lp:zalign

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63. By Felipe Scarel on 2009-08-19

- adding vertical & horizontal block limits to 'mpialign' to avoid unexpected stage 4 errors

62. By Felipe Scarel on 2009-08-16

- tagged 0.9.1 release
- added NEWS file showing user-visible changes during development
- added 'include' directory to packaging

61. By Felipe Scarel on 2009-08-16

- applied GPLv3 license to sources
- added AUTHORS, COPYING, INSTALL and README files
- removed ALIGNER_TYPES (only blocked aligner and linear fickett aligner remain)
- removed CONVERTED (almost all files have been converted to ANSI C)

60. By Felipe Scarel on 2009-08-15

- editing 'linearfickettaligner' module, preparing to convert to C-style -- work in progress

59. By Felipe Scarel on 2009-08-13

- removed Doxygen documentation under the doc/ directory, documentation is included inline in sources

58. By Felipe Scarel on 2009-08-13

- fully documented 'alignment' module
- removed alignment_end() and its PATH_STOP status, they weren't necessary

57. By Felipe Scarel on 2009-08-12

- deleted 'serializable' module
- incorporated needed functionality from 'serializable' into 'alignment'
- 'alignment' module fully rewritten in C-style, interfaces heavily reworked
- corresponding changes made in source files and Makefiles

TODO: 'alignment' documentation still pending

56. By Felipe Scarel on 2009-08-12

- converting 'alignment' module to C-style -- work in progress

55. By Felipe Scarel on 2009-08-12

- removed modules:
    aligner
    globalaligner
    fickettaligner
- integrated above modules' needed functionality into 'linearfickettaligner', now it only depends on 'limitsplotter'
- changed 'blkalign' output slightly, as per 'alignment' variable print size feature

54. By Felipe Scarel on 2009-08-12

- changed program output slightly, now only the 'alignment' module prints alignments to screen
- heavy edits on 'alignment' module, preparing to convert to C-style