSWebPage: (www.radicaleye.com)
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12
%DVIPSCommandLine: dvips FileFormat
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13
%DVIPSParameters: dpi=600, compressed
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14
%DVIPSSource:  TeX output 2004.11.08:1214
1126
15
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1127
16
%!
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array copy cvx N load 0 nn put/ctr 0 N[}B/sf 0 N/df{/sf 1 N/fntrx FMat N
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df-tail}B/dfs{div/sf X/fntrx[sf 0 0 sf neg 0 0]N df-tail}B/E{pop nn A
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0 Cx Cy Ch sub Cx Cw add Cy setcachedevice Cw Ch true[1 0 0 -1 -.1 Cx
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1150
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1154
43
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47
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1159
48
1 add set}{1 add clr}{adv 2 chg}{adv 2 chg nd}{pop nd}]A{bind pop}
1160
49
forall N/D{/cc X A type/stringtype ne{]}if nn/base get cc ctr put nn
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1162
51
}if put/ctr ctr 1 add N}B/I{cc 1 add D}B/bop{userdict/bop-hook known{
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52
bop-hook}if/SI save N @rigin 0 0 moveto/V matrix currentmatrix A 1 get A
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1166
55
userdict/start-hook known{start-hook}if pop/VResolution X/Resolution X
1167
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1000 div/DVImag X/IEn 256 array N 2 string 0 1 255{IEn S A 360 add 36 4
1168
57
index cvrs cvn put}for pop 65781.76 div/vsize X 65781.76 div/hsize X}N
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(LaserWriter 16/600)]{A length product length le{A length product exch 0
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61
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62
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1174
63
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1175
64
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1177
66
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67
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69
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1181
70
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1182
71
1183
72
%%EndProcSet
1184
73
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1185
74
% Thomas Esser, Dec 2002. public domain
1186
75
%
1187
76
% Encoding for:
1188
77
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82
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% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
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11 dict begin
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currentdict end
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cleartomark
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% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
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/FontInfo 7 dict dup begin
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/FamilyName (Computer Modern) readonly def
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/Weight (Bold) readonly def
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1900
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end readonly def
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0 1 255 {1 index exch /.notdef put} for
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dup 0 /.notdef put
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readonly def
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1930
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1931
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1932
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1933
822
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1934
823
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1935
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1936
825
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1937
826
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1938
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1939
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1940
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1941
830
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1942
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1943
832
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1944
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1945
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1946
835
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1947
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1948
837
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1949
838
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1950
839
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1951
840
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1952
841
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1953
842
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1954
843
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1955
844
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1956
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1957
846
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1958
847
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1959
848
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1960
849
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1961
850
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1962
851
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1963
852
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1964
853
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1965
854
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1966
855
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1967
856
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1968
857
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1969
858
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1970
859
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1971
860
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1972
861
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1973
862
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1974
863
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1975
864
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1976
865
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1977
866
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1978
867
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1979
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1980
869
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1981
870
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1982
871
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1983
872
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1984
873
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1985
874
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1986
875
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1987
876
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1988
877
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1989
878
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1990
879
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1991
880
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1992
881
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1993
882
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1994
883
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1995
884
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1996
885
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1997
886
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1998
887
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1999
888
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2000
889
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2001
890
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2002
891
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2003
892
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2004
893
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2005
894
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2006
895
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2007
896
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2008
897
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2009
898
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2010
899
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2011
900
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2012
901
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2013
902
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2014
903
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2015
904
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2016
905
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2017
906
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2018
907
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2019
908
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2020
909
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2021
910
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2022
911
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2023
912
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2024
913
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2025
914
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2026
915
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2027
916
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2028
917
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2029
918
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2030
919
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2031
920
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2032
921
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2033
922
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2034
923
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2035
924
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2036
925
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2037
926
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2038
927
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2039
928
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2040
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end readonly def
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0 1 255 {1 index exch /.notdef put} for
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dup 0 /.notdef put
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readonly def
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cleartomark
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%%EndFont 
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%%BeginFont: CMTI10
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%!PS-AdobeFont-1.1: CMTI10 1.00B
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%%CreationDate: 1992 Feb 19 19:56:16
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% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
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11 dict begin
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/FontInfo 7 dict dup begin
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/version (1.00B) readonly def
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/Notice (Copyright (C) 1997 American Mathematical Society. All Rights Reserved) readonly def
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/FullName (CMTI10) readonly def
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/FamilyName (Computer Modern) readonly def
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/Weight (Medium) readonly def
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/ItalicAngle -14.04 def
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/isFixedPitch false def
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end readonly def
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/FontName /CMTI10 def
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/PaintType 0 def
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/FontType 1 def
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/FontMatrix [0.001 0 0 0.001 0 0] readonly def
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/Encoding 256 array
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0 1 255 {1 index exch /.notdef put} for
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dup 0 /.notdef put
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readonly def
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/FontBBox{-163 -250 1146 969}readonly def
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/UniqueID 5000828 def
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currentdict end
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currentfile eexec
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%%EndFont 
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%%CreationDate: 1992 Feb 19 19:54:52
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% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
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11 dict begin
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/FullName (CMR10) readonly def
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/FamilyName (Computer Modern) readonly def
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/Weight (Medium) readonly def
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/isFixedPitch false def
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end readonly def
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/FontName /CMR10 def
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/FontMatrix [0.001 0 0 0.001 0 0] readonly def
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/Encoding 256 array
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0 1 255 {1 index exch /.notdef put} for
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dup 0 /.notdef put
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readonly def
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currentdict end
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1938
409A5D417DA6730A69E310FA6A4229FC7E4F620B0FC4C63C50E99E179EB51E4C
3050
1939
4BC45217722F1E8E40F1E1428E792EAFE05C5A50D38C52114DFCD24D54027CBF
3051
1940
2512DD116F0463DE4052A7AD53B641A27E81E481947884CE35661B49153FA19E
3052
1941
0A2A860C7B61558671303DE6AE06A80E4E450E17067676E6BBB42A9A24ACBC3E
3053
1942
B0CA7B7A3BFEA84FED39CCFB6D545BB2BCC49E5E16976407AB9D94556CD4F008
3054
1943
24EF579B6800B6DC3AAF840B3FC6822872368E3B4274DD06CA36AF8F6346C11B
3055
1944
43C772CC242F3B212C4BD7018D71A1A74C9A94ED0093A5FB6557F4E0751047AF
3056
1945
D72098ECA301B8AE68110F983796E581F106144951DF5B750432A230FDA3B575
3057
1946
5A38B5E7972AABC12306A01A99FCF8189D71B8DBF49550BAEA9CF1B97CBFC7CC
3058
1947
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3059
1948
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3060
1949
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3061
1950
B9E88A4024C3326AD2F34F47B54739B48825AD6699F7D117EA4C4AEC4440BF6D
3062
1951
AA0099DEFD326235965C63647921828BF269ECC87A2B1C8CAD6C78B6E561B007
3063
1952
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3064
1953
FEF3D8C63B2F8B99FE0F73BA44B3CF15A613471EA3C7A1CD783D3EB41F4ACEE5
3065
1954
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3066
1955
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3067
1956
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3068
1957
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3069
1958
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3070
1959
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3071
1960
1E965594E0364F0D4F1EC48004CEBDDAFB1F0EE0A8222358EAC0F62E6BFA3C9F
3072
1961
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3073
1962
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3074
1963
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3075
1964
2779390AFACBDC4FBA56804BF82120B02F3109D4088F3E3123018D1A92329EA8
3076
1965
C65D312E8E2B232822D6FC4A0D290482E9260ECA5BA52DA0E5BF9C1FDF0F5CC4
3077
1966
E32D947827F5B33620D8049D94ACEE4E1B49434B271D22B53AEE1DCCC9FA7ABD
3078
1967
AED2F04509C21E85600DCB71F15A6012F3BEBA9D5822E3172F75FBB248443231
3079
1968
05E93B2378F20710019695188C430E6213CBA49C02D1678752CBB97A140C81DB
3080
1969
516E544E04813437A0B89433BF269241C0DA67E5BEC040A958B14BB3D7821513
3081
1970
50B1FB6FDA447AB76E6E30888495190D55D169DA7DABDFDBB204B3CB8F686C9B
3082
1971
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3083
1972
9012CFD0840925D807EB0C84FAFA0C67871D1A84CC512CBC8FA3F311DE5F2197
3084
1973
C677D1D9EB11C1607C8F0CE4EC25AE26A57EF97E1E0BBC6B34D1F24F412C7101
3085
1974
2D5F0D1131E5B125D4BA2C0ABC5DFB5F6C116F48E9E6922F39CE77E224C48FBC
3086
1975
0AA43F0D960075B602B477832BB6DBF76B4EEE3056F3C4AC6E87A653EF8443B7
3087
1976
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3088
1977
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3089
1978
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3090
1979
2C941A1C4ED4885785B96F9471A4AFCF263004568F127F4AC8C07EF3377DE265
3091
1980
02817FB2E7A9BCA1F6164C53B763E1B34DA404F10AA5FF67D02C889C88C128A8
3092
1981
52A758D11EBE416FD284EE66712B4A6F4B7EA8705E0C876C7AEEC6F836B64365
3093
1982
BEA5B7A817F245BF6E52F39629BE5DD93B641B22597223BD913BF038C67CF4E8
3094
1983
A26F6158A53C31FF2D8E47E287217FD1FE098AA8B2CDF62C5EEB8265C7F2726F
3095
1984
863FB49AF23B5F2C9386735F0B27F19BC62D9532F680F1EF7DEB12E966618014
3096
1985
C0C3F6AD7B57B980E0EF3DABE5171FE3C86769E2B82CBFDE35CF404141F834E4
3097
1986
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3098
1987
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3099
1988
14B9E4FAF86E02BBDF8EBA05D4FFA3CCE53B11F6262CAEBC3D2A9DB7885A4B5F
3100
1989
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3101
1990
1DAE3BB569189B1B1AAB67D2E368D0590A1B2BD8832B63737493792E00E2D849
3102
1991
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3103
1992
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3104
1993
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3105
1994
3E0A81CE3FA71464EC90D731077E8A1102D1D0094BE3451718873A3BF973616E
3106
1995
152F69394D9D9E64E9EFC4412C01B047359638C5E1237A95F5BDAF862CAAD4F1
3107
1996
D1DC225CF4D3FFB0CA9460AFCF9C7249C31C7B04431B69EC0927AFFF0A25FB87
3108
1997
8C894210E5EB2A1A8DC4629FEAD9A1FCC2DB8ADFB9BA5735ABA437AF0CBE081A
3109
1998
7EB553FB024AE3136C503A759B882A6009EAEF58AA283A46B7AF49326A77EB5D
3110
1999
D7B83FDD76533009CC24D294A212DDF803C7561B8A0B4EC8FD87C4C80FBA466D
3111
2000
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3112
2001
FB6DC98CDFB4678BB3224D37B7CCD751AB263563CF4C0370A0A3449F961D714D
3113
2002
14A443FD7A21B8901A79810B803F98316DC6268203886988FD6C6649E989430E
3114
2003
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3115
2004
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3116
2005
C265DF5E73081E606FE3B64920A5FCE11D26F31E79672964C2D20213AEB5C8C4
3117
2006
04EA1AA70F597E8C3C3E8BF9EE9B54B72439D6C1CEF4DD4017622DA581B65AE4
3118
2007
9DE90BE8A4F0606D7D91F997D4F17A9B94BB0E40C7B09DA9C7AD65E3E1DE16C9
3119
2008
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3120
2009
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3121
2010
0C32A50E90B5624F2A3079150B3AF1A2C35E5A67BB3DE710DF17B15C168A2E9A
3122
2011
AE16F9BE3B8DDD622643AC7DA39E62F6CE520CEEB78F1C6FDDB127F5AEE9CBCC
3123
2012
35FFED0AA27E1F299767841BF4AF52A12E968EFF9BFCB0429E7F4C65CB3CBB2D
3124
2013
0833FC24E98FCE42B1372D97645673AFA8329257142D4D86322443AEDA45FAA3
3125
2014
EE219C91E60D2DD43C263308DC809D78E850C06A0E67D32A1BA0978E5389F15A
3126
2015
8AD49374549F1A1B7517D3132E5DBE3912B3F5238740C1151FCCCD00E5FB8E20
3127
2016
D79A04E85CD41644319B363A8221FD0EE314DFA3B60F3274D7627633FCE5B55B
3128
2017
DE72658825C439FF70D3E24C5E8BB458D89F841B1522258AAE5A241410E4C8B6
3129
2018
687608817B558640378E2F9058AF856B429E4978C69727837B551D1A21D81A0A
3130
2019
5D50C4DB81399A56841027A9D6CF7BE5A2BB3C3659772D285882AEAD601D4AF5
3131
2020
BE392A7FB21F2C3EACF2E4FA0D8F02A52F138BFDC93B6E0C41E5B081E0BD23F0
3132
2021
BDC102D5443EEEDF1F697487C399D5C0A0E1A3541CF14F48A347553BB3DAAA7A
3133
2022
E8E5DED825699DE2F3938065C0A954CDF57735C94A7A1A14B482899781D7B30E
3134
2023
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3135
2024
3A412EAB874B54993C3C7C87EFD4F119C88056FD1FBC37900C97FE389C214587
3136
2025
5D6D0E2F3EC1D137599AA39C1626E799F17381E2AFFA608B1F3F3C9D01DC075E
3137
2026
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3138
2027
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3139
2028
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3140
2029
1EC999CA224D40B5636AFB990156A43FF21FA0D83B4B308FA60073B1D9580FE1
3141
2030
760BC85C1573956215D61A2207C860DE9DD87D7D6C02A8354A3D2D8BA972B30F
3142
2031
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3143
2032
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3144
2033
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3145
2034
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3146
2035
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3147
2036
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3148
2037
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3149
2038
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3150
2039
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3151
2040
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3152
2041
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3153
2042
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3154
2043
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3155
2044
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3156
2045
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3157
2046
7E99D1CBDC6A724F20606AD1F8B430C3D7EE7AAAFE66C4CFE070E9DEFECA7E6B
3158
2047
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3159
2048
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3160
2049
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3161
2050
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3162
2051
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3163
2052
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3164
2053
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3165
2054
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3166
2055
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3167
2056
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3168
2057
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3169
2058
068E8CA30DB3AC987195E30702184E2A8456F81C563B3BAE5F553959A1BFDCEB
3170
2059
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3171
2060
4E3C746A45D0923D3017CA4546DE558A0B8895BFCF090B7AFD188D28B21F3A8A
3172
2061
DFE3EB2CF6F047FBC4D20C9E37C57BA24B5DDE4C7A4F62B933B78AD9944A5D09
3173
2062
B15A32D96FF77191B7FFE19E52A5D7BE2BFEE5816C19DB5FDDBE067C9CD72B11
3174
2063
B64C7CBE3B23ECA8C51C3A5288E5038D5E6F5658E0A9D355A41B29F51F484F3A
3175
2064
C90EEDF675A8C6DE90251AFFB83EF93D881DE99889345C6A81BBBD4E8279479A
3176
2065
FC1AF96D7CCFF08BD465E26CC7EEDB44F3A4BD93AE747A58E1599C424882A660
3177
2066
63F882B2D494446CBD53CD81C250204563750E46463EC7EAD13BD7CF59F025A7
3178
2067
4D9AB3D0AEF8E23A52B1D52C19A8BF8639E172CE67AE703F993C37BD137E6476
3179
2068
0D8013AA11CA9242442DA320997A23D39C265B28000AB942797E0F0C60AFD23C
3180
2069
0D459F71DDAF058BBB626BAA4ED593855A83E7656821C3660897704966BF6E02
3181
2070
B68D6940545541CA9BC59D8DDD9185DB5928993AF4381D79611C7F1735AAB46E
3182
2071
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3183
2072
0B95D5AA0AAC4E0DB1868ECAF6F020C8D3409FB47D7B0C96161C11486B57340F
3184
2073
DAAAF19D176F0D1E1A2CA66ECC0E1F2A8F19C17948C0D2BE06FDA4446D349E0C
3185
2074
C7DC336E5096F9891C767907A4AA5B7CCA07AAF79FE27520D0E3AADAC7CCBBC0
3186
2075
A2C635A50018032E5299C6B83E0474447DE5D72F964CCB2A3D8A6FCC2CDE6092
3187
2076
83A7EDD4110D32709CB4A6C9E12A69D9884F2FA3CFB28DC3D8ECCCEA0F0424C4
3188
2077
24B946358621764ECB66B2C568E289683D4BD298299F8C4170A198254A041E9B
3189
2078
5FFEF665A760CA67A001FC7469A25C0C177063D94267D704E93C98A33028CE6B
3190
2079
EB538C9C820F557C849F6C9140E79FA3E36DC003C2D856F1053F15B1B4BE7C01
3191
2080
092FE7CDC69DBD48D4CDC569F6C13F0AE2DB4F61BCF8E63BA39D0BCFA9AE8EBA
3192
2081
DF303759A980D5B8822FF02FB47AC513A9B67CD2FABF39938ED8DA319A5B9ECF
3193
2082
FC82CB15DD454AF54131AB4358682B8024087F02FF323FADD37A580C00492BF1
3194
2083
428E5F946FF84919D71CCCD90296501A02D7C137F799531B99167953F3C292CA
3195
2084
D4F94087CFE0461172F3E3D64E90929494C6DD06121005A5CD121F57E1C92DA8
3196
2085
0D6DB05EF38793D274F8C92316803E51E4C630B5B55DFC8C0C231CB89D88A873
3197
2086
54E871C9E2DCD6669270EECC235652290F96191B41F7763AC64DEE8E9DE07FA9
3198
2087
4BD9328474C2A58F5B629C9E127217DB7104756552A02546E26A322A1D102E94
3199
2088
3A7F806DB919E312284522550C2574B7A0AF8EE8E9061AEF549B88A081DAE891
3200
2089
96769E42CD4319CD8F04EF4A14DE067C73EEEAE2636F6AC5D08CDA3C57FBFD70
3201
2090
95516BADC40DE5B8784C126BC3513D0EB21EAB2DFDBB79016B5475404849F574
3202
2091
F469DEDB5B0ACB5CC6EC6CF94C2B5FF0B306B788805DDF3B9407DA0F5D3004E8
3203
2092
94A1AC0D9B9A4A1A5492D8CC80AE76D9541FA8C6E5CBF4F7F86416529CE0ED84
3204
2093
1E58E6AD93DDDAF25F2BCD1B968B75DE93225A5B6A86379C2B22BE62928C14E3
3205
2094
506BB493455E1DF755F77959D5F7F6A4CBEFA43C7A2154183C345B58167B3586
3206
2095
E214A92A9CC1C707623E7C2B7DE763903C500AE53590ED90C70C86419E7AA168
3207
2096
94D123112780A7E86BA448EFD168CB7FCA4F99A8D1442DC68520D304959C26A5
3208
2097
640EAC0F71EE4783C434201E476D3DDDEF80AFA92607F4334CB1155E5558146E
3209
2098
8E73A1AD6AD28EABDBBCD9E70CABB41A36BBF62B2A46D412B8912B11738DD72F
3210
2099
75E07745FBA6804EDFA631973545537453F2A505D58CD7DEDA87C987677E1A0E
3211
2100
039DA9CF25C27A6337233DFF6B89A69F5790B9C585C3E7D8A74694A7E64F93F6
3212
2101
16EF9038FECE5ECFC1DC742D2340F2406664CB91EA13B2EB361739F0C217AA58
3213
2102
EBEC01C34A6586FA8482CB8177948DCEB92F3DF2AD1F2454DDB534B8FEA6A8DC
3214
2103
ACA1603F757EECA835F20C5206D2AF40CBCA0BA5CE40A944E3589E7D1861AE0D
3215
2104
A31886A4AD11C12277117A3D9A87BFCA310C3209BBAC5EBF809E646F3D995783
3216
2105
A08F8E39F63CC183A6D9553DEA23F10679F5A656F3ACF0D8B286371ED20449F1
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% Copyright (C) 1997 American Mathematical Society. All Rights Reserved.
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2688
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3901
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2803
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userdict /end-hook known{end-hook}if
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0
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=== added file 'trunk/Doc/FileFormat.tex'
3975
--- trunk/Doc/FileFormat.tex	1970-01-01 00:00:00 +0000
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+++ trunk/Doc/FileFormat.tex	2013-05-08 08:43:26 +0000
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@@ -0,0 +1,144 @@
3978
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\documentclass{article}
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\begin{document}
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\title{Geometry Input File Format for ESyS-Particle - Version 2.0.}
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\author{Steffen Abe}
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\date{\today}
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\maketitle
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\section{Introduction}
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The input file described here contains only the description of the model geometry. The material properties of the particles (density \dots) and interactions (spring constant, breaking distance \dots) are described elsewhere, either in a separate properties file or in the script \textit{TBD}. In order to facilitate this, both particles and predefined connections/interactions have tags.   
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\subsubsection*{Rationale:}
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\begin{itemize}
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\item Makes it possible to change the properties
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independently from the geometries, for example in order to easily run a suite of simulation with identical geometries but varying material properties.
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\end{itemize}
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The input files are pure ASCII files formatted in the way described in the following sections. 
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\subsubsection*{Rationale:}
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\begin{itemize}
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\item ASCII is preferred over binary format for portability and debuggability reasons.
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\item Using some ``standard'' description language, i.e. XML seems 
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  \begin{itemize}
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  \item unnecessary as the files are machine generated and read, which reduces the need for flexibility and verbosity
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  \item a suboptimal solution with respect to file size, i.e. a million particle file would grow quite large if XML was used \footnote{It would be quite large anyway, somewhere around 40--50 byte per particle and 15--20 byte per connection, i.e. a file describing a model consisting of $10^6$ part in a fully connected regular 3D lattice would have a size around 100MB. So we may look at using compressed (libz, libbz2) files at some later stage.} 
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  \end{itemize}
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\end{itemize}
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\section{The File Format}
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The geometry file specifies the overall model geometry, the particle positions and geometries, the assignment of the particles to some particle groups and the initial connectivity between particles, i.e. the bonds. In case of spherical particles the per-particle geometry is reduced to just the particle radius. 
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\subsection{File Structure}
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The geometry file consist of a header and 3 content sections:
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\begin{enumerate}
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\item The ``model geometry'' section which contains the containing volume(s) of the model and definition of circular (periodic) boundary conditions
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\item The ``particles'' section
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\item The ``connections'' section 
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\end{enumerate}
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\subsection{Header}
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The header just contains an identifier for the file type and the version of the file. 
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\begin{verbatim}
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LSMGeometry 1.2
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\end{verbatim}
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where \textsf{LSMGeometry} is the identifier and \textsf{1.2} the current version number.
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\subsection{Model Geometry}
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The model geometry section contains a description of the volume(s) in which the model is contained, a definition which of the boundaries of this volume are periodic and the dimensionality of the model. In the current version the containing volume is just an axis aligned bounding box which is given by the coordinates of minimum and maximum corners. The boundaries are described by a boolean value (0,1) for each coordinate axis, where 1 stands for periodic, 0 for non-periodic. The distinction between 2D and 3D models is done between done in order to be able to calculate the correct volume of a particle from its radius, i.e. $\pi r^2$ vs. ${4 \over 3} \pi r^3$. For Version 1.1. files which have no dimensionality given, 2D is assumed.
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\begin{verbatim}
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BoundingBox min.x min.y min.z max.x max.y max.z
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PeriodicBoundaries x y z
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Dimensions [2D|3D]
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\end{verbatim}
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\subsection{Particles}
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The particle section of the geometry file contains beginning and end markers, a keyword for the particle type, i.e. \textsf{Simple} for simple (irrotational) spherical particles, the total number of particles and a set of data for each particle. In case of spherical particles these data consist of the position (vector), radius (float), particle id (int)  and the particle tag (int). The tag is used to assign the particle to specific particle groups. 
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\begin{verbatim}
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BeginParticles
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Simple
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nparticles
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pos0.x pos0.y pos0.z rad0 id0 tag0
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pos1.x pos1.y pos1.z rad1 id1 tag1 
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pos2.x pos2.y pos2.z rad2 id2 tag2 
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...
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posN.x posN.y posN.z radN idN tagN 
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EndParticles
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\end{verbatim}
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\subsubsection{Particle Types}
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\begin{tabular}[h!]{|l|l|}
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\hline
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keyword & description \\
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\hline
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\hline
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Simple & irrotational spherical particle \\
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%SimpleRot & rotational spherical particle \\
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\hline
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\end{tabular}
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\subsection{Connectivity}
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A list of predefined connections between particles is necessary for the definition of particle interactions which are persistent and not dynamically formed during the simulation, i.e. bonds. The connectivity section of the geometry file contains beginning and end markers, the number of connections and for each connection the ids (int) of the two particles involved and a tag (int) which assigns the connection to a connection group. The pairs of particle ids must be ordered i.e. the first id must be less than the second one.
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\begin{verbatim}
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BeginConnect
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nconnect
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id0_1 id0_2 tag0
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id1_1 id1_2 tag1
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id2_1 id2_2 tag2
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...
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idN_1 idN_2 tagN
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EndConnect
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\end{verbatim}
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\textit{Should we define the syntax for n-particle ($n>2$) connections or leave that for later versions?}
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\label{sec:prp}
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\section{Example}
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Simple example: boundaries periodic in x, open in y and z, 8 irrotational spherical particles of radius 1.0, positioned at the corners of a cube and connected along the edges of the cube. The particles are grouped into 2 groups, representing the particles with $y=0$ and $y=2$ respectively. The tags are 0 for $y=0.0$ and 1 for $y=2.0$. The connections all belong to the same group. \textbf{Note:} The particle tags and the connection tags are independent of each other, i.e. we can use ``0'' as a connection tag even if ``0'' is already used as a particle tag. 
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%%\newpage
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\begin{verbatim}
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LSMGeometry 1.2
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BoundingBox -1.0 -1.0 -1.0 3.0 3.0 3.0
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PeriodicBoundaries 1 0 0
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Dimension 3D
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BeginParticles
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Simple
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8
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0.0 0.0 0.0 1.0 0 0
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0.0 0.0 1.0 1.0 1 0
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0.0 1.0 0.0 1.0 2 1
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0.0 1.0 1.0 1.0 3 1 
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1.0 0.0 0.0 1.0 4 0
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1.0 0.0 1.0 1.0 5 0
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1.0 1.0 0.0 1.0 6 1 
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1.0 1.0 1.0 1.0 7 1 
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EndParticles
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BeginConnect
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12
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0 1 0
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0 2 0
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0 4 0
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1 3 0
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1 5 0
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2 3 0
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2 6 0
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3 7 0
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4 5 0
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4 6 0
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5 7 0
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6 7 0
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EndConnect
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\end{verbatim}
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\section{History}
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\begin{tabular}{|r|l|}
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\hline
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10.6.2003 & initial version \\
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11.9.2003 & version 1.1 , changed from multiple to single tag for particles \\
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3.2.2004 & version 1.2., added 2D/3D indication \\
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17.2.2011 & SimpleRot is no longer supported by ESyS-Particle, with the Simple particle type now encompassing both rotational and irrotational particles
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\hline
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\end{tabular}
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\end{document}
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=== added file 'trunk/Doc/FileFormat.txt'
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--- trunk/Doc/FileFormat.txt	1970-01-01 00:00:00 +0000
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+++ trunk/Doc/FileFormat.txt	2013-05-08 08:43:26 +0000
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Input File Format for ESyS-Particle
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v0.01, 10.06.2003
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-------------------
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The input is split into 2 Files, one for geometry (.geo), one for material
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properties (.prp). Rationale: Makes it possible to exchange the properties
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independently from the
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=== added directory 'trunk/Doc/Manual'
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=== added file 'trunk/Doc/Manual/distutils.sty'
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--- trunk/Doc/Manual/distutils.sty	1970-01-01 00:00:00 +0000
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+++ trunk/Doc/Manual/distutils.sty	2013-05-08 08:43:26 +0000
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%
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% LaTeX commands and macros needed for the two Distutils manuals,
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% inst.tex and dist.tex.
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%
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% $Id$
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%
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% My gripe list about the Python style files:
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%  * I want italics in verbatim environments for variable
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%    text (verbatim.sty?)
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%  * I hate escaping underscores (url.sty fixes this)
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% '\command' is for Distutils commands which, depending on your
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% perspective, are just arguments to the setup script, or sub-
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% commands of the setup script, or the classes that implement
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% each "command".
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\newcommand{\command}[1]{\code{#1}}
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% '\option' is for Distutils options *in* the setup script.  Command-
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% line options *to* the setup script are marked up in the usual
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% way, ie. with '\programopt' or '\longprogramopt'
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\newcommand{\option}[1]{\textsf{\small{#1}}}
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% '\filevar' is for variable components of file/path names -- eg.
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% when you put 'prefix' in a pathname, you mark it up with
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% '\filevar' so that it still looks pathname-ish, but is
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% distinguished from the literal part of the path.  Fred says
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% this can be accomplished just fine with '\var', but I violently
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% disagree.  Pistols at dawn will sort this one out.
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\newcommand{\filevar}[1]{{\textsl{\filenq{#1}}}}
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% Just while the code and docs are still under development.
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\newcommand{\XXX}[1]{\textbf{**#1**}}
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=== added file 'trunk/Doc/Manual/dump-file.tex'
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--- trunk/Doc/Manual/dump-file.tex	1970-01-01 00:00:00 +0000
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\chapter{The Checkpoint Data Format}
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\label{app::dump}
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=== added file 'trunk/Doc/Manual/fancyhdr.sty'
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--- trunk/Doc/Manual/fancyhdr.sty	1970-01-01 00:00:00 +0000
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+++ trunk/Doc/Manual/fancyhdr.sty	2013-05-08 08:43:26 +0000
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% fancyhdr.sty version 1.99d
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% Fancy headers and footers for LaTeX.
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% Piet van Oostrum, Dept of Computer Science, University of Utrecht
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% Padualaan 14, P.O. Box 80.089, 3508 TB Utrecht, The Netherlands
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% Telephone: +31 30 2532180. Email: piet@cs.ruu.nl
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% ========================================================================
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% LICENCE: This is free software. You are allowed to use and distribute
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% this software in any way you like. You are also allowed to make modified
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% versions of it, but you can distribute a modified version only if you
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% clearly indicate that it is a modified version and the person(s) who
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% modified it. This indication should be in a prominent place, e.g. in the
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% top of the file. If possible a contact address, preferably by email,
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% should be given for these persons. If that is feasible the modifications
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% should be indicated in the source code.
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% ========================================================================
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% MODIFICATION HISTORY:
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% Sep 16, 1994
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% version 1.4: Correction for use with \reversemargin
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% Sep 29, 1994:
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% version 1.5: Added the \iftopfloat, \ifbotfloat and \iffloatpage commands
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% Oct 4, 1994:
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% version 1.6: Reset single spacing in headers/footers for use with
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% setspace.sty or doublespace.sty
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% Oct 4, 1994:
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% version 1.7: changed \let\@mkboth\markboth to
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% \def\@mkboth{\protect\markboth} to make it more robust
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% Dec 5, 1994:
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% version 1.8: corrections for amsbook/amsart: define \@chapapp and (more
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% importantly) use the \chapter/sectionmark definitions from ps@headings if
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% they exist (which should be true for all standard classes).
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% May 31, 1995:
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% version 1.9: The proposed \renewcommand{\headrulewidth}{\iffloatpage...
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% construction in the doc did not work properly with the fancyplain style. 
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% June 1, 1995:
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% version 1.91: The definition of \@mkboth wasn't restored on subsequent
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% \pagestyle{fancy}'s.
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% June 1, 1995:
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% version 1.92: The sequence \pagestyle{fancyplain} \pagestyle{plain}
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% \pagestyle{fancy} would erroneously select the plain version.
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% June 1, 1995:
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% version 1.93: \fancypagestyle command added.
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% Dec 11, 1995:
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% version 1.94: suggested by Conrad Hughes <chughes@maths.tcd.ie>
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% CJCH, Dec 11, 1995: added \footruleskip to allow control over footrule
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% position (old hardcoded value of .3\normalbaselineskip is far too high
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% when used with very small footer fonts).
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% Jan 31, 1996:
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% version 1.95: call \@normalsize in the reset code if that is defined,
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% otherwise \normalsize.
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% this is to solve a problem with ucthesis.cls, as this doesn't
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% define \@currsize. Unfortunately for latex209 calling \normalsize doesn't
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% work as this is optimized to do very little, so there \@normalsize should
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% be called. Hopefully this code works for all versions of LaTeX known to
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% mankind.  
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% April 25, 1996:
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% version 1.96: initialize \headwidth to a magic (negative) value to catch
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% most common cases that people change it before calling \pagestyle{fancy}.
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% Note it can't be initialized when reading in this file, because
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% \textwidth could be changed afterwards. This is quite probable.
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% We also switch to \MakeUppercase rather than \uppercase and introduce a
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% \nouppercase command for use in headers. and footers.
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% May 3, 1996:
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% version 1.97: Two changes:
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% 1. Undo the change in version 1.8 (using the pagestyle{headings} defaults
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% for the chapter and section marks. The current version of amsbook and
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% amsart classes don't seem to need them anymore. Moreover the standard
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% latex classes don't use \markboth if twoside isn't selected, and this is
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% confusing as \leftmark doesn't work as expected.
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% 2. include a call to \ps@empty in ps@@fancy. This is to solve a problem
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% in the amsbook and amsart classes, that make global changes to \topskip,
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% which are reset in \ps@empty. Hopefully this doesn't break other things.
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% May 7, 1996:
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% version 1.98:
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% Introduced the new commands \fancyhead, \fancyfoot, and \fancyhf.
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% Changed \headrulewidth, \footrulewidth, \footruleskip to
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% macros rather than length parameters, In this way they can be
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% conditionalized and they don't consume length registers. There is no need
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% to have them as length registers unless you want to do calculations with
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% incompatible (i.e. if you have a file that uses \setlength or \xxxx=)
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% May 10, 1996:
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% consumed by the \@[xy]lhead etc. macros.
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% June 24, 1997:
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% version 1.99c:
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% corrected \nouppercase to also include the protected form of \MakeUppercase
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% \global added to manipulation of \headwidth.
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% \iffootnote command added.
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% Some comments added about \@fancyhead and \@fancyfoot.
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% Aug 24, 1998
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% version 1.99d
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% Changed the default \ps@empty to \ps@@empty in order to allow
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% \fancypagestyle{empty} redefinition.
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\let\fancy@def\gdef
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\def\if@mpty#1#2#3{\def\temp@ty{#1}\ifx\@empty\temp@ty #2\else#3\fi}
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% Usage: \@forc \var{charstring}{command to be executed for each char}
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% This is similar to LaTeX's \@tfor, but expands the charstring.
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\def\@forc#1#2#3{\expandafter\f@rc\expandafter#1\expandafter{#2}{#3}}
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\def\f@rc#1#2#3{\def\temp@ty{#2}\ifx\@empty\temp@ty\else
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                                    \f@@rc#1#2\f@@rc{#3}\fi}
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\def\f@@rc#1#2#3\f@@rc#4{\def#1{#2}#4\f@rc#1{#3}{#4}}
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% Usage: \f@nfor\name:=list\do{body}
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% Like LaTeX's \@for but an empty list is treated as a list with an empty
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% element
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\newcommand{\f@nfor}[3]{\edef\@fortmp{#2}%
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    \expandafter\@forloop#2,\@nil,\@nil\@@#1{#3}}
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% Usage: \def@ult \cs{defaults}{argument}
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% sets \cs to the characters from defaults appearing in argument
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% or defaults if it would be empty. All characters are lowercased.
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\newcommand\def@ult[3]{%
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    \def#1{}%
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    \@forc\tmpf@ra{#2}%
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        {\expandafter\if@in\tmpf@ra\temp@a{\edef#1{#1\tmpf@ra}}{}}%
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    \ifx\@empty#1\def#1{#2}\fi}
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% 
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% \if@in <char><set><truecase><falsecase>
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%
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\newcommand{\if@in}[4]{%
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    \edef\temp@a{#2}\def\temp@b##1#1##2\temp@b{\def\temp@b{##1}}%
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    \expandafter\temp@b#2#1\temp@b\ifx\temp@a\temp@b #4\else #3\fi}
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\newcommand{\fancyhead}{\@ifnextchar[{\f@ncyhf h}{\f@ncyhf h[]}}
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\newcommand{\fancyfoot}{\@ifnextchar[{\f@ncyhf f}{\f@ncyhf f[]}}
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\newcommand{\fancyhf}{\@ifnextchar[{\f@ncyhf {}}{\f@ncyhf {}[]}}
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% The header and footer fields are stored in command sequences with
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% names of the form: \f@ncy<x><y><z> with <x> for [eo], <y> form [lcr]
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% and <z> from [hf].
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\def\f@ncyhf#1[#2]#3{%
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    \def\temp@c{}%
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    \@forc\tmpf@ra{#2}%
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        {\expandafter\if@in\tmpf@ra{eolcrhf,EOLCRHF}%
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            {}{\edef\temp@c{\temp@c\tmpf@ra}}}%
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    \ifx\@empty\temp@c\else
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        \ifx\PackageError\undefined
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          [#2]}\else
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        \PackageError{Fancyhdr}{Illegal char `\temp@c' in fancyhdr argument:
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          [#2]}{}\fi
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    \fi
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    \f@nfor\temp@c{#2}%
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        {\def@ult\f@@@eo{eo}\temp@c
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         \def@ult\f@@@lcr{lcr}\temp@c
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         \def@ult\f@@@hf{hf}{#1\temp@c}%
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         \@forc\f@@eo\f@@@eo
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             {\@forc\f@@lcr\f@@@lcr
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                 {\@forc\f@@hf\f@@@hf
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                     {\expandafter\fancy@def\csname
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                      f@ncy\f@@eo\f@@lcr\f@@hf\endcsname
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                      {#3}}}}}}
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% Fancyheadings version 1 commands. These are more or less deprecated,
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% but they continue to work.
4360
172
4361
173
\newcommand{\lhead}{\@ifnextchar[{\@xlhead}{\@ylhead}}
4362
174
\def\@xlhead[#1]#2{\fancy@def\f@ncyelh{#1}\fancy@def\f@ncyolh{#2}}
4363
175
\def\@ylhead#1{\fancy@def\f@ncyelh{#1}\fancy@def\f@ncyolh{#1}}
4364
176
4365
177
\newcommand{\chead}{\@ifnextchar[{\@xchead}{\@ychead}}
4366
178
\def\@xchead[#1]#2{\fancy@def\f@ncyech{#1}\fancy@def\f@ncyoch{#2}}
4367
179
\def\@ychead#1{\fancy@def\f@ncyech{#1}\fancy@def\f@ncyoch{#1}}
4368
180
4369
181
\newcommand{\rhead}{\@ifnextchar[{\@xrhead}{\@yrhead}}
4370
182
\def\@xrhead[#1]#2{\fancy@def\f@ncyerh{#1}\fancy@def\f@ncyorh{#2}}
4371
183
\def\@yrhead#1{\fancy@def\f@ncyerh{#1}\fancy@def\f@ncyorh{#1}}
4372
184
4373
185
\newcommand{\lfoot}{\@ifnextchar[{\@xlfoot}{\@ylfoot}}
4374
186
\def\@xlfoot[#1]#2{\fancy@def\f@ncyelf{#1}\fancy@def\f@ncyolf{#2}}
4375
187
\def\@ylfoot#1{\fancy@def\f@ncyelf{#1}\fancy@def\f@ncyolf{#1}}
4376
188
4377
189
\newcommand{\cfoot}{\@ifnextchar[{\@xcfoot}{\@ycfoot}}
4378
190
\def\@xcfoot[#1]#2{\fancy@def\f@ncyecf{#1}\fancy@def\f@ncyocf{#2}}
4379
191
\def\@ycfoot#1{\fancy@def\f@ncyecf{#1}\fancy@def\f@ncyocf{#1}}
4380
192
4381
193
\newcommand{\rfoot}{\@ifnextchar[{\@xrfoot}{\@yrfoot}}
4382
194
\def\@xrfoot[#1]#2{\fancy@def\f@ncyerf{#1}\fancy@def\f@ncyorf{#2}}
4383
195
\def\@yrfoot#1{\fancy@def\f@ncyerf{#1}\fancy@def\f@ncyorf{#1}}
4384
196
4385
197
\newdimen\headwidth
4386
198
\newcommand{\headrulewidth}{0.4pt}
4387
199
\newcommand{\footrulewidth}{\z@skip}
4388
200
\newcommand{\footruleskip}{.3\normalbaselineskip}
4389
201
4390
202
% Fancyplain stuff shouldn't be used anymore (rather
4391
203
% \fancypagestyle{plain} should be used), but it must be present for
4392
204
% compatibility reasons.
4393
205
4394
206
\newcommand{\plainheadrulewidth}{\z@skip}
4395
207
\newcommand{\plainfootrulewidth}{\z@skip}
4396
208
\newif\if@fancyplain \@fancyplainfalse
4397
209
\def\fancyplain#1#2{\if@fancyplain#1\else#2\fi}
4398
210
4399
211
\headwidth=-123456789sp %magic constant
4400
212
4401
213
% Command to reset various things in the headers:
4402
214
% a.o.  single spacing (taken from setspace.sty)
4403
215
% and the catcode of ^^M (so that epsf files in the header work if a
4404
216
% verbatim crosses a page boundary)
4405
217
% It also defines a \nouppercase command that disables \uppercase and
4406
218
% \Makeuppercase. It can only be used in the headers and footers.
4407
219
\def\fancy@reset{\restorecr
4408
220
 \def\baselinestretch{1}%
4409
221
 \def\nouppercase##1{{\let\uppercase\relax\let\MakeUppercase\relax
4410
222
     \expandafter\let\csname MakeUppercase \endcsname\relax##1}}%
4411
223
 \ifx\undefined\@newbaseline% NFSS not present; 2.09 or 2e
4412
224
   \ifx\@normalsize\undefined \normalsize % for ucthesis.cls
4413
225
   \else \@normalsize \fi
4414
226
 \else% NFSS (2.09) present
4415
227
  \@newbaseline%
4416
228
 \fi}
4417
229
4418
230
% Initialization of the head and foot text.
4419
231
4420
232
% The default values still contain \fancyplain for compatibility.
4421
233
\fancyhf{} % clear all
4422
234
% lefthead empty on ``plain'' pages, \rightmark on even, \leftmark on odd pages
4423
235
% evenhead empty on ``plain'' pages, \leftmark on even, \rightmark on odd pages
4424
236
\fancyhead[el,or]{\fancyplain{}{\sl\rightmark}}
4425
237
\fancyhead[er,ol]{\fancyplain{}{\sl\leftmark}}
4426
238
\fancyfoot[c]{\rm\thepage} % page number
4427
239
4428
240
% Put together a header or footer given the left, center and
4429
241
% right text, fillers at left and right and a rule.
4430
242
% The \lap commands put the text into an hbox of zero size,
4431
243
% so overlapping text does not generate an errormessage.
4432
244
% These macros have 5 parameters:
4433
245
% 1. \@lodd or \@rodd % This determines at which side the header will stick
4434
246
%    out.
4435
247
% 2. \f@ncyolh, \f@ncyelh, \f@ncyolf or \f@ncyelf. This is the left component.
4436
248
% 3. \f@ncyoch, \f@ncyech, \f@ncyocf or \f@ncyecf. This is the middle comp.
4437
249
% 4. \f@ncyorh, \f@ncyerh, \f@ncyorf or \f@ncyerf. This is the right component.
4438
250
% 5. \@lodd or \@rodd % This determines at which side the header will stick
4439
251
%    out. This is the reverse of parameter nr. 1. One of them is always
4440
252
%    \relax and the other one is \hss (after expansion).
4441
253
4442
254
\def\@fancyhead#1#2#3#4#5{#1\hbox to\headwidth{\fancy@reset\vbox{\hbox
4443
255
{\rlap{\parbox[b]{\headwidth}{\raggedright#2\strut}}\hfill
4444
256
\parbox[b]{\headwidth}{\centering#3\strut}\hfill
4445
257
\llap{\parbox[b]{\headwidth}{\raggedleft#4\strut}}}\headrule}}#5}
4446
258
4447
259
\def\@fancyfoot#1#2#3#4#5{#1\hbox to\headwidth{\fancy@reset\vbox{\footrule
4448
260
\hbox{\rlap{\parbox[t]{\headwidth}{\raggedright#2\strut}}\hfill
4449
261
\parbox[t]{\headwidth}{\centering#3\strut}\hfill
4450
262
\llap{\parbox[t]{\headwidth}{\raggedleft#4\strut}}}}}#5}
4451
263
4452
264
\def\headrule{{\if@fancyplain\let\headrulewidth\plainheadrulewidth\fi
4453
265
\hrule\@height\headrulewidth\@width\headwidth \vskip-\headrulewidth}}
4454
266
4455
267
\def\footrule{{\if@fancyplain\let\footrulewidth\plainfootrulewidth\fi
4456
268
\vskip-\footruleskip\vskip-\footrulewidth
4457
269
\hrule\@width\headwidth\@height\footrulewidth\vskip\footruleskip}}
4458
270
4459
271
\def\ps@fancy{%
4460
272
\@ifundefined{@chapapp}{\let\@chapapp\chaptername}{}%for amsbook
4461
273
%
4462
274
% Define \MakeUppercase for old LaTeXen.
4463
275
% Note: we used \def rather than \let, so that \let\uppercase\relax (from
4464
276
% the version 1 documentation) will still work.
4465
277
%
4466
278
\@ifundefined{MakeUppercase}{\def\MakeUppercase{\uppercase}}{}%
4467
279
\@ifundefined{chapter}{\def\sectionmark##1{\markboth
4468
280
{\MakeUppercase{\ifnum \c@secnumdepth>\z@
4469
281
 \thesection\hskip 1em\relax \fi ##1}}{}}%
4470
282
\def\subsectionmark##1{\markright {\ifnum \c@secnumdepth >\@ne
4471
283
 \thesubsection\hskip 1em\relax \fi ##1}}}%
4472
284
{\def\chaptermark##1{\markboth {\MakeUppercase{\ifnum \c@secnumdepth>\m@ne
4473
285
 \@chapapp\ \thechapter. \ \fi ##1}}{}}%
4474
286
\def\sectionmark##1{\markright{\MakeUppercase{\ifnum \c@secnumdepth >\z@
4475
287
 \thesection. \ \fi ##1}}}}%
4476
288
%\csname ps@headings\endcsname % use \ps@headings defaults if they exist
4477
289
\ps@@fancy
4478
290
\gdef\ps@fancy{\@fancyplainfalse\ps@@fancy}%
4479
291
% Initialize \headwidth if the user didn't
4480
292
%
4481
293
\ifdim\headwidth<0sp
4482
294
%
4483
295
% This catches the case that \headwidth hasn't been initialized and the
4484
296
% case that the user added something to \headwidth in the expectation that
4485
297
% it was initialized to \textwidth. We compensate this now. This loses if
4486
298
% the user intended to multiply it by a factor. But that case is more
4487
299
% likely done by saying something like \headwidth=1.2\textwidth. 
4488
300
% The doc says you have to change \headwidth after the first call to
4489
301
% \pagestyle{fancy}. This code is just to catch the most common cases were
4490
302
% that requirement is violated.
4491
303
%
4492
304
    \global\advance\headwidth123456789sp\global\advance\headwidth\textwidth
4493
305
\fi}
4494
306
\def\ps@fancyplain{\ps@fancy \let\ps@plain\ps@plain@fancy}
4495
307
\def\ps@plain@fancy{\@fancyplaintrue\ps@@fancy}
4496
308
\let\ps@@empty\ps@empty
4497
309
\def\ps@@fancy{%
4498
310
\ps@@empty % This is for amsbook/amsart, which do strange things with \topskip
4499
311
\def\@mkboth{\protect\markboth}%
4500
312
\def\@oddhead{\@fancyhead\@lodd\f@ncyolh\f@ncyoch\f@ncyorh\@rodd}%
4501
313
\def\@oddfoot{\@fancyfoot\@lodd\f@ncyolf\f@ncyocf\f@ncyorf\@rodd}%
4502
314
\def\@evenhead{\@fancyhead\@rodd\f@ncyelh\f@ncyech\f@ncyerh\@lodd}%
4503
315
\def\@evenfoot{\@fancyfoot\@rodd\f@ncyelf\f@ncyecf\f@ncyerf\@lodd}%
4504
316
}
4505
317
\def\@lodd{\if@reversemargin\hss\else\relax\fi}
4506
318
\def\@rodd{\if@reversemargin\relax\else\hss\fi}
4507
319
4508
320
\newif\iffootnote
4509
321
\let\latex@makecol\@makecol
4510
322
\def\@makecol{\ifvoid\footins\footnotetrue\else\footnotefalse\fi
4511
323
\let\topfloat\@toplist\let\botfloat\@botlist\latex@makecol}
4512
324
\def\iftopfloat#1#2{\ifx\topfloat\empty #2\else #1\fi}
4513
325
\def\ifbotfloat#1#2{\ifx\botfloat\empty #2\else #1\fi}
4514
326
\def\iffloatpage#1#2{\if@fcolmade #1\else #2\fi}
4515
327
4516
328
\newcommand{\fancypagestyle}[2]{%
4517
329
  \@namedef{ps@#1}{\let\fancy@def\def#2\relax\ps@fancy}}
4518
0
330
4519
=== added file 'trunk/Doc/Manual/fncychap.sty'
4520
--- trunk/Doc/Manual/fncychap.sty	1970-01-01 00:00:00 +0000
4521
+++ trunk/Doc/Manual/fncychap.sty	2013-05-08 08:43:26 +0000
4522
@@ -0,0 +1,433 @@
4523
1
%%% Derived from the original fncychap.sty,
4524
2
%%% but changed ``TWELV'' to ``TWELVE''.
4525
3
4526
4
%%% Copyright   Ulf A. Lindgren
4527
5
%%%             Department of Applied Electronics
4528
6
%%%             Chalmers University of Technology
4529
7
%%%             S-412 96 Gothenburg, Sweden
4530
8
%%%             E-mail lindgren@ae.chalmers.se
4531
9
%%%
4532
10
%%% Note        Permission is granted to modify this file under
4533
11
%%%             the condition that it is saved using another
4534
12
%%%             file and package name.
4535
13
%%%
4536
14
%%% Revision    1.1
4537
15
%%%
4538
16
%%%             Jan. 8th Modified package name base date option
4539
17
%%%             Jan. 22th Modified FmN and FmTi for error in book.cls
4540
18
%%%                  \MakeUppercase{#}->{\MakeUppercase#}
4541
19
%%%             Apr. 6th Modified Lenny option to prevent undesired 
4542
20
%%%                  skip of line.
4543
21
%%%             Nov. 8th Fixed \@chapapp for AMS
4544
22
%%%             Feb. 11th Fixed appendix problem related to Bjarne
4545
23
%%% Last modified    Feb. 11th 1998
4546
24
4547
25
\NeedsTeXFormat{LaTeX2e}[1995/12/01]
4548
26
\ProvidesPackage{fncychap}
4549
27
             [1997/04/06 v1.11
4550
28
                 LaTeX package (Revised chapters)]
4551
29
4552
30
%%%% DEFINITION OF Chapapp variables
4553
31
\newcommand{\CNV}{\huge\bfseries}
4554
32
\newcommand{\ChNameVar}[1]{\renewcommand{\CNV}{#1}}
4555
33
4556
34
4557
35
%%%% DEFINITION OF TheChapter variables
4558
36
\newcommand{\CNoV}{\huge\bfseries}
4559
37
\newcommand{\ChNumVar}[1]{\renewcommand{\CNoV}{#1}}
4560
38
4561
39
\newif\ifUCN
4562
40
\UCNfalse
4563
41
\newif\ifLCN
4564
42
\LCNfalse
4565
43
\def\ChNameLowerCase{\LCNtrue\UCNfalse}
4566
44
\def\ChNameUpperCase{\UCNtrue\LCNfalse}
4567
45
\def\ChNameAsIs{\UCNfalse\LCNfalse}
4568
46
4569
47
%%%%% Fix for AMSBook 971008
4570
48
4571
49
\@ifundefined{@chapapp}{\let\@chapapp\chaptername}{}
4572
50
4573
51
4574
52
%%%%% Fix for Bjarne and appendix 980211
4575
53
4576
54
\newif\ifinapp
4577
55
\inappfalse
4578
56
\renewcommand\appendix{\par
4579
57
  \setcounter{chapter}{0}%
4580
58
  \setcounter{section}{0}%
4581
59
  \inapptrue%
4582
60
  \renewcommand\@chapapp{\appendixname}%
4583
61
  \renewcommand\thechapter{\@Alph\c@chapter}}
4584
62
4585
63
%%%%%
4586
64
4587
65
\newcommand{\FmN}[1]{%
4588
66
\ifUCN
4589
67
   {\MakeUppercase#1}\LCNfalse
4590
68
\else
4591
69
   \ifLCN
4592
70
      {\MakeLowercase#1}\UCNfalse
4593
71
   \else #1
4594
72
   \fi
4595
73
\fi}
4596
74
4597
75
4598
76
%%%% DEFINITION OF Title variables
4599
77
\newcommand{\CTV}{\Huge\bfseries}
4600
78
\newcommand{\ChTitleVar}[1]{\renewcommand{\CTV}{#1}}
4601
79
4602
80
%%%% DEFINITION OF the basic rule width
4603
81
\newlength{\RW}
4604
82
\setlength{\RW}{1pt}
4605
83
\newcommand{\ChRuleWidth}[1]{\setlength{\RW}{#1}}
4606
84
4607
85
\newif\ifUCT
4608
86
\UCTfalse
4609
87
\newif\ifLCT
4610
88
\LCTfalse
4611
89
\def\ChTitleLowerCase{\LCTtrue\UCTfalse}
4612
90
\def\ChTitleUpperCase{\UCTtrue\LCTfalse}
4613
91
\def\ChTitleAsIs{\UCTfalse\LCTfalse}
4614
92
\newcommand{\FmTi}[1]{%
4615
93
\ifUCT
4616
94
4617
95
   {\MakeUppercase#1}\LCTfalse
4618
96
\else
4619
97
   \ifLCT
4620
98
      {\MakeLowercase#1}\UCTfalse
4621
99
   \else #1
4622
100
   \fi
4623
101
\fi}
4624
102
4625
103
4626
104
4627
105
\newlength{\mylen}
4628
106
\newlength{\myhi}
4629
107
\newlength{\px}
4630
108
\newlength{\py}
4631
109
\newlength{\pyy}
4632
110
\newlength{\pxx}
4633
111
4634
112
4635
113
\def\mghrulefill#1{\leavevmode\leaders\hrule\@height #1\hfill\kern\z@}
4636
114
4637
115
\newcommand{\DOCH}{%
4638
116
  \CNV\FmN{\@chapapp}\space \CNoV\thechapter
4639
117
  \par\nobreak
4640
118
  \vskip 20\p@
4641
119
  }
4642
120
\newcommand{\DOTI}[1]{%
4643
121
    \CTV\FmTi{#1}\par\nobreak
4644
122
    \vskip 40\p@
4645
123
    }
4646
124
\newcommand{\DOTIS}[1]{%
4647
125
    \CTV\FmTi{#1}\par\nobreak
4648
126
    \vskip 40\p@
4649
127
    }
4650
128
4651
129
%%%%%% SONNY DEF
4652
130
4653
131
\DeclareOption{Sonny}{%
4654
132
  \ChNameVar{\Large\sf}
4655
133
  \ChNumVar{\Huge}
4656
134
  \ChTitleVar{\Large\sf}
4657
135
  \ChRuleWidth{0.5pt}
4658
136
  \ChNameUpperCase
4659
137
  \renewcommand{\DOCH}{%
4660
138
    \raggedleft
4661
139
    \CNV\FmN{\@chapapp}\space \CNoV\thechapter
4662
140
    \par\nobreak
4663
141
    \vskip 40\p@}
4664
142
  \renewcommand{\DOTI}[1]{%
4665
143
    \CTV\raggedleft\mghrulefill{\RW}\par\nobreak
4666
144
    \vskip 5\p@
4667
145
    \CTV\FmTi{#1}\par\nobreak
4668
146
    \mghrulefill{\RW}\par\nobreak
4669
147
    \vskip 40\p@}
4670
148
  \renewcommand{\DOTIS}[1]{%
4671
149
    \CTV\raggedleft\mghrulefill{\RW}\par\nobreak
4672
150
    \vskip 5\p@
4673
151
    \CTV\FmTi{#1}\par\nobreak
4674
152
    \mghrulefill{\RW}\par\nobreak
4675
153
    \vskip 40\p@}
4676
154
}
4677
155
4678
156
%%%%%% LENNY DEF
4679
157
4680
158
\DeclareOption{Lenny}{%
4681
159
4682
160
  \ChNameVar{\fontsize{14}{16}\usefont{OT1}{phv}{m}{n}\selectfont}
4683
161
  \ChNumVar{\fontsize{60}{62}\usefont{OT1}{ptm}{m}{n}\selectfont}
4684
162
  \ChTitleVar{\Huge\bfseries\rm}
4685
163
  \ChRuleWidth{1pt}
4686
164
  \renewcommand{\DOCH}{%
4687
165
    \settowidth{\px}{\CNV\FmN{\@chapapp}}
4688
166
    \addtolength{\px}{2pt}
4689
167
    \settoheight{\py}{\CNV\FmN{\@chapapp}}
4690
168
    \addtolength{\py}{1pt}
4691
169
4692
170
    \settowidth{\mylen}{\CNV\FmN{\@chapapp}\space\CNoV\thechapter}
4693
171
    \addtolength{\mylen}{1pt}
4694
172
    \settowidth{\pxx}{\CNoV\thechapter}
4695
173
    \addtolength{\pxx}{-1pt}
4696
174
4697
175
    \settoheight{\pyy}{\CNoV\thechapter}
4698
176
    \addtolength{\pyy}{-2pt}
4699
177
    \setlength{\myhi}{\pyy}
4700
178
    \addtolength{\myhi}{-1\py}
4701
179
    \par
4702
180
    \parbox[b]{\textwidth}{%
4703
181
    \rule[\py]{\RW}{\myhi}%
4704
182
    \hskip -\RW%
4705
183
    \rule[\pyy]{\px}{\RW}%
4706
184
    \hskip -\px%
4707
185
    \raggedright%
4708
186
    \CNV\FmN{\@chapapp}\space\CNoV\thechapter%
4709
187
    \hskip1pt%
4710
188
    \mghrulefill{\RW}%
4711
189
    \rule{\RW}{\pyy}\par\nobreak%
4712
190
    \vskip -\baselineskip%
4713
191
    \vskip -\pyy%
4714
192
    \hskip \mylen%
4715
193
    \mghrulefill{\RW}\par\nobreak%
4716
194
    \vskip \pyy}%
4717
195
    \vskip 20\p@}
4718
196
 
4719
197
4720
198
  \renewcommand{\DOTI}[1]{%
4721
199
    \raggedright
4722
200
    \CTV\FmTi{#1}\par\nobreak
4723
201
    \vskip 40\p@}
4724
202
4725
203
  \renewcommand{\DOTIS}[1]{%
4726
204
    \raggedright
4727
205
    \CTV\FmTi{#1}\par\nobreak
4728
206
    \vskip 40\p@}
4729
207
 }
4730
208
4731
209
4732
210
%%%%%%% GLENN DEF
4733
211
4734
212
4735
213
\DeclareOption{Glenn}{%
4736
214
  \ChNameVar{\bfseries\Large\sf}
4737
215
  \ChNumVar{\Huge}
4738
216
  \ChTitleVar{\bfseries\Large\rm}
4739
217
  \ChRuleWidth{1pt}
4740
218
  \ChNameUpperCase
4741
219
  \ChTitleUpperCase
4742
220
  \renewcommand{\DOCH}{%
4743
221
    \settoheight{\myhi}{\CTV\FmTi{Test}}
4744
222
    \setlength{\py}{\baselineskip}
4745
223
    \addtolength{\py}{\RW}
4746
224
    \addtolength{\py}{\myhi}
4747
225
    \setlength{\pyy}{\py}
4748
226
    \addtolength{\pyy}{-1\RW}
4749
227
     
4750
228
    \raggedright
4751
229
    \CNV\FmN{\@chapapp}\space\CNoV\thechapter
4752
230
    \hskip 3pt\mghrulefill{\RW}\rule[-1\pyy]{2\RW}{\py}\par\nobreak}
4753
231
4754
232
  \renewcommand{\DOTI}[1]{%
4755
233
    \addtolength{\pyy}{-4pt}
4756
234
    \settoheight{\myhi}{\CTV\FmTi{#1}}
4757
235
    \addtolength{\myhi}{\py}
4758
236
    \addtolength{\myhi}{-1\RW}
4759
237
    \vskip -1\pyy
4760
238
    \rule{2\RW}{\myhi}\mghrulefill{\RW}\hskip 2pt
4761
239
    \raggedleft\CTV\FmTi{#1}\par\nobreak
4762
240
    \vskip 80\p@}
4763
241
4764
242
  \renewcommand{\DOTIS}[1]{%
4765
243
    \setlength{\py}{10pt}
4766
244
    \setlength{\pyy}{\py}
4767
245
    \addtolength{\pyy}{\RW}
4768
246
    \setlength{\myhi}{\baselineskip}
4769
247
    \addtolength{\myhi}{\pyy}
4770
248
    \mghrulefill{\RW}\rule[-1\py]{2\RW}{\pyy}\par\nobreak
4771
249
%    \addtolength{}{}
4772
250
\vskip -1\baselineskip
4773
251
    \rule{2\RW}{\myhi}\mghrulefill{\RW}\hskip 2pt
4774
252
    \raggedleft\CTV\FmTi{#1}\par\nobreak
4775
253
    \vskip 60\p@}
4776
254
  }
4777
255
4778
256
%%%%%%% CONNY DEF
4779
257
4780
258
\DeclareOption{Conny}{%
4781
259
  \ChNameUpperCase
4782
260
  \ChTitleUpperCase  
4783
261
  \ChNameVar{\centering\Huge\rm\bfseries}
4784
262
  \ChNumVar{\Huge}
4785
263
  \ChTitleVar{\centering\Huge\rm}
4786
264
  \ChRuleWidth{2pt}
4787
265
4788
266
  \renewcommand{\DOCH}{%
4789
267
    \mghrulefill{3\RW}\par\nobreak
4790
268
    \vskip -0.5\baselineskip
4791
269
    \mghrulefill{\RW}\par\nobreak
4792
270
    \CNV\FmN{\@chapapp}\space \CNoV\thechapter
4793
271
    \par\nobreak
4794
272
    \vskip -0.5\baselineskip
4795
273
   }
4796
274
  \renewcommand{\DOTI}[1]{%
4797
275
    \mghrulefill{\RW}\par\nobreak
4798
276
    \CTV\FmTi{#1}\par\nobreak
4799
277
    \vskip 60\p@
4800
278
    }
4801
279
  \renewcommand{\DOTIS}[1]{%
4802
280
    \mghrulefill{\RW}\par\nobreak
4803
281
    \CTV\FmTi{#1}\par\nobreak
4804
282
    \vskip 60\p@
4805
283
    }
4806
284
  }
4807
285
4808
286
%%%%%%% REJNE DEF
4809
287
4810
288
\DeclareOption{Rejne}{%
4811
289
4812
290
  \ChNameUpperCase
4813
291
  \ChTitleUpperCase  
4814
292
  \ChNameVar{\centering\Large\rm}
4815
293
  \ChNumVar{\Huge}
4816
294
  \ChTitleVar{\centering\Huge\rm}
4817
295
  \ChRuleWidth{1pt}
4818
296
  \renewcommand{\DOCH}{%
4819
297
    \settoheight{\py}{\CNoV\thechapter}
4820
298
    \addtolength{\py}{-1pt}
4821
299
    \CNV\FmN{\@chapapp}\par\nobreak
4822
300
    \vskip 20\p@
4823
301
    \setlength{\myhi}{2\baselineskip}
4824
302
    \setlength{\px}{\myhi}
4825
303
    \addtolength{\px}{-1\RW}
4826
304
    \rule[-1\px]{\RW}{\myhi}\mghrulefill{\RW}\hskip
4827
305
    10pt\raisebox{-0.5\py}{\CNoV\thechapter}\hskip
4828
306
10pt\mghrulefill{\RW}\rule[-1\px]{\RW}{\myhi}\par\nobreak
4829
307
     \vskip -1\p@
4830
308
    }
4831
309
  \renewcommand{\DOTI}[1]{%
4832
310
    \setlength{\mylen}{\textwidth}
4833
311
    \addtolength{\mylen}{-2\RW}
4834
312
    {\vrule width\RW}\parbox{\mylen}{\CTV\FmTi{#1}}{\vrule
4835
313
width\RW}\par\nobreak
4836
314
    \vskip
4837
315
-1pt\rule{\RW}{2\baselineskip}\mghrulefill{\RW}\rule{\RW}{2\baselineskip}
4838
316
    \vskip 60\p@
4839
317
    }
4840
318
  \renewcommand{\DOTIS}[1]{%
4841
319
    \setlength{\py}{\fboxrule}
4842
320
    \setlength{\fboxrule}{\RW}
4843
321
    \setlength{\mylen}{\textwidth}
4844
322
    \addtolength{\mylen}{-2\RW}
4845
323
    \fbox{\parbox{\mylen}{\vskip
4846
324
2\baselineskip\CTV\FmTi{#1}\par\nobreak\vskip \baselineskip}} 
4847
325
    \setlength{\fboxrule}{\py}
4848
326
    \vskip 60\p@
4849
327
    }
4850
328
  }
4851
329
4852
330
4853
331
%%%%%%% BJARNE DEF
4854
332
4855
333
\DeclareOption{Bjarne}{%
4856
334
  \ChNameUpperCase
4857
335
  \ChTitleUpperCase  
4858
336
  \ChNameVar{\raggedleft\normalsize\rm}
4859
337
  \ChNumVar{\raggedleft \bfseries\Large}
4860
338
  \ChTitleVar{\raggedleft \Large\rm}
4861
339
  \ChRuleWidth{1pt}
4862
340
4863
341
4864
342
%% Note thechapter -> c@chapter fix appendix bug
4865
343
4866
344
  \newcounter{AlphaCnt}
4867
345
  \newcounter{AlphaDecCnt}
4868
346
  \newcommand{\AlphaNo}{%
4869
347
    \ifcase\number\theAlphaCnt
4870
348
      \ifnum\c@chapter=0
4871
349
        ZERO\else{}\fi
4872
350
    \or ONE\or TWO\or THREE\or FOUR\or FIVE
4873
351
    \or SIX\or SEVEN\or EIGHT\or NINE\or TEN
4874
352
    \or ELEVEN\or TWELVE\or THIRTEEN\or FOURTEEN\or FIFTEEN
4875
353
    \or SIXTEEN\or SEVENTEEN\or EIGHTEEN\or NINETEEN\fi
4876
354
}
4877
355
4878
356
  \newcommand{\AlphaDecNo}{%
4879
357
    \setcounter{AlphaDecCnt}{0}
4880
358
    \@whilenum\number\theAlphaCnt>0\do
4881
359
      {\addtocounter{AlphaCnt}{-10}
4882
360
       \addtocounter{AlphaDecCnt}{1}}
4883
361
     \ifnum\number\theAlphaCnt=0
4884
362
     \else
4885
363
       \addtocounter{AlphaDecCnt}{-1}
4886
364
       \addtocounter{AlphaCnt}{10}
4887
365
     \fi
4888
366
     
4889
367
     
4890
368
    \ifcase\number\theAlphaDecCnt\or TEN\or TWENTY\or THIRTY\or
4891
369
    FORTY\or FIFTY\or SIXTY\or SEVENTY\or EIGHTY\or NINETY\fi
4892
370
    }
4893
371
  \newcommand{\TheAlphaChapter}{%
4894
372
    
4895
373
    \ifinapp 
4896
374
      \thechapter
4897
375
    \else
4898
376
      \setcounter{AlphaCnt}{\c@chapter}
4899
377
      \ifnum\c@chapter<20
4900
378
        \AlphaNo
4901
379
      \else
4902
380
        \AlphaDecNo\AlphaNo
4903
381
      \fi
4904
382
    \fi
4905
383
    }  
4906
384
  \renewcommand{\DOCH}{%
4907
385
    \mghrulefill{\RW}\par\nobreak
4908
386
    \CNV\FmN{\@chapapp}\par\nobreak 
4909
387
    \CNoV\TheAlphaChapter\par\nobreak
4910
388
    \vskip -1\baselineskip\vskip 5pt\mghrulefill{\RW}\par\nobreak
4911
389
    \vskip 20\p@
4912
390
    }
4913
391
  \renewcommand{\DOTI}[1]{%
4914
392
    \CTV\FmTi{#1}\par\nobreak
4915
393
    \vskip 40\p@
4916
394
    }
4917
395
  \renewcommand{\DOTIS}[1]{%
4918
396
    \CTV\FmTi{#1}\par\nobreak
4919
397
    \vskip 40\p@
4920
398
    }
4921
399
}
4922
400
4923
401
\DeclareOption*{%
4924
402
  \PackageWarning{fancychapter}{unknown style option}
4925
403
  }
4926
404
4927
405
\ProcessOptions* \relax
4928
406
4929
407
\def\@makechapterhead#1{%
4930
408
  \vspace*{50\p@}%
4931
409
  {\parindent \z@ \raggedright \normalfont
4932
410
    \ifnum \c@secnumdepth >\m@ne
4933
411
      \DOCH
4934
412
    \fi
4935
413
    \interlinepenalty\@M
4936
414
    \DOTI{#1}
4937
415
  }}
4938
416
\def\@schapter#1{\if@twocolumn
4939
417
                   \@topnewpage[\@makeschapterhead{#1}]%
4940
418
                 \else
4941
419
                   \@makeschapterhead{#1}%
4942
420
                   \@afterheading
4943
421
                 \fi}
4944
422
\def\@makeschapterhead#1{%
4945
423
  \vspace*{50\p@}%
4946
424
  {\parindent \z@ \raggedright
4947
425
    \normalfont
4948
426
    \interlinepenalty\@M
4949
427
    \DOTIS{#1}
4950
428
    \vskip 40\p@
4951
429
  }}
4952
430
4953
431
\endinput
4954
432
4955
433
4956
0
434
4957
=== added file 'trunk/Doc/Manual/geo-file.tex'
4958
--- trunk/Doc/Manual/geo-file.tex	1970-01-01 00:00:00 +0000
4959
+++ trunk/Doc/Manual/geo-file.tex	2013-05-08 08:43:26 +0000
4960
@@ -0,0 +1,135 @@
4961
1
\chapter{The Geometry File Format}
4962
2
\label{cha:geofileformat}
4963
3
4964
4
\section{Introduction}
4965
5
The input file described here contains only the description of the model geometry. The material properties of the particles (density \dots) and interactions (spring constant, breaking distance \dots) are described in the script. In order to facilitate this, both particles and predefined connections/interactions have tags.   
4966
6
\subsubsection*{Rationale:}
4967
7
\begin{itemize}
4968
8
\item Makes it possible to change the properties
4969
9
independently from the geometries, for example in order to easily run a suite of simulation with identical geometries but varying material properties.
4970
10
\end{itemize}
4971
11
The input files are pure ASCII files formatted in the way described in the following sections. 
4972
12
\subsubsection*{Rationale:}
4973
13
\begin{itemize}
4974
14
\item ASCII is preferred over binary format for portability and debugability reasons.
4975
15
\item Using some ``standard'' description language, i.e. XML seems 
4976
16
  \begin{itemize}
4977
17
  \item unnecessary as the files are machine generated and read, which reduces the need for flexibility and verbosity
4978
18
  \item a suboptimal solution with respect to file size, i.e. a million particle file would grow quite large if XML was used \footnote{It would be quite large anyway, somewhere around 40--50 byte per particle and 15--20 byte per connection, i.e. a file describing a model consisting of $10^6$ part in a fully connected regular 3D lattice would have a size around 100MB. So we may look at using compressed (libz, libbz2) files at some later stage.} 
4979
19
  \end{itemize}
4980
20
\end{itemize}
4981
21
4982
22
4983
23
\section{The File Format}
4984
24
4985
25
The geometry file specifies the overall model geometry, the particle positions and geometries, the assignment of the particles to some particle groups and the initial connectivity between particles, i.e. the bonds. In case of spherical particles the per-particle geometry is reduced to just the particle radius. 
4986
26
\subsection{File Structure}
4987
27
The geometry file consist of a header and 3 content sections:
4988
28
\begin{enumerate}
4989
29
\item The ``model geometry'' section which contains the containing volume(s) of the model and definition of circular (periodic) boundary conditions
4990
30
\item The ``particles'' section
4991
31
\item The ``connections'' section 
4992
32
\end{enumerate}
4993
33
\subsection{Header}
4994
34
The header just contains an identifier for the file type and the version of the file. 
4995
35
\begin{verbatim}
4996
36
LSMGeometry 1.2
4997
37
\end{verbatim}
4998
38
where \textsf{LSMGeometry} is the identifier and \textsf{1.2} the current version number.
4999
39
5000
40
Reviewer	Review Type	Date Requested	Status
Dion Weatherley		2013-05-08	Disapprove on 2013-05-08
Review via email: mp+162941@code.launchpad.net