Merge lp:~xnox/ubuntu/quantal/libvigraimpex/boost1.49 into lp:ubuntu/quantal/libvigraimpex

Proposed by Dimitri John Ledkov
Status: Merged
Merge reported by: Micah Gersten
Merged at revision: not available
Proposed branch: lp:~xnox/ubuntu/quantal/libvigraimpex/boost1.49
Merge into: lp:ubuntu/quantal/libvigraimpex
Diff against target: 6794 lines (+2317/-4327)
15 files modified
.pc/applied-patches (+1/-1)
.pc/debian-changes-1.7.1+dfsg1-2ubuntu1/include/vigra/numpy_array.hxx (+0/-1922)
.pc/fix-ftbfs-gcc4.7.diff/include/vigra/box.hxx (+545/-0)
.pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_ridge_split.hxx (+449/-0)
.pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_split.hxx (+1199/-0)
.pc/sizeof_ldbl_not_sizeof_dbl.diff/include/vigra/numpy_array.hxx (+0/-1918)
debian/changelog (+30/-0)
debian/control (+1/-1)
debian/patches/debian-changes-1.7.1+dfsg1-2ubuntu1 (+17/-265)
debian/patches/fix-ftbfs-gcc4.7.diff (+66/-0)
debian/patches/series (+3/-1)
include/vigra/box.hxx (+2/-2)
include/vigra/random_forest/rf_ridge_split.hxx (+2/-2)
include/vigra/random_forest/rf_split.hxx (+2/-2)
vigranumpy/docsrc/conf.py.THIS (+0/-213)
To merge this branch: bzr merge lp:~xnox/ubuntu/quantal/libvigraimpex/boost1.49
Reviewer Review Type Date Requested Status
Ubuntu branches Pending
Barry Warsaw Pending
Review via email: mp+110409@code.launchpad.net

Description of the change

This merges libvigraimpex from debian.
Barry, can you please review this package as it has interesting history and you were the last one to merge it.

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Revision history for this message
Barry Warsaw (barry) wrote :

On Jun 14, 2012, at 08:30 PM, Dmitrijs Ledkovs wrote:

>Barry, can you please review this package as it has interesting history and
>you were the last one to merge it.

What a mess! Sigh. Just one thing stands out.

=== modified file 'include/vigra/box.hxx'
--- include/vigra/box.hxx 2011-02-20 23:21:40 +0000
+++ include/vigra/box.hxx 2012-06-14 20:29:21 +0000
> @@ -388,7 +388,7 @@
> if(r.isEmpty())
> return *this;
> if(isEmpty())
> - return operator=(r);
> + return this->operator=(r);
>
> for(unsigned int i = 0; i < DIMENSION; ++i)
> {
> @@ -421,7 +421,7 @@
> if(isEmpty())
> return *this;
> if(r.isEmpty())
> - return operator=(r);
> + return this->operator=(r);
>
> for(unsigned int i = 0; i < DIMENSION; ++i)
> {

=== modified file 'include/vigra/random_forest/rf_ridge_split.hxx'
[...]

Why are these being modified in the source tree? Is this just quilt/bzr
artifacts? Does it actually build with these changes? Are they in a quilt
patch?

Revision history for this message
Dimitri John Ledkov (xnox) wrote :

On 14/06/12 21:49, Barry Warsaw wrote:
> On Jun 14, 2012, at 08:30 PM, Dmitrijs Ledkovs wrote:
>
>> Barry, can you please review this package as it has interesting history and
>> you were the last one to merge it.
>
> What a mess! Sigh. Just one thing stands out.
>
>
> === modified file 'include/vigra/box.hxx'
> === modified file 'include/vigra/random_forest/rf_ridge_split.hxx'
>
> Why are these being modified in the source tree? Is this just quilt/bzr
> artifacts? Does it actually build with these changes? Are they in a quilt
> patch?
>

That is the new fix-ftbfs-gcc4.7.patch from doko, introduced in debian.
That's the reason why I'm merging this =)

Because it's a new patch you get: .pc/ & in tree modifications & an
extra patch in debian/patches/.

=/

--
Regards,
Dmitrijs.

Revision history for this message
Barry Warsaw (barry) wrote :

On Jun 14, 2012, at 09:55 PM, Dmitrijs Ledkovs wrote:

>Because it's a new patch you get: .pc/ & in tree modifications & an
>extra patch in debian/patches/.

:(

Revision history for this message
Dimitri John Ledkov (xnox) wrote :

On 14/06/12 22:02, Barry Warsaw wrote:
> On Jun 14, 2012, at 09:55 PM, Dmitrijs Ledkovs wrote:
>
>> Because it's a new patch you get: .pc/ & in tree modifications & an
>> extra patch in debian/patches/.
>
> :(
>

Will you sponsor this? =)

--
Regards,
Dmitrijs.

Revision history for this message
Barry Warsaw (barry) wrote :

On Jun 14, 2012, at 09:25 PM, Dmitrijs Ledkovs wrote:

>On 14/06/12 22:02, Barry Warsaw wrote:
>> On Jun 14, 2012, at 09:55 PM, Dmitrijs Ledkovs wrote:
>>
>>> Because it's a new patch you get: .pc/ & in tree modifications & an
>>> extra patch in debian/patches/.
>>
>> :(
>>
>
>Will you sponsor this? =)

Sure, if it builds locally for me. :)

Revision history for this message
Dimitri John Ledkov (xnox) wrote :

On 14/06/12 23:05, Barry Warsaw wrote:
> On Jun 14, 2012, at 09:25 PM, Dmitrijs Ledkovs wrote:
>
>> On 14/06/12 22:02, Barry Warsaw wrote:
>>> On Jun 14, 2012, at 09:55 PM, Dmitrijs Ledkovs wrote:
>>>
>>>> Because it's a new patch you get: .pc/ & in tree modifications & an
>>>> extra patch in debian/patches/.
>>>
>>> :(
>>>
>>
>> Will you sponsor this? =)
>
> Sure, if it builds locally for me. :)
>

I take it, it's still building ;-)
--
Regards,
Dmitrijs.

Revision history for this message
Barry Warsaw (barry) wrote :

On Jun 14, 2012, at 11:08 PM, Dmitrijs Ledkovs wrote:

>I take it, it's still building ;-)

chugga chugga :)

Preview Diff

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1=== modified file '.pc/applied-patches'
2--- .pc/applied-patches 2011-11-08 19:31:51 +0000
3+++ .pc/applied-patches 2012-06-14 20:29:21 +0000
4@@ -8,6 +8,6 @@
5 fix-ftbfs-gcc4.6.diff
6 fix-convolutiontest.diff
7 libpng15
8+fix-ftbfs-gcc4.7.diff
9 no-hdf5.diff
10 debian-changes-1.7.1+dfsg1-2ubuntu1
11-sizeof_ldbl_not_sizeof_dbl.diff
12
13=== removed file '.pc/debian-changes-1.7.1+dfsg1-2ubuntu1/include/vigra/numpy_array.hxx'
14--- .pc/debian-changes-1.7.1+dfsg1-2ubuntu1/include/vigra/numpy_array.hxx 2011-10-20 09:30:45 +0000
15+++ .pc/debian-changes-1.7.1+dfsg1-2ubuntu1/include/vigra/numpy_array.hxx 1970-01-01 00:00:00 +0000
16@@ -1,1922 +0,0 @@
17-/************************************************************************/
18-/* */
19-/* Copyright 2009 by Ullrich Koethe and Hans Meine */
20-/* */
21-/* This file is part of the VIGRA computer vision library. */
22-/* The VIGRA Website is */
23-/* http://hci.iwr.uni-heidelberg.de/vigra/ */
24-/* Please direct questions, bug reports, and contributions to */
25-/* ullrich.koethe@iwr.uni-heidelberg.de or */
26-/* vigra@informatik.uni-hamburg.de */
27-/* */
28-/* Permission is hereby granted, free of charge, to any person */
29-/* obtaining a copy of this software and associated documentation */
30-/* files (the "Software"), to deal in the Software without */
31-/* restriction, including without limitation the rights to use, */
32-/* copy, modify, merge, publish, distribute, sublicense, and/or */
33-/* sell copies of the Software, and to permit persons to whom the */
34-/* Software is furnished to do so, subject to the following */
35-/* conditions: */
36-/* */
37-/* The above copyright notice and this permission notice shall be */
38-/* included in all copies or substantial portions of the */
39-/* Software. */
40-/* */
41-/* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND */
42-/* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES */
43-/* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND */
44-/* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT */
45-/* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, */
46-/* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING */
47-/* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR */
48-/* OTHER DEALINGS IN THE SOFTWARE. */
49-/* */
50-/************************************************************************/
51-
52-#ifndef VIGRA_NUMPY_ARRAY_HXX
53-#define VIGRA_NUMPY_ARRAY_HXX
54-
55-#include <Python.h>
56-#include <iostream>
57-#include <algorithm>
58-#include <complex>
59-#include <string>
60-#include <sstream>
61-#include <map>
62-#include <vigra/multi_array.hxx>
63-#include <vigra/array_vector.hxx>
64-#include <vigra/sized_int.hxx>
65-#include <vigra/python_utility.hxx>
66-#include <numpy/arrayobject.h>
67-
68-int _import_array();
69-
70-namespace vigra {
71-
72-/********************************************************/
73-/* */
74-/* Singleband and Multiband */
75-/* */
76-/********************************************************/
77-
78-typedef float NumpyValueType;
79-
80-template <class T>
81-struct Singleband // the last array dimension is not to be interpreted as a channel dimension
82-{
83- typedef T value_type;
84-};
85-
86-template <class T>
87-struct Multiband // the last array dimension is a channel dimension
88-{
89- typedef T value_type;
90-};
91-
92-template<class T>
93-struct NumericTraits<Singleband<T> >
94-: public NumericTraits<T>
95-{};
96-
97-template<class T>
98-struct NumericTraits<Multiband<T> >
99-{
100- typedef Multiband<T> Type;
101-/*
102- typedef int Promote;
103- typedef unsigned int UnsignedPromote;
104- typedef double RealPromote;
105- typedef std::complex<RealPromote> ComplexPromote;
106-*/
107- typedef Type ValueType;
108-
109- typedef typename NumericTraits<T>::isIntegral isIntegral;
110- typedef VigraFalseType isScalar;
111- typedef typename NumericTraits<T>::isSigned isSigned;
112- typedef typename NumericTraits<T>::isSigned isOrdered;
113- typedef typename NumericTraits<T>::isSigned isComplex;
114-/*
115- static signed char zero() { return 0; }
116- static signed char one() { return 1; }
117- static signed char nonZero() { return 1; }
118- static signed char min() { return SCHAR_MIN; }
119- static signed char max() { return SCHAR_MAX; }
120-
121-#ifdef NO_INLINE_STATIC_CONST_DEFINITION
122- enum { minConst = SCHAR_MIN, maxConst = SCHAR_MIN };
123-#else
124- static const signed char minConst = SCHAR_MIN;
125- static const signed char maxConst = SCHAR_MIN;
126-#endif
127-
128- static Promote toPromote(signed char v) { return v; }
129- static RealPromote toRealPromote(signed char v) { return v; }
130- static signed char fromPromote(Promote v) {
131- return ((v < SCHAR_MIN) ? SCHAR_MIN : (v > SCHAR_MAX) ? SCHAR_MAX : v);
132- }
133- static signed char fromRealPromote(RealPromote v) {
134- return ((v < 0.0)
135- ? ((v < (RealPromote)SCHAR_MIN)
136- ? SCHAR_MIN
137- : static_cast<signed char>(v - 0.5))
138- : (v > (RealPromote)SCHAR_MAX)
139- ? SCHAR_MAX
140- : static_cast<signed char>(v + 0.5));
141- }
142-*/
143-};
144-
145-template <class T>
146-class MultibandVectorAccessor
147-{
148- MultiArrayIndex size_, stride_;
149-
150- public:
151- MultibandVectorAccessor(MultiArrayIndex size, MultiArrayIndex stride)
152- : size_(size),
153- stride_(stride)
154- {}
155-
156-
157- typedef Multiband<T> value_type;
158-
159- /** the vector's value_type
160- */
161- typedef T component_type;
162-
163- typedef VectorElementAccessor<MultibandVectorAccessor<T> > ElementAccessor;
164-
165- /** Read the component data at given vector index
166- at given iterator position
167- */
168- template <class ITERATOR>
169- component_type const & getComponent(ITERATOR const & i, int idx) const
170- {
171- return *(&*i+idx*stride_);
172- }
173-
174- /** Set the component data at given vector index
175- at given iterator position. The type <TT>V</TT> of the passed
176- in <TT>value</TT> is automatically converted to <TT>component_type</TT>.
177- In case of a conversion floating point -> intergral this includes rounding and clipping.
178- */
179- template <class V, class ITERATOR>
180- void setComponent(V const & value, ITERATOR const & i, int idx) const
181- {
182- *(&*i+idx*stride_) = detail::RequiresExplicitCast<component_type>::cast(value);
183- }
184-
185- /** Read the component data at given vector index
186- at an offset of given iterator position
187- */
188- template <class ITERATOR, class DIFFERENCE>
189- component_type const & getComponent(ITERATOR const & i, DIFFERENCE const & diff, int idx) const
190- {
191- return *(&i[diff]+idx*stride_);
192- }
193-
194- /** Set the component data at given vector index
195- at an offset of given iterator position. The type <TT>V</TT> of the passed
196- in <TT>value</TT> is automatically converted to <TT>component_type</TT>.
197- In case of a conversion floating point -> intergral this includes rounding and clipping.
198- */
199- template <class V, class ITERATOR, class DIFFERENCE>
200- void
201- setComponent(V const & value, ITERATOR const & i, DIFFERENCE const & diff, int idx) const
202- {
203- *(&i[diff]+idx*stride_) = detail::RequiresExplicitCast<component_type>::cast(value);
204- }
205-
206- template <class U>
207- MultiArrayIndex size(U) const
208- {
209- return size_;
210- }
211-};
212-
213-/********************************************************/
214-/* */
215-/* a few Python utilities */
216-/* */
217-/********************************************************/
218-
219-namespace detail {
220-
221-inline long spatialDimensions(PyObject * obj)
222-{
223- static python_ptr key(PyString_FromString("spatialDimensions"), python_ptr::keep_count);
224- python_ptr pres(PyObject_GetAttr(obj, key), python_ptr::keep_count);
225- long res = pres && PyInt_Check(pres)
226- ? PyInt_AsLong(pres)
227- : -1;
228- return res;
229-}
230-
231-/*
232- * The registry is used to optionally map specific C++ types to
233- * specific python sub-classes of numpy.ndarray (for example,
234- * MultiArray<2, Singleband<int> > to a user-defined Python class 'ScalarImage').
235- *
236- * One needs to use NUMPY_ARRAY_INITIALIZE_REGISTRY once in a python
237- * extension module using this technique, in order to actually provide
238- * the registry (this is done by vigranumpycmodule and will then be
239- * available for other modules, too). Alternatively,
240- * NUMPY_ARRAY_DUMMY_REGISTRY may be used to disable this feature
241- * completely. In both cases, the macro must not be enclosed by any
242- * namespace, so it is best put right at the beginning of the file
243- * (e.g. below the #includes).
244- */
245-
246-typedef std::map<std::string, std::pair<python_ptr, python_ptr> > ArrayTypeMap;
247-
248-VIGRA_EXPORT ArrayTypeMap * getArrayTypeMap();
249-
250-#define NUMPY_ARRAY_INITIALIZE_REGISTRY \
251- namespace vigra { namespace detail { \
252- ArrayTypeMap * getArrayTypeMap() \
253- { \
254- static ArrayTypeMap arrayTypeMap; \
255- return &arrayTypeMap; \
256- } \
257- }} // namespace vigra::detail
258-
259-#define NUMPY_ARRAY_DUMMY_REGISTRY \
260- namespace vigra { namespace detail { \
261- ArrayTypeMap * getArrayTypeMap() \
262- { \
263- return NULL; \
264- } \
265- }} // namespace vigra::detail
266-
267-inline
268-void registerPythonArrayType(std::string const & name, PyObject * obj, PyObject * typecheck)
269-{
270- ArrayTypeMap *types = getArrayTypeMap();
271- vigra_precondition(
272- types != NULL,
273- "registerPythonArrayType(): module was compiled without array type registry.");
274- vigra_precondition(
275- obj && PyType_Check(obj) && PyType_IsSubtype((PyTypeObject *)obj, &PyArray_Type),
276- "registerPythonArrayType(obj): obj is not a subtype of numpy.ndarray.");
277- if(typecheck && PyCallable_Check(typecheck))
278- (*types)[name] = std::make_pair(python_ptr(obj), python_ptr(typecheck));
279- else
280- (*types)[name] = std::make_pair(python_ptr(obj), python_ptr());
281-// std::cerr << "Registering " << ((PyTypeObject *)obj)->tp_name << " for " << name << "\n";
282-}
283-
284-inline
285-python_ptr getArrayTypeObject(std::string const & name, PyTypeObject * def = 0)
286-{
287- ArrayTypeMap *types = getArrayTypeMap();
288- if(!types)
289- // dummy registry -> handle like empty registry
290- return python_ptr((PyObject *)def);
291-
292- python_ptr res;
293- ArrayTypeMap::iterator i = types->find(name);
294- if(i != types->end())
295- res = i->second.first;
296- else
297- res = python_ptr((PyObject *)def);
298-// std::cerr << "Requested " << name << ", got " << ((PyTypeObject *)res.get())->tp_name << "\n";
299- return res;
300-}
301-
302-// there are two cases for the return:
303-// * if a typecheck function was registered, it is returned
304-// * a null pointer is returned if nothing was registered for either key, or if
305-// a type was registered without typecheck function
306-inline python_ptr
307-getArrayTypecheckFunction(std::string const & keyFull, std::string const & key)
308-{
309- python_ptr res;
310- ArrayTypeMap *types = getArrayTypeMap();
311- if(types)
312- {
313- ArrayTypeMap::iterator i = types->find(keyFull);
314- if(i == types->end())
315- i = types->find(key);
316- if(i != types->end())
317- res = i->second.second;
318- }
319- return res;
320-}
321-
322-inline bool
323-performCustomizedArrayTypecheck(PyObject * obj, std::string const & keyFull, std::string const & key)
324-{
325- if(obj == 0 || !PyArray_Check(obj))
326- return false;
327- python_ptr typecheck = getArrayTypecheckFunction(keyFull, key);
328- if(typecheck == 0)
329- return true; // no custom test registered
330- python_ptr args(PyTuple_Pack(1, obj), python_ptr::keep_count);
331- pythonToCppException(args);
332- python_ptr res(PyObject_Call(typecheck.get(), args.get(), 0), python_ptr::keep_count);
333- pythonToCppException(res);
334- vigra_precondition(PyBool_Check(res),
335- "NumpyArray conversion: registered typecheck function did not return a boolean.");
336- return (void*)res.get() == (void*)Py_True;
337-}
338-
339-inline
340-python_ptr constructNumpyArrayImpl(
341- PyTypeObject * type,
342- ArrayVector<npy_intp> const & shape, npy_intp *strides,
343- NPY_TYPES typeCode, bool init)
344-{
345- python_ptr array;
346-
347- if(strides == 0)
348- {
349- array = python_ptr(PyArray_New(type, shape.size(), (npy_intp *)shape.begin(), typeCode, 0, 0, 0, 1 /* Fortran order */, 0),
350- python_ptr::keep_count);
351- }
352- else
353- {
354- int N = shape.size();
355- ArrayVector<npy_intp> pshape(N);
356- for(int k=0; k<N; ++k)
357- pshape[strides[k]] = shape[k];
358-
359- array = python_ptr(PyArray_New(type, N, pshape.begin(), typeCode, 0, 0, 0, 1 /* Fortran order */, 0),
360- python_ptr::keep_count);
361- pythonToCppException(array);
362-
363- PyArray_Dims permute = { strides, N };
364- array = python_ptr(PyArray_Transpose((PyArrayObject*)array.get(), &permute), python_ptr::keep_count);
365- }
366- pythonToCppException(array);
367-
368- if(init)
369- PyArray_FILLWBYTE((PyArrayObject *)array.get(), 0);
370-
371- return array;
372-}
373-
374-// strideOrdering will be ignored unless order == "A"
375-// TODO: this function should receive some refactoring in order to make
376-// the rules clear from the code rather than from comments
377-inline python_ptr
378-constructNumpyArrayImpl(PyTypeObject * type, ArrayVector<npy_intp> const & shape,
379- unsigned int spatialDimensions, unsigned int channels,
380- NPY_TYPES typeCode, std::string order, bool init,
381- ArrayVector<npy_intp> strideOrdering = ArrayVector<npy_intp>())
382-{
383- // shape must have at least length spatialDimensions, but can also have a channel dimension
384- vigra_precondition(shape.size() == spatialDimensions || shape.size() == spatialDimensions + 1,
385- "constructNumpyArray(type, shape, ...): shape has wrong length.");
386-
387- // if strideOrdering is given, it must have at least length spatialDimensions,
388- // but can also have a channel dimension
389- vigra_precondition(strideOrdering.size() == 0 || strideOrdering.size() == spatialDimensions ||
390- strideOrdering.size() == spatialDimensions + 1,
391- "constructNumpyArray(type, ..., strideOrdering): strideOrdering has wrong length.");
392-
393- if(channels == 0) // if the requested number of channels is not given ...
394- {
395- // ... deduce it
396- if(shape.size() == spatialDimensions)
397- channels = 1;
398- else
399- channels = shape.back();
400- }
401- else
402- {
403- // otherwise, if the shape object also contains a channel dimension, they must be consistent
404- if(shape.size() > spatialDimensions)
405- vigra_precondition(channels == (unsigned int)shape[spatialDimensions],
406- "constructNumpyArray(type, ...): shape contradicts requested number of channels.");
407- }
408-
409- // if we have only one channel, no explicit channel dimension should be in the shape
410- unsigned int shapeSize = channels == 1
411- ? spatialDimensions
412- : spatialDimensions + 1;
413-
414- // create the shape object with optional channel dimension
415- ArrayVector<npy_intp> pshape(shapeSize);
416- std::copy(shape.begin(), shape.begin()+std::min(shape.size(), pshape.size()), pshape.begin());
417- if(shapeSize > spatialDimensions)
418- pshape[spatialDimensions] = channels;
419-
420- // order "A" means "preserve order" when an array is copied, and
421- // defaults to "V" when a new array is created without explicit strideOrdering
422- //
423- if(order == "A")
424- {
425- if(strideOrdering.size() == 0)
426- {
427- order = "V";
428- }
429- else if(strideOrdering.size() > shapeSize)
430- {
431- // make sure that strideOrdering length matches shape length
432- ArrayVector<npy_intp> pstride(strideOrdering.begin(), strideOrdering.begin()+shapeSize);
433-
434- // adjust the ordering when the channel dimension has been dropped because channel == 1
435- if(strideOrdering[shapeSize] == 0)
436- for(unsigned int k=0; k<shapeSize; ++k)
437- pstride[k] -= 1;
438- pstride.swap(strideOrdering);
439- }
440- else if(strideOrdering.size() < shapeSize)
441- {
442- // make sure that strideOrdering length matches shape length
443- ArrayVector<npy_intp> pstride(shapeSize);
444-
445- // adjust the ordering when the channel dimension has been dropped because channel == 1
446- for(unsigned int k=0; k<shapeSize-1; ++k)
447- pstride[k] = strideOrdering[k] + 1;
448- pstride[shapeSize-1] = 0;
449- pstride.swap(strideOrdering);
450- }
451- }
452-
453- // create the appropriate strideOrdering objects for the other memory orders
454- // (when strideOrdering already contained data, it is ignored because order != "A")
455- if(order == "C")
456- {
457- strideOrdering.resize(shapeSize);
458- for(unsigned int k=0; k<shapeSize; ++k)
459- strideOrdering[k] = shapeSize-1-k;
460- }
461- else if(order == "F" || (order == "V" && channels == 1))
462- {
463- strideOrdering.resize(shapeSize);
464- for(unsigned int k=0; k<shapeSize; ++k)
465- strideOrdering[k] = k;
466- }
467- else if(order == "V")
468- {
469- strideOrdering.resize(shapeSize);
470- for(unsigned int k=0; k<shapeSize-1; ++k)
471- strideOrdering[k] = k+1;
472- strideOrdering[shapeSize-1] = 0;
473- }
474-
475- return constructNumpyArrayImpl(type, pshape, strideOrdering.begin(), typeCode, init);
476-}
477-
478-template <class TINY_VECTOR>
479-inline
480-python_ptr constructNumpyArrayFromData(
481- std::string const & typeKeyFull,
482- std::string const & typeKey,
483- TINY_VECTOR const & shape, npy_intp *strides,
484- NPY_TYPES typeCode, void *data)
485-{
486- ArrayVector<npy_intp> pyShape(shape.begin(), shape.end());
487-
488- python_ptr type = detail::getArrayTypeObject(typeKeyFull);
489- if(type == 0)
490- type = detail::getArrayTypeObject(typeKey, &PyArray_Type);
491-
492- python_ptr array(PyArray_New((PyTypeObject *)type.ptr(), shape.size(), pyShape.begin(), typeCode, strides, data, 0, NPY_WRITEABLE, 0),
493- python_ptr::keep_count);
494- pythonToCppException(array);
495-
496- return array;
497-}
498-
499-
500-} // namespace detail
501-
502-/********************************************************/
503-/* */
504-/* NumpyArrayValuetypeTraits */
505-/* */
506-/********************************************************/
507-
508-template<class ValueType>
509-struct ERROR_NumpyArrayValuetypeTraits_not_specialized_for_ { };
510-
511-template<class ValueType>
512-struct NumpyArrayValuetypeTraits
513-{
514- static bool isValuetypeCompatible(PyArrayObject const * obj)
515- {
516- return ERROR_NumpyArrayValuetypeTraits_not_specialized_for_<ValueType>();
517- }
518-
519- static ERROR_NumpyArrayValuetypeTraits_not_specialized_for_<ValueType> typeCode;
520-
521- static std::string typeName()
522- {
523- return std::string("ERROR: NumpyArrayValuetypeTraits not specialized for this case");
524- }
525-
526- static std::string typeNameImpex()
527- {
528- return std::string("ERROR: NumpyArrayValuetypeTraits not specialized for this case");
529- }
530-
531- static PyObject * typeObject()
532- {
533- return (PyObject *)0;
534- }
535-};
536-
537-template<class ValueType>
538-ERROR_NumpyArrayValuetypeTraits_not_specialized_for_<ValueType> NumpyArrayValuetypeTraits<ValueType>::typeCode;
539-
540-#define VIGRA_NUMPY_VALUETYPE_TRAITS(type, typeID, numpyTypeName, impexTypeName) \
541-template <> \
542-struct NumpyArrayValuetypeTraits<type > \
543-{ \
544- static bool isValuetypeCompatible(PyArrayObject const * obj) /* obj must not be NULL */ \
545- { \
546- return PyArray_EquivTypenums(typeID, PyArray_DESCR((PyObject *)obj)->type_num) && \
547- PyArray_ITEMSIZE((PyObject *)obj) == sizeof(type); \
548- } \
549- \
550- static NPY_TYPES const typeCode = typeID; \
551- \
552- static std::string typeName() \
553- { \
554- return #numpyTypeName; \
555- } \
556- \
557- static std::string typeNameImpex() \
558- { \
559- return impexTypeName; \
560- } \
561- \
562- static PyObject * typeObject() \
563- { \
564- return PyArray_TypeObjectFromType(typeID); \
565- } \
566-};
567-
568-VIGRA_NUMPY_VALUETYPE_TRAITS(bool, NPY_BOOL, bool, "UINT8")
569-VIGRA_NUMPY_VALUETYPE_TRAITS(signed char, NPY_INT8, int8, "INT16")
570-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned char, NPY_UINT8, uint8, "UINT8")
571-VIGRA_NUMPY_VALUETYPE_TRAITS(short, NPY_INT16, int16, "INT16")
572-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned short, NPY_UINT16, uint16, "UINT16")
573-
574-#if VIGRA_BITSOF_LONG == 32
575-VIGRA_NUMPY_VALUETYPE_TRAITS(long, NPY_INT32, int32, "INT32")
576-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long, NPY_UINT32, uint32, "UINT32")
577-#elif VIGRA_BITSOF_LONG == 64
578-VIGRA_NUMPY_VALUETYPE_TRAITS(long, NPY_INT64, int64, "DOUBLE")
579-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long, NPY_UINT64, uint64, "DOUBLE")
580-#endif
581-
582-#if VIGRA_BITSOF_INT == 32
583-VIGRA_NUMPY_VALUETYPE_TRAITS(int, NPY_INT32, int32, "INT32")
584-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned int, NPY_UINT32, uint32, "UINT32")
585-#elif VIGRA_BITSOF_INT == 64
586-VIGRA_NUMPY_VALUETYPE_TRAITS(int, NPY_INT64, int64, "DOUBLE")
587-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned int, NPY_UINT64, uint64, "DOUBLE")
588-#endif
589-
590-#ifdef PY_LONG_LONG
591-# if VIGRA_BITSOF_LONG_LONG == 32
592-VIGRA_NUMPY_VALUETYPE_TRAITS(long long, NPY_INT32, int32, "INT32")
593-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long long, NPY_UINT32, uint32, "UINT32")
594-# elif VIGRA_BITSOF_LONG_LONG == 64
595-VIGRA_NUMPY_VALUETYPE_TRAITS(long long, NPY_INT64, int64, "DOUBLE")
596-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long long, NPY_UINT64, uint64, "DOUBLE")
597-# endif
598-#endif
599-
600-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_float32, NPY_FLOAT32, float32, "FLOAT")
601-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_float64, NPY_FLOAT64, float64, "DOUBLE")
602-#if NPY_SIZEOF_LONGDOUBLE != NPY_SIZEOF_DOUBLE
603-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_longdouble, NPY_LONGDOUBLE, longdouble, "")
604-#endif
605-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_cfloat, NPY_CFLOAT, complex64, "")
606-VIGRA_NUMPY_VALUETYPE_TRAITS(std::complex<npy_float>, NPY_CFLOAT, complex64, "")
607-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_cdouble, NPY_CDOUBLE, complex128, "")
608-VIGRA_NUMPY_VALUETYPE_TRAITS(std::complex<npy_double>, NPY_CDOUBLE, complex128, "")
609-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_clongdouble, NPY_CLONGDOUBLE, clongdouble, "")
610-#if NPY_SIZEOF_LONGDOUBLE != NPY_SIZEOF_DOUBLE
611-VIGRA_NUMPY_VALUETYPE_TRAITS(std::complex<npy_longdouble>, NPY_CLONGDOUBLE, clongdouble, "")
612-#endif
613-
614-#undef VIGRA_NUMPY_VALUETYPE_TRAITS
615-
616-/********************************************************/
617-/* */
618-/* NumpyArrayTraits */
619-/* */
620-/********************************************************/
621-
622-template <class U, int N>
623-bool stridesAreAscending(TinyVector<U, N> const & strides)
624-{
625- for(int k=1; k<N; ++k)
626- if(strides[k] < strides[k-1])
627- return false;
628- return true;
629-}
630-
631-template<unsigned int N, class T, class Stride>
632-struct NumpyArrayTraits;
633-
634-template<unsigned int N, class T>
635-struct NumpyArrayTraits<N, T, StridedArrayTag>
636-{
637- typedef T dtype;
638- typedef T value_type;
639- typedef NumpyArrayValuetypeTraits<T> ValuetypeTraits;
640- static NPY_TYPES const typeCode = ValuetypeTraits::typeCode;
641-
642- enum { spatialDimensions = N, channels = 1 };
643-
644- static bool isArray(PyObject * obj)
645- {
646- return obj && PyArray_Check(obj);
647- }
648-
649- static bool isClassCompatible(PyObject * obj)
650- {
651- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
652- }
653-
654- static bool isValuetypeCompatible(PyArrayObject * obj) /* obj must not be NULL */
655- {
656- return ValuetypeTraits::isValuetypeCompatible(obj);
657- }
658-
659- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
660- {
661- return PyArray_NDIM((PyObject *)obj) == N-1 ||
662- PyArray_NDIM((PyObject *)obj) == N ||
663- (PyArray_NDIM((PyObject *)obj) == N+1 && PyArray_DIM((PyObject *)obj, N) == 1);
664- }
665-
666- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
667- {
668- return ValuetypeTraits::isValuetypeCompatible(obj) &&
669- isShapeCompatible(obj);
670- }
671-
672- template <class U>
673- static python_ptr constructor(TinyVector<U, N> const & shape,
674- T *data, TinyVector<U, N> const & stride)
675- {
676- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
677- return detail::constructNumpyArrayFromData(typeKeyFull(), typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
678- }
679-
680- static std::string typeKey()
681- {
682- static std::string key = std::string("NumpyArray<") + asString(N) + ", *>";
683- return key;
684- }
685-
686- static std::string typeKeyFull()
687- {
688- static std::string key = std::string("NumpyArray<") + asString(N) + ", " +
689- ValuetypeTraits::typeName() + ", StridedArrayTag>";
690- return key;
691- }
692-};
693-
694-/********************************************************/
695-
696-template<unsigned int N, class T>
697-struct NumpyArrayTraits<N, T, UnstridedArrayTag>
698-: public NumpyArrayTraits<N, T, StridedArrayTag>
699-{
700- typedef NumpyArrayTraits<N, T, StridedArrayTag> BaseType;
701- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
702-
703- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
704- {
705- return BaseType::isShapeCompatible(obj) &&
706- PyArray_STRIDES((PyObject *)obj)[0] == PyArray_ITEMSIZE((PyObject *)obj);
707- }
708-
709- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
710- {
711- return BaseType::isValuetypeCompatible(obj) &&
712- isShapeCompatible(obj);
713- }
714-
715- template <class U>
716- static python_ptr constructor(TinyVector<U, N> const & shape,
717- T *data, TinyVector<U, N> const & stride)
718- {
719- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
720- return detail::constructNumpyArrayFromData(typeKeyFull(), BaseType::typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
721- }
722-
723- static std::string typeKeyFull()
724- {
725- static std::string key = std::string("NumpyArray<") + asString(N) + ", " +
726- ValuetypeTraits::typeName() + ", UnstridedArrayTag>";
727- return key;
728- }
729-};
730-
731-/********************************************************/
732-
733-template<unsigned int N, class T>
734-struct NumpyArrayTraits<N, Singleband<T>, StridedArrayTag>
735-: public NumpyArrayTraits<N, T, StridedArrayTag>
736-{
737- typedef NumpyArrayTraits<N, T, StridedArrayTag> BaseType;
738- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
739-
740- static bool isClassCompatible(PyObject * obj)
741- {
742- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
743- }
744-
745- template <class U>
746- static python_ptr constructor(TinyVector<U, N> const & shape,
747- T *data, TinyVector<U, N> const & stride)
748- {
749- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
750- return detail::constructNumpyArrayFromData(typeKeyFull(), typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
751- }
752-
753- static std::string typeKey()
754- {
755- static std::string key = std::string("NumpyArray<") + asString(N) + ", Singleband<*> >";
756- return key;
757- }
758-
759- static std::string typeKeyFull()
760- {
761- static std::string key = std::string("NumpyArray<") + asString(N) + ", Singleband<" +
762- ValuetypeTraits::typeName() + ">, StridedArrayTag>";
763- return key;
764- }
765-};
766-
767-/********************************************************/
768-
769-template<unsigned int N, class T>
770-struct NumpyArrayTraits<N, Singleband<T>, UnstridedArrayTag>
771-: public NumpyArrayTraits<N, Singleband<T>, StridedArrayTag>
772-{
773- typedef NumpyArrayTraits<N, T, UnstridedArrayTag> UnstridedTraits;
774- typedef NumpyArrayTraits<N, Singleband<T>, StridedArrayTag> BaseType;
775- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
776-
777- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
778- {
779- return UnstridedTraits::isShapeCompatible(obj);
780- }
781-
782- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
783- {
784- return UnstridedTraits::isPropertyCompatible(obj);
785- }
786-
787- template <class U>
788- static python_ptr constructor(TinyVector<U, N> const & shape,
789- T *data, TinyVector<U, N> const & stride)
790- {
791- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
792- return detail::constructNumpyArrayFromData(typeKeyFull(), BaseType::typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
793- }
794-
795- static std::string typeKeyFull()
796- {
797- static std::string key = std::string("NumpyArray<") + asString(N) + ", Singleband<" +
798- ValuetypeTraits::typeName() + ">, UnstridedArrayTag>";
799- return key;
800- }
801-};
802-
803-/********************************************************/
804-
805-template<unsigned int N, class T>
806-struct NumpyArrayTraits<N, Multiband<T>, StridedArrayTag>
807-: public NumpyArrayTraits<N, T, StridedArrayTag>
808-{
809- typedef NumpyArrayTraits<N, T, StridedArrayTag> BaseType;
810- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
811-
812- enum { spatialDimensions = N-1, channels = 0 };
813-
814- static bool isClassCompatible(PyObject * obj)
815- {
816- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
817- }
818-
819- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
820- {
821- return PyArray_NDIM(obj) == N || PyArray_NDIM(obj) == N-1;
822- }
823-
824- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
825- {
826- return ValuetypeTraits::isValuetypeCompatible(obj) &&
827- isShapeCompatible(obj);
828- }
829-
830- template <class U>
831- static python_ptr constructor(TinyVector<U, N> const & shape,
832- T *data, TinyVector<U, N> const & stride)
833- {
834- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
835- return detail::constructNumpyArrayFromData(typeKeyFull(), typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
836- }
837-
838- static std::string typeKey()
839- {
840- static std::string key = std::string("NumpyArray<") + asString(N) + ", Multiband<*> >";
841- return key;
842- }
843-
844- static std::string typeKeyFull()
845- {
846- static std::string key = std::string("NumpyArray<") + asString(N) + ", Multiband<" +
847- ValuetypeTraits::typeName() + ">, StridedArrayTag>";
848- return key;
849- }
850-};
851-
852-/********************************************************/
853-
854-template<unsigned int N, class T>
855-struct NumpyArrayTraits<N, Multiband<T>, UnstridedArrayTag>
856-: public NumpyArrayTraits<N, Multiband<T>, StridedArrayTag>
857-{
858- typedef NumpyArrayTraits<N, Multiband<T>, StridedArrayTag> BaseType;
859- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
860-
861- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
862- {
863- return BaseType::isShapeCompatible(obj) &&
864- PyArray_STRIDES((PyObject *)obj)[0] == PyArray_ITEMSIZE((PyObject *)obj);
865- }
866-
867- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
868- {
869- return BaseType::isValuetypeCompatible(obj) &&
870- isShapeCompatible(obj);
871- }
872-
873- template <class U>
874- static python_ptr constructor(TinyVector<U, N> const & shape,
875- T *data, TinyVector<U, N> const & stride)
876- {
877- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
878- return detail::constructNumpyArrayFromData(typeKeyFull(), BaseType::typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
879- }
880-
881- static std::string typeKeyFull()
882- {
883- static std::string key = std::string("NumpyArray<") + asString(N) + ", Multiband<" +
884- ValuetypeTraits::typeName() + ">, UnstridedArrayTag>";
885- return key;
886- }
887-};
888-
889-/********************************************************/
890-
891-template<unsigned int N, int M, class T>
892-struct NumpyArrayTraits<N, TinyVector<T, M>, StridedArrayTag>
893-{
894- typedef T dtype;
895- typedef TinyVector<T, M> value_type;
896- typedef NumpyArrayValuetypeTraits<T> ValuetypeTraits;
897- static NPY_TYPES const typeCode = ValuetypeTraits::typeCode;
898-
899- enum { spatialDimensions = N, channels = M };
900-
901- static bool isArray(PyObject * obj)
902- {
903- return obj && PyArray_Check(obj);
904- }
905-
906- static bool isClassCompatible(PyObject * obj)
907- {
908- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
909- }
910-
911- static bool isValuetypeCompatible(PyArrayObject * obj) /* obj must not be NULL */
912- {
913- return ValuetypeTraits::isValuetypeCompatible(obj);
914- }
915-
916- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
917- {
918- return PyArray_NDIM((PyObject *)obj) == N+1 &&
919- PyArray_DIM((PyObject *)obj, N) == M &&
920- PyArray_STRIDES((PyObject *)obj)[N] == PyArray_ITEMSIZE((PyObject *)obj);
921- }
922-
923- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
924- {
925- return ValuetypeTraits::isValuetypeCompatible(obj) &&
926- isShapeCompatible(obj);
927- }
928-
929- template <class U>
930- static python_ptr constructor(TinyVector<U, N> const & shape,
931- T *data, TinyVector<U, N> const & stride)
932- {
933- TinyVector<npy_intp, N+1> npyShape;
934- std::copy(shape.begin(), shape.end(), npyShape.begin());
935- npyShape[N] = M;
936-
937- TinyVector<npy_intp, N+1> npyStride;
938- std::transform(
939- stride.begin(), stride.end(), npyStride.begin(),
940- std::bind2nd(std::multiplies<npy_intp>(), sizeof(value_type)));
941- npyStride[N] = sizeof(T);
942-
943- return detail::constructNumpyArrayFromData(
944- typeKeyFull(), typeKey(), npyShape,
945- npyStride.begin(), ValuetypeTraits::typeCode, data);
946- }
947-
948- static std::string typeKey()
949- {
950- static std::string key = std::string("NumpyArray<") + asString(N) + ", TinyVector<*, " + asString(M) + "> >";
951- return key;
952- }
953-
954- static std::string typeKeyFull()
955- {
956- static std::string key = std::string("NumpyArray<") + asString(N) +
957- ", TinyVector<" + ValuetypeTraits::typeName() + ", " + asString(M) + ">, StridedArrayTag>";
958- return key;
959- }
960-};
961-
962-/********************************************************/
963-
964-template<unsigned int N, int M, class T>
965-struct NumpyArrayTraits<N, TinyVector<T, M>, UnstridedArrayTag>
966-: public NumpyArrayTraits<N, TinyVector<T, M>, StridedArrayTag>
967-{
968- typedef NumpyArrayTraits<N, TinyVector<T, M>, StridedArrayTag> BaseType;
969- typedef typename BaseType::value_type value_type;
970- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
971-
972- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
973- {
974- return BaseType::isShapeCompatible(obj) &&
975- PyArray_STRIDES((PyObject *)obj)[0] == sizeof(TinyVector<T, M>);
976- }
977-
978- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
979- {
980- return BaseType::isValuetypeCompatible(obj) &&
981- isShapeCompatible(obj);
982- }
983-
984- template <class U>
985- static python_ptr constructor(TinyVector<U, N> const & shape,
986- T *data, TinyVector<U, N> const & stride)
987- {
988- TinyVector<npy_intp, N+1> npyShape;
989- std::copy(shape.begin(), shape.end(), npyShape.begin());
990- npyShape[N] = M;
991-
992- TinyVector<npy_intp, N+1> npyStride;
993- std::transform(
994- stride.begin(), stride.end(), npyStride.begin(),
995- std::bind2nd(std::multiplies<npy_intp>(), sizeof(value_type)));
996- npyStride[N] = sizeof(T);
997-
998- return detail::constructNumpyArrayFromData(
999- typeKeyFull(), BaseType::typeKey(), npyShape,
1000- npyStride.begin(), ValuetypeTraits::typeCode, data);
1001- }
1002-
1003- static std::string typeKeyFull()
1004- {
1005- static std::string key = std::string("NumpyArray<") + asString(N) +
1006- ", TinyVector<" + ValuetypeTraits::typeName() + ", " + asString(M) + ">, UnstridedArrayTag>";
1007- return key;
1008- }
1009-};
1010-
1011-/********************************************************/
1012-
1013-template<unsigned int N, class T>
1014-struct NumpyArrayTraits<N, RGBValue<T>, StridedArrayTag>
1015-: public NumpyArrayTraits<N, TinyVector<T, 3>, StridedArrayTag>
1016-{
1017- typedef T dtype;
1018- typedef RGBValue<T> value_type;
1019- typedef NumpyArrayValuetypeTraits<T> ValuetypeTraits;
1020-
1021- static bool isClassCompatible(PyObject * obj)
1022- {
1023- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
1024- }
1025-
1026- template <class U>
1027- static python_ptr constructor(TinyVector<U, N> const & shape,
1028- T *data, TinyVector<U, N> const & stride)
1029- {
1030- TinyVector<npy_intp, N+1> npyShape;
1031- std::copy(shape.begin(), shape.end(), npyShape.begin());
1032- npyShape[N] = 3;
1033-
1034- TinyVector<npy_intp, N+1> npyStride;
1035- std::transform(
1036- stride.begin(), stride.end(), npyStride.begin(),
1037- std::bind2nd(std::multiplies<npy_intp>(), sizeof(value_type)));
1038- npyStride[N] = sizeof(T);
1039-
1040- return detail::constructNumpyArrayFromData(
1041- typeKeyFull(), typeKey(), npyShape,
1042- npyStride.begin(), ValuetypeTraits::typeCode, data);
1043- }
1044-
1045- static std::string typeKey()
1046- {
1047- static std::string key = std::string("NumpyArray<") + asString(N) + ", RGBValue<*> >";
1048- return key;
1049- }
1050-
1051- static std::string typeKeyFull()
1052- {
1053- static std::string key = std::string("NumpyArray<") + asString(N) +
1054- ", RGBValue<" + ValuetypeTraits::typeName() + ">, StridedArrayTag>";
1055- return key;
1056- }
1057-};
1058-
1059-/********************************************************/
1060-
1061-template<unsigned int N, class T>
1062-struct NumpyArrayTraits<N, RGBValue<T>, UnstridedArrayTag>
1063-: public NumpyArrayTraits<N, RGBValue<T>, StridedArrayTag>
1064-{
1065- typedef NumpyArrayTraits<N, TinyVector<T, 3>, UnstridedArrayTag> UnstridedTraits;
1066- typedef NumpyArrayTraits<N, RGBValue<T>, StridedArrayTag> BaseType;
1067- typedef typename BaseType::value_type value_type;
1068- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
1069-
1070- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
1071- {
1072- return UnstridedTraits::isShapeCompatible(obj);
1073- }
1074-
1075- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
1076- {
1077- return UnstridedTraits::isPropertyCompatible(obj);
1078- }
1079-
1080- template <class U>
1081- static python_ptr constructor(TinyVector<U, N> const & shape,
1082- T *data, TinyVector<U, N> const & stride)
1083- {
1084- TinyVector<npy_intp, N+1> npyShape;
1085- std::copy(shape.begin(), shape.end(), npyShape.begin());
1086- npyShape[N] = 3;
1087-
1088- TinyVector<npy_intp, N+1> npyStride;
1089- std::transform(
1090- stride.begin(), stride.end(), npyStride.begin(),
1091- std::bind2nd(std::multiplies<npy_intp>(), sizeof(value_type)));
1092- npyStride[N] = sizeof(T);
1093-
1094- return detail::constructNumpyArrayFromData(
1095- typeKeyFull(), BaseType::typeKey(), npyShape,
1096- npyStride.begin(), ValuetypeTraits::typeCode, data);
1097- }
1098-
1099- static std::string typeKeyFull()
1100- {
1101- static std::string key = std::string("NumpyArray<") + asString(N) +
1102- ", RGBValue<" + ValuetypeTraits::typeName() + ">, UnstridedArrayTag>";
1103- return key;
1104- }
1105-};
1106-
1107-/********************************************************/
1108-/* */
1109-/* NumpyAnyArray */
1110-/* */
1111-/********************************************************/
1112-
1113-/** Wrapper class for a Python array.
1114-
1115- This class stores a reference-counted pointer to an Python numpy array object,
1116- i.e. an object where <tt>PyArray_Check(object)</tt> returns true (in Python, the
1117- object is then a subclass of <tt>numpy.ndarray</tt>). This class is mainly used
1118- as a smart pointer to these arrays, but some basic access and conversion functions
1119- are also provided.
1120-
1121- <b>\#include</b> \<<a href="numpy__array_8hxx-source.html">vigra/numpy_array.hxx</a>\><br>
1122- Namespace: vigra
1123-*/
1124-class NumpyAnyArray
1125-{
1126- protected:
1127- python_ptr pyArray_;
1128-
1129- // We want to apply broadcasting to the channel dimension.
1130- // Since only leading dimensions can be added during numpy
1131- // broadcasting, we permute the array accordingly.
1132- NumpyAnyArray permuteChannelsToFront() const
1133- {
1134- MultiArrayIndex M = ndim();
1135- ArrayVector<npy_intp> permutation(M);
1136- for(int k=0; k<M; ++k)
1137- permutation[k] = M-1-k;
1138- // explicit cast to int is neede here to avoid gcc c++0x compilation
1139- // error: narrowing conversion of ‘M’ from ‘vigra::MultiArrayIndex’
1140- // to ‘int’ inside { }
1141- // int overflow should not occur here because PyArray_NDIM returns
1142- // an integer which is converted to long in NumpyAnyArray::ndim()
1143- PyArray_Dims permute = { permutation.begin(), (int) M };
1144- python_ptr array(PyArray_Transpose(pyArray(), &permute), python_ptr::keep_count);
1145- pythonToCppException(array);
1146- return NumpyAnyArray(array.ptr());
1147- }
1148-
1149- public:
1150-
1151- /// difference type
1152- typedef ArrayVector<npy_intp> difference_type;
1153-
1154- /**
1155- Construct from a Python object. If \a obj is NULL, or is not a subclass
1156- of numpy.ndarray, the resulting NumpyAnyArray will have no data (i.e.
1157- hasData() returns false). Otherwise, it creates a new reference to the array
1158- \a obj, unless \a createCopy is true, where a new array is created by calling
1159- the C-equivalent of obj->copy().
1160- */
1161- explicit NumpyAnyArray(PyObject * obj = 0, bool createCopy = false, PyTypeObject * type = 0)
1162- {
1163- if(obj == 0)
1164- return;
1165- vigra_precondition(type == 0 || PyType_IsSubtype(type, &PyArray_Type),
1166- "NumpyAnyArray(obj, createCopy, type): type must be numpy.ndarray or a subclass thereof.");
1167- if(createCopy)
1168- makeCopy(obj, type);
1169- else
1170- vigra_precondition(makeReference(obj, type), "NumpyAnyArray(obj): obj isn't a numpy array.");
1171- }
1172-
1173- /**
1174- Copy constructor. By default, it creates a new reference to the array
1175- \a other. When \a createCopy is true, a new array is created by calling
1176- the C-equivalent of other.copy().
1177- */
1178- NumpyAnyArray(NumpyAnyArray const & other, bool createCopy = false, PyTypeObject * type = 0)
1179- {
1180- if(!other.hasData())
1181- return;
1182- vigra_precondition(type == 0 || PyType_IsSubtype(type, &PyArray_Type),
1183- "NumpyAnyArray(obj, createCopy, type): type must be numpy.ndarray or a subclass thereof.");
1184- if(createCopy)
1185- makeCopy(other.pyObject(), type);
1186- else
1187- makeReference(other.pyObject(), type);
1188- }
1189-
1190- // auto-generated destructor is ok
1191-
1192- /**
1193- * Assignment operator. If this is already a view with data
1194- * (i.e. hasData() is true) and the shapes match, the RHS
1195- * array contents are copied via the C-equivalent of
1196- * 'self[...] = other[...]'. If the shapes don't matched,
1197- * broadcasting is tried on the trailing (i.e. channel)
1198- * dimension.
1199- * If the LHS is an empty view, assignment is identical to
1200- * makeReference(other.pyObject()).
1201- */
1202- NumpyAnyArray & operator=(NumpyAnyArray const & other)
1203- {
1204- if(hasData())
1205- {
1206- vigra_precondition(other.hasData(),
1207- "NumpyArray::operator=(): Cannot assign from empty array.");
1208- if(PyArray_CopyInto(permuteChannelsToFront().pyArray(), other.permuteChannelsToFront().pyArray()) == -1)
1209- pythonToCppException(0);
1210- }
1211- else
1212- {
1213- pyArray_ = other.pyArray_;
1214- }
1215- return *this;
1216- }
1217-
1218- /**
1219- Returns the number of dimensions of this array, or 0 if
1220- hasData() is false.
1221- */
1222- MultiArrayIndex ndim() const
1223- {
1224- if(hasData())
1225- return PyArray_NDIM(pyObject());
1226- return 0;
1227- }
1228-
1229- /**
1230- Returns the number of spatial dimensions of this array, or 0 if
1231- hasData() is false. If the enclosed Python array does not define
1232- the attribute spatialDimensions, ndim() is returned.
1233- */
1234- MultiArrayIndex spatialDimensions() const
1235- {
1236- if(!hasData())
1237- return 0;
1238- MultiArrayIndex s = detail::spatialDimensions(pyObject());
1239- if(s == -1)
1240- s = ndim();
1241- return s;
1242- }
1243-
1244- /**
1245- Returns the shape of this array. The size of
1246- the returned shape equals ndim().
1247- */
1248- difference_type shape() const
1249- {
1250- if(hasData())
1251- return difference_type(PyArray_DIMS(pyObject()), PyArray_DIMS(pyObject()) + ndim());
1252- return difference_type();
1253- }
1254-
1255- /** Compute the ordering of the strides of this array.
1256- The result is describes the current permutation of the axes relative
1257- to an ascending stride order.
1258- */
1259- difference_type strideOrdering() const
1260- {
1261- if(!hasData())
1262- return difference_type();
1263- MultiArrayIndex N = ndim();
1264- difference_type stride(PyArray_STRIDES(pyObject()), PyArray_STRIDES(pyObject()) + N),
1265- permutation(N);
1266- for(MultiArrayIndex k=0; k<N; ++k)
1267- permutation[k] = k;
1268- for(MultiArrayIndex k=0; k<N-1; ++k)
1269- {
1270- MultiArrayIndex smallest = k;
1271- for(MultiArrayIndex j=k+1; j<N; ++j)
1272- {
1273- if(stride[j] < stride[smallest])
1274- smallest = j;
1275- }
1276- if(smallest != k)
1277- {
1278- std::swap(stride[k], stride[smallest]);
1279- std::swap(permutation[k], permutation[smallest]);
1280- }
1281- }
1282- difference_type ordering(N);
1283- for(MultiArrayIndex k=0; k<N; ++k)
1284- ordering[permutation[k]] = k;
1285- return ordering;
1286- }
1287-
1288- /**
1289- Returns the value type of the elements in this array, or -1
1290- when hasData() is false.
1291- */
1292- int dtype() const
1293- {
1294- if(hasData())
1295- return PyArray_DESCR(pyObject())->type_num;
1296- return -1;
1297- }
1298-
1299- /**
1300- * Return a borrowed reference to the internal PyArrayObject.
1301- */
1302- PyArrayObject * pyArray() const
1303- {
1304- return (PyArrayObject *)pyArray_.get();
1305- }
1306-
1307- /**
1308- * Return a borrowed reference to the internal PyArrayObject
1309- * (see pyArray()), cast to PyObject for your convenience.
1310- */
1311- PyObject * pyObject() const
1312- {
1313- return pyArray_.get();
1314- }
1315-
1316- /**
1317- Reset the NumpyAnyArray to the given object. If \a obj is a numpy array object,
1318- a new reference to that array is created, and the function returns
1319- true. Otherwise, it returns false and the NumpyAnyArray remains unchanged.
1320- If \a type is given, the new reference will be a view with that type, provided
1321- that \a type is a numpy ndarray or a subclass thereof. Otherwise, an
1322- exception is thrown.
1323- */
1324- bool makeReference(PyObject * obj, PyTypeObject * type = 0)
1325- {
1326- if(obj == 0 || !PyArray_Check(obj))
1327- return false;
1328- if(type != 0)
1329- {
1330- vigra_precondition(PyType_IsSubtype(type, &PyArray_Type) != 0,
1331- "NumpyAnyArray::makeReference(obj, type): type must be numpy.ndarray or a subclass thereof.");
1332- obj = PyArray_View((PyArrayObject*)obj, 0, type);
1333- pythonToCppException(obj);
1334- }
1335- pyArray_.reset(obj);
1336- return true;
1337- }
1338-
1339- /**
1340- Create a copy of the given array object. If \a obj is a numpy array object,
1341- a copy is created via the C-equivalent of 'obj->copy()'. If
1342- this call fails, or obj was not an array, an exception is thrown
1343- and the NumpyAnyArray remains unchanged.
1344- */
1345- void makeCopy(PyObject * obj, PyTypeObject * type = 0)
1346- {
1347- vigra_precondition(obj && PyArray_Check(obj),
1348- "NumpyAnyArray::makeCopy(obj): obj is not an array.");
1349- vigra_precondition(type == 0 || PyType_IsSubtype(type, &PyArray_Type),
1350- "NumpyAnyArray::makeCopy(obj, type): type must be numpy.ndarray or a subclass thereof.");
1351- python_ptr array(PyArray_NewCopy((PyArrayObject*)obj, NPY_ANYORDER), python_ptr::keep_count);
1352- pythonToCppException(array);
1353- makeReference(array, type);
1354- }
1355-
1356- /**
1357- Check whether this NumpyAnyArray actually points to a Python array.
1358- */
1359- bool hasData() const
1360- {
1361- return pyArray_ != 0;
1362- }
1363-};
1364-
1365-/********************************************************/
1366-/* */
1367-/* NumpyArray */
1368-/* */
1369-/********************************************************/
1370-
1371-/** Provide the MultiArrayView interface for a Python array.
1372-
1373- This class inherits from both \ref vigra::MultiArrayView and \ref vigra::NumpyAnyArray
1374- in order to support easy and save application of VIGRA functions to Python arrays.
1375-
1376- <b>\#include</b> \<<a href="numpy__array_8hxx-source.html">vigra/numpy_array.hxx</a>\><br>
1377- Namespace: vigra
1378-*/
1379-template <unsigned int N, class T, class Stride = StridedArrayTag>
1380-class NumpyArray
1381-: public MultiArrayView<N, typename NumpyArrayTraits<N, T, Stride>::value_type, Stride>,
1382- public NumpyAnyArray
1383-{
1384- public:
1385- typedef NumpyArrayTraits<N, T, Stride> ArrayTraits;
1386- typedef typename ArrayTraits::dtype dtype;
1387- typedef T pseudo_value_type;
1388-
1389- static NPY_TYPES const typeCode = ArrayTraits::typeCode;
1390-
1391- /** the view type associated with this array.
1392- */
1393- typedef MultiArrayView<N, typename ArrayTraits::value_type, Stride> view_type;
1394-
1395- enum { actual_dimension = view_type::actual_dimension };
1396-
1397- /** the array's value type
1398- */
1399- typedef typename view_type::value_type value_type;
1400-
1401- /** pointer type
1402- */
1403- typedef typename view_type::pointer pointer;
1404-
1405- /** const pointer type
1406- */
1407- typedef typename view_type::const_pointer const_pointer;
1408-
1409- /** reference type (result of operator[])
1410- */
1411- typedef typename view_type::reference reference;
1412-
1413- /** const reference type (result of operator[] const)
1414- */
1415- typedef typename view_type::const_reference const_reference;
1416-
1417- /** size type
1418- */
1419- typedef typename view_type::size_type size_type;
1420-
1421- /** difference type (used for multi-dimensional offsets and indices)
1422- */
1423- typedef typename view_type::difference_type difference_type;
1424-
1425- /** difference and index type for a single dimension
1426- */
1427- typedef typename view_type::difference_type_1 difference_type_1;
1428-
1429- /** traverser type
1430- */
1431- typedef typename view_type::traverser traverser;
1432-
1433- /** traverser type to const data
1434- */
1435- typedef typename view_type::const_traverser const_traverser;
1436-
1437- /** sequential (random access) iterator type
1438- */
1439- typedef value_type * iterator;
1440-
1441- /** sequential (random access) const iterator type
1442- */
1443- typedef value_type * const_iterator;
1444-
1445- using view_type::shape; // resolve ambiguity of multiple inheritance
1446- using view_type::hasData; // resolve ambiguity of multiple inheritance
1447- using view_type::strideOrdering; // resolve ambiguity of multiple inheritance
1448-
1449- protected:
1450-
1451- // this function assumes that pyArray_ has already been set, and compatibility been checked
1452- void setupArrayView();
1453-
1454- static python_ptr getArrayTypeObject()
1455- {
1456- python_ptr type = detail::getArrayTypeObject(ArrayTraits::typeKeyFull());
1457- if(type == 0)
1458- type = detail::getArrayTypeObject(ArrayTraits::typeKey(), &PyArray_Type);
1459- return type;
1460- }
1461-
1462- static python_ptr init(difference_type const & shape, bool init = true)
1463- {
1464- ArrayVector<npy_intp> pshape(shape.begin(), shape.end());
1465- return detail::constructNumpyArrayImpl((PyTypeObject *)getArrayTypeObject().ptr(), pshape,
1466- ArrayTraits::spatialDimensions, ArrayTraits::channels,
1467- typeCode, "V", init);
1468- }
1469-
1470- static python_ptr init(difference_type const & shape, difference_type const & strideOrdering, bool init = true)
1471- {
1472- ArrayVector<npy_intp> pshape(shape.begin(), shape.end()),
1473- pstrideOrdering(strideOrdering.begin(), strideOrdering.end());
1474- return detail::constructNumpyArrayImpl((PyTypeObject *)getArrayTypeObject().ptr(), pshape,
1475- ArrayTraits::spatialDimensions, ArrayTraits::channels,
1476- typeCode, "A", init, pstrideOrdering);
1477- }
1478-
1479- public:
1480-
1481- using view_type::init;
1482-
1483- /**
1484- * Construct from a given PyObject pointer. When the given
1485- * python object is NULL, the internal python array will be
1486- * NULL and hasData() will return false.
1487- *
1488- * Otherwise, the function attempts to create a
1489- * new reference to the given Python object, unless
1490- * copying is forced by setting \a createCopy to true.
1491- * If either of this fails, the function throws an exception.
1492- * This will not happen if isStrictlyCompatible(obj) (in case
1493- * of creating a new reference) or isCopyCompatible(obj)
1494- * (in case of copying) have returned true beforehand.
1495- */
1496- explicit NumpyArray(PyObject *obj = 0, bool createCopy = false)
1497- {
1498- if(obj == 0)
1499- return;
1500- if(createCopy)
1501- makeCopy(obj);
1502- else
1503- vigra_precondition(makeReference(obj),
1504- "NumpyArray(obj): Cannot construct from incompatible array.");
1505- }
1506-
1507- /**
1508- * Copy constructor; does not copy the memory, but creates a
1509- * new reference to the same underlying python object, unless
1510- * a copy is forced by setting \a createCopy to true.
1511- * (If the source object has no data, this one will have
1512- * no data, too.)
1513- */
1514- NumpyArray(const NumpyArray &other, bool createCopy = false) :
1515- MultiArrayView<N, typename NumpyArrayTraits<N, T, Stride>::value_type, Stride>(other),
1516- NumpyAnyArray(other, createCopy)
1517- {
1518- if(!other.hasData())
1519- return;
1520- if(createCopy)
1521- makeCopy(other.pyObject());
1522- else
1523- makeReferenceUnchecked(other.pyObject());
1524- }
1525-
1526- /**
1527- * Allocate new memory and copy data from a MultiArrayView.
1528- */
1529- explicit NumpyArray(const view_type &other)
1530- {
1531- if(!other.hasData())
1532- return;
1533- vigra_postcondition(makeReference(init(other.shape(), false)),
1534- "NumpyArray(view_type): Python constructor did not produce a compatible array.");
1535- static_cast<view_type &>(*this) = other;
1536- }
1537-
1538- /**
1539- * Construct a new array object, allocating an internal python
1540- * ndarray of the given shape (in fortran order), initialized
1541- * with zeros.
1542- *
1543- * An exception is thrown when construction fails.
1544- */
1545- explicit NumpyArray(difference_type const & shape)
1546- {
1547- vigra_postcondition(makeReference(init(shape)),
1548- "NumpyArray(shape): Python constructor did not produce a compatible array.");
1549- }
1550-
1551- /**
1552- * Construct a new array object, allocating an internal python
1553- * ndarray of the given shape and given stride ordering, initialized
1554- * with zeros.
1555- *
1556- * An exception is thrown when construction fails.
1557- */
1558- NumpyArray(difference_type const & shape, difference_type const & strideOrdering)
1559- {
1560- vigra_postcondition(makeReference(init(shape, strideOrdering)),
1561- "NumpyArray(shape): Python constructor did not produce a compatible array.");
1562- }
1563-
1564- /**
1565- * Constructor from NumpyAnyArray.
1566- * Equivalent to NumpyArray(other.pyObject())
1567- */
1568- NumpyArray(const NumpyAnyArray &other, bool createCopy = false)
1569- {
1570- if(!other.hasData())
1571- return;
1572- if(createCopy)
1573- makeCopy(other.pyObject());
1574- else
1575- vigra_precondition(makeReference(other.pyObject()), //, false),
1576- "NumpyArray(NumpyAnyArray): Cannot construct from incompatible or empty array.");
1577- }
1578-
1579- /**
1580- * Assignment operator. If this is already a view with data
1581- * (i.e. hasData() is true) and the shapes match, the RHS
1582- * array contents are copied. If this is an empty view,
1583- * assignment is identical to makeReferenceUnchecked(other.pyObject()).
1584- * See MultiArrayView::operator= for further information on
1585- * semantics.
1586- */
1587- NumpyArray &operator=(const NumpyArray &other)
1588- {
1589- if(hasData())
1590- view_type::operator=(other);
1591- else
1592- makeReferenceUnchecked(other.pyObject());
1593- return *this;
1594- }
1595-
1596- /**
1597- * Assignment operator. If this is already a view with data
1598- * (i.e. hasData() is true) and the shapes match, the RHS
1599- * array contents are copied.
1600- * If this is an empty view, assignment is identical to
1601- * makeReference(other.pyObject()).
1602- * Otherwise, an exception is thrown.
1603- */
1604- NumpyArray &operator=(const NumpyAnyArray &other)
1605- {
1606- if(hasData())
1607- {
1608- NumpyAnyArray::operator=(other);
1609- }
1610- else if(isStrictlyCompatible(other.pyObject()))
1611- {
1612- makeReferenceUnchecked(other.pyObject());
1613- }
1614- else
1615- {
1616- vigra_precondition(false,
1617- "NumpyArray::operator=(): Cannot assign from incompatible array.");
1618- }
1619- return *this;
1620- }
1621-
1622- /**
1623- * Test whether a given python object is a numpy array that can be
1624- * converted (copied) into an array compatible to this NumpyArray type.
1625- * This means that the array's shape conforms to the requirements of
1626- * makeCopy().
1627- */
1628- static bool isCopyCompatible(PyObject *obj)
1629- {
1630- return ArrayTraits::isArray(obj) &&
1631- ArrayTraits::isShapeCompatible((PyArrayObject *)obj);
1632- }
1633-
1634- /**
1635- * Test whether a given python object is a numpy array with a
1636- * compatible dtype and the correct shape and strides, so that it
1637- * can be referenced as a view by this NumpyArray type (i.e.
1638- * it conforms to the requirements of makeReference()).
1639- */
1640- static bool isReferenceCompatible(PyObject *obj)
1641- {
1642- return ArrayTraits::isArray(obj) &&
1643- ArrayTraits::isPropertyCompatible((PyArrayObject *)obj);
1644- }
1645-
1646- /**
1647- * Like isReferenceCompatible(obj), but also executes a customized type compatibility
1648- * check when such a check has been registered for this class via
1649- * registerPythonArrayType().
1650- *
1651- * This facilitates proper overload resolution between
1652- * NumpyArray<3, Multiband<T> > (a multiband image) and NumpyArray<3, Singleband<T> > (a scalar volume).
1653- */
1654- static bool isStrictlyCompatible(PyObject *obj)
1655- {
1656-#if VIGRA_CONVERTER_DEBUG
1657- std::cerr << "class " << typeid(NumpyArray).name() << " got " << obj->ob_type->tp_name << "\n";
1658- bool isClassCompatible=ArrayTraits::isClassCompatible(obj);
1659- bool isPropertyCompatible((PyArrayObject *)obj);
1660- std::cerr<<"isClassCompatible: "<<isClassCompatible<<std::endl;
1661- std::cerr<<"isPropertyCompatible: "<<isPropertyCompatible<<std::endl;
1662-#endif
1663- return ArrayTraits::isClassCompatible(obj) &&
1664- ArrayTraits::isPropertyCompatible((PyArrayObject *)obj);
1665- }
1666-
1667- /**
1668- * Create a vector representing the standard stride ordering of a NumpyArray.
1669- * That is, we get a vector representing the range [0,...,N-1], which
1670- * denotes the stride ordering for Fortran order.
1671- */
1672- static difference_type standardStrideOrdering()
1673- {
1674- difference_type strideOrdering;
1675- for(unsigned int k=0; k<N; ++k)
1676- strideOrdering[k] = k;
1677- return strideOrdering;
1678- }
1679-
1680- /**
1681- * Set up a view to the given object without checking compatibility.
1682- * This function must not be used unless isReferenceCompatible(obj) returned
1683- * true on the given object (otherwise, a crash is likely).
1684- */
1685- void makeReferenceUnchecked(PyObject *obj)
1686- {
1687- NumpyAnyArray::makeReference(obj);
1688- setupArrayView();
1689- }
1690-
1691- /**
1692- * Try to set up a view referencing the given PyObject.
1693- * Returns false if the python object is not a compatible
1694- * numpy array (see isReferenceCompatible() or
1695- * isStrictlyCompatible(), according to the parameter \a
1696- * strict).
1697- */
1698- bool makeReference(PyObject *obj, bool strict = true)
1699- {
1700- if(strict)
1701- {
1702- if(!isStrictlyCompatible(obj))
1703- return false;
1704- }
1705- else
1706- {
1707- if(!isReferenceCompatible(obj))
1708- return false;
1709- }
1710- makeReferenceUnchecked(obj);
1711- return true;
1712- }
1713-
1714- /**
1715- * Try to set up a view referencing the same data as the given
1716- * NumpyAnyArray. This overloaded variant simply calls
1717- * makeReference() on array.pyObject().
1718- */
1719- bool makeReference(const NumpyAnyArray &array, bool strict = true)
1720- {
1721- return makeReference(array.pyObject(), strict);
1722- }
1723-
1724- /**
1725- * Set up an unsafe reference to the given MultiArrayView.
1726- * ATTENTION: This creates a numpy.ndarray that points to the
1727- * same data, but does not own it, so it must be ensured by
1728- * other means that the memory does not get freed before the
1729- * end of the ndarray's lifetime! (One elegant way would be
1730- * to set the 'base' attribute of the resulting ndarray to a
1731- * python object which directly or indirectly holds the memory
1732- * of the given MultiArrayView.)
1733- */
1734- void makeReference(const view_type &multiArrayView)
1735- {
1736- vigra_precondition(!hasData(), "makeReference(): cannot replace existing view with given buffer");
1737-
1738- // construct an ndarray that points to our data (taking strides into account):
1739- python_ptr array(ArrayTraits::constructor(multiArrayView.shape(), multiArrayView.data(), multiArrayView.stride()));
1740-
1741- view_type::operator=(multiArrayView);
1742- pyArray_ = array;
1743- }
1744-
1745- /**
1746- Try to create a copy of the given PyObject.
1747- Raises an exception when obj is not a compatible array
1748- (see isCopyCompatible() or isStrictlyCompatible(), according to the
1749- parameter \a strict) or the Python constructor call failed.
1750- */
1751- void makeCopy(PyObject *obj, bool strict = false)
1752- {
1753- vigra_precondition(strict ? isStrictlyCompatible(obj) : isCopyCompatible(obj),
1754- "NumpyArray::makeCopy(obj): Cannot copy an incompatible array.");
1755-
1756- int M = PyArray_NDIM(obj);
1757- TinyVector<npy_intp, N> shape;
1758- std::copy(PyArray_DIMS(obj), PyArray_DIMS(obj)+M, shape.begin());
1759- if(M == N-1)
1760- shape[M] = 1;
1761- vigra_postcondition(makeReference(init(shape, false)),
1762- "NumpyArray::makeCopy(obj): Copy created an incompatible array.");
1763- NumpyAnyArray::operator=(NumpyAnyArray(obj));
1764-// if(PyArray_CopyInto(pyArray(), (PyArrayObject*)obj) == -1)
1765-// pythonToCppException(0);
1766- }
1767-
1768- /**
1769- Allocate new memory with the given shape and initialize with zeros.<br>
1770- If a stride ordering is given, the resulting array will have this stride
1771- ordering, when it is compatible with the array's memory layout (unstrided
1772- arrays only permit the standard ascending stride ordering).
1773-
1774- <em>Note:</em> this operation invalidates dependent objects
1775- (MultiArrayViews and iterators)
1776- */
1777- void reshape(difference_type const & shape, difference_type const & strideOrdering = standardStrideOrdering())
1778- {
1779- vigra_postcondition(makeReference(init(shape, strideOrdering)),
1780- "NumpyArray(shape): Python constructor did not produce a compatible array.");
1781- }
1782-
1783- /**
1784- When this array has no data, allocate new memory with the given \a shape and
1785- initialize with zeros. Otherwise, check if the new shape matches the old shape
1786- and throw a precondition exception with the given \a message if not.
1787- */
1788- void reshapeIfEmpty(difference_type const & shape, std::string message = "")
1789- {
1790- reshapeIfEmpty(shape, standardStrideOrdering(), message);
1791- }
1792-
1793- /**
1794- When this array has no data, allocate new memory with the given \a shape and
1795- initialize with zeros. Otherwise, check if the new shape matches the old shape
1796- and throw a precondition exception with the given \a message if not. If strict
1797- is true, the given stride ordering must also match that of the existing data.
1798- */
1799- void reshapeIfEmpty(difference_type const & shape, difference_type const & strideOrdering,
1800- std::string message = "", bool strict = false)
1801- {
1802- if(hasData())
1803- {
1804- if(strict)
1805- {
1806- if(message == "")
1807- message = "NumpyArray::reshapeIfEmpty(shape): array was not empty, and shape or stride ordering did not match.";
1808- vigra_precondition(shape == this->shape() && strideOrdering == this->strideOrdering(), message.c_str());
1809- }
1810- else
1811- {
1812- if(message == "")
1813- message = "NumpyArray::reshapeIfEmpty(shape): array was not empty, and shape did not match.";
1814- vigra_precondition(shape == this->shape(), message.c_str());
1815- }
1816- }
1817- else
1818- {
1819- reshape(shape, strideOrdering);
1820- }
1821- }
1822-};
1823-
1824- // this function assumes that pyArray_ has already been set, and compatibility been checked
1825-template <unsigned int N, class T, class Stride>
1826-void NumpyArray<N, T, Stride>::setupArrayView()
1827-{
1828- if(NumpyAnyArray::hasData())
1829- {
1830- unsigned int dimension = std::min<unsigned int>(actual_dimension, pyArray()->nd);
1831- std::copy(pyArray()->dimensions, pyArray()->dimensions + dimension, this->m_shape.begin());
1832- std::copy(pyArray()->strides, pyArray()->strides + dimension, this->m_stride.begin());
1833- if(pyArray()->nd < actual_dimension)
1834- {
1835- this->m_shape[dimension] = 1;
1836- this->m_stride[dimension] = sizeof(value_type);
1837- }
1838- this->m_stride /= sizeof(value_type);
1839- this->m_ptr = reinterpret_cast<pointer>(pyArray()->data);
1840- }
1841- else
1842- {
1843- this->m_ptr = 0;
1844- }
1845-}
1846-
1847-
1848-typedef NumpyArray<2, float > NumpyFArray2;
1849-typedef NumpyArray<3, float > NumpyFArray3;
1850-typedef NumpyArray<4, float > NumpyFArray4;
1851-typedef NumpyArray<2, Singleband<float> > NumpyFImage;
1852-typedef NumpyArray<3, Singleband<float> > NumpyFVolume;
1853-typedef NumpyArray<2, RGBValue<float> > NumpyFRGBImage;
1854-typedef NumpyArray<3, RGBValue<float> > NumpyFRGBVolume;
1855-typedef NumpyArray<3, Multiband<float> > NumpyFMultibandImage;
1856-typedef NumpyArray<4, Multiband<float> > NumpyFMultibandVolume;
1857-
1858-inline void import_vigranumpy()
1859-{
1860- if(_import_array() < 0)
1861- pythonToCppException(0);
1862- python_ptr module(PyImport_ImportModule("vigra.vigranumpycore"), python_ptr::keep_count);
1863- pythonToCppException(module);
1864-}
1865-
1866-/********************************************************/
1867-/* */
1868-/* NumpyArray Multiband Argument Object Factories */
1869-/* */
1870-/********************************************************/
1871-
1872-template <class PixelType, class Stride>
1873-inline triple<ConstStridedImageIterator<PixelType>,
1874- ConstStridedImageIterator<PixelType>,
1875- MultibandVectorAccessor<PixelType> >
1876-srcImageRange(NumpyArray<3, Multiband<PixelType>, Stride> const & img)
1877-{
1878- ConstStridedImageIterator<PixelType>
1879- ul(img.data(), 1, img.stride(0), img.stride(1));
1880- return triple<ConstStridedImageIterator<PixelType>,
1881- ConstStridedImageIterator<PixelType>,
1882- MultibandVectorAccessor<PixelType> >
1883- (ul, ul + Size2D(img.shape(0), img.shape(1)), MultibandVectorAccessor<PixelType>(img.shape(2), img.stride(2)));
1884-}
1885-
1886-template <class PixelType, class Stride>
1887-inline pair< ConstStridedImageIterator<PixelType>,
1888- MultibandVectorAccessor<PixelType> >
1889-srcImage(NumpyArray<3, Multiband<PixelType>, Stride> const & img)
1890-{
1891- ConstStridedImageIterator<PixelType>
1892- ul(img.data(), 1, img.stride(0), img.stride(1));
1893- return pair<ConstStridedImageIterator<PixelType>, MultibandVectorAccessor<PixelType> >
1894- (ul, MultibandVectorAccessor<PixelType>(img.shape(2), img.stride(2)));
1895-}
1896-
1897-template <class PixelType, class Stride>
1898-inline triple< StridedImageIterator<PixelType>,
1899- StridedImageIterator<PixelType>,
1900- MultibandVectorAccessor<PixelType> >
1901-destImageRange(NumpyArray<3, Multiband<PixelType>, Stride> & img)
1902-{
1903- StridedImageIterator<PixelType>
1904- ul(img.data(), 1, img.stride(0), img.stride(1));
1905- typedef typename AccessorTraits<PixelType>::default_accessor Accessor;
1906- return triple<StridedImageIterator<PixelType>,
1907- StridedImageIterator<PixelType>,
1908- MultibandVectorAccessor<PixelType> >
1909- (ul, ul + Size2D(img.shape(0), img.shape(1)),
1910- MultibandVectorAccessor<PixelType>(img.shape(2), img.stride(2)));
1911-}
1912-
1913-template <class PixelType, class Stride>
1914-inline pair< StridedImageIterator<PixelType>,
1915- MultibandVectorAccessor<PixelType> >
1916-destImage(NumpyArray<3, Multiband<PixelType>, Stride> & img)
1917-{
1918- StridedImageIterator<PixelType>
1919- ul(img.data(), 1, img.stride(0), img.stride(1));
1920- return pair<StridedImageIterator<PixelType>, MultibandVectorAccessor<PixelType> >
1921- (ul, MultibandVectorAccessor<PixelType>(img.shape(2), img.stride(2)));
1922-}
1923-
1924-template <class PixelType, class Stride>
1925-inline pair< ConstStridedImageIterator<PixelType>,
1926- MultibandVectorAccessor<PixelType> >
1927-maskImage(NumpyArray<3, Multiband<PixelType>, Stride> const & img)
1928-{
1929- ConstStridedImageIterator<PixelType>
1930- ul(img.data(), 1, img.stride(0), img.stride(1));
1931- typedef typename AccessorTraits<PixelType>::default_accessor Accessor;
1932- return pair<ConstStridedImageIterator<PixelType>, MultibandVectorAccessor<PixelType> >
1933- (ul, MultibandVectorAccessor<PixelType>(img.shape(2), img.stride(2)));
1934-}
1935-
1936-} // namespace vigra
1937-
1938-#endif // VIGRA_NUMPY_ARRAY_HXX
1939
1940=== removed directory '.pc/debian-changes-1.7.1+dfsg1-2ubuntu1/vigranumpy'
1941=== removed directory '.pc/debian-changes-1.7.1+dfsg1-2ubuntu1/vigranumpy/docsrc'
1942=== removed file '.pc/debian-changes-1.7.1+dfsg1-2ubuntu1/vigranumpy/docsrc/conf.py.THIS'
1943=== added directory '.pc/fix-ftbfs-gcc4.7.diff'
1944=== added directory '.pc/fix-ftbfs-gcc4.7.diff/include'
1945=== added directory '.pc/fix-ftbfs-gcc4.7.diff/include/vigra'
1946=== added file '.pc/fix-ftbfs-gcc4.7.diff/include/vigra/box.hxx'
1947--- .pc/fix-ftbfs-gcc4.7.diff/include/vigra/box.hxx 1970-01-01 00:00:00 +0000
1948+++ .pc/fix-ftbfs-gcc4.7.diff/include/vigra/box.hxx 2012-06-14 20:29:21 +0000
1949@@ -0,0 +1,545 @@
1950+/************************************************************************/
1951+/* */
1952+/* Copyright 2009-2010 by Ullrich Koethe and Hans Meine */
1953+/* */
1954+/* This file is part of the VIGRA computer vision library. */
1955+/* The VIGRA Website is */
1956+/* http://hci.iwr.uni-heidelberg.de/vigra/ */
1957+/* Please direct questions, bug reports, and contributions to */
1958+/* ullrich.koethe@iwr.uni-heidelberg.de or */
1959+/* vigra@informatik.uni-hamburg.de */
1960+/* */
1961+/* Permission is hereby granted, free of charge, to any person */
1962+/* obtaining a copy of this software and associated documentation */
1963+/* files (the "Software"), to deal in the Software without */
1964+/* restriction, including without limitation the rights to use, */
1965+/* copy, modify, merge, publish, distribute, sublicense, and/or */
1966+/* sell copies of the Software, and to permit persons to whom the */
1967+/* Software is furnished to do so, subject to the following */
1968+/* conditions: */
1969+/* */
1970+/* The above copyright notice and this permission notice shall be */
1971+/* included in all copies or substantial portions of the */
1972+/* Software. */
1973+/* */
1974+/* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND */
1975+/* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES */
1976+/* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND */
1977+/* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT */
1978+/* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, */
1979+/* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING */
1980+/* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR */
1981+/* OTHER DEALINGS IN THE SOFTWARE. */
1982+/* */
1983+/************************************************************************/
1984+
1985+#ifndef VIGRA_BOX_HXX
1986+#define VIGRA_BOX_HXX
1987+
1988+#include "metaprogramming.hxx"
1989+#include "numerictraits.hxx"
1990+#include "tinyvector.hxx"
1991+
1992+namespace vigra {
1993+
1994+namespace detail {
1995+
1996+// RangePolicy used for floating point coordinate types
1997+template<class VALUETYPE>
1998+struct EndInsidePolicy
1999+{
2000+ static inline bool isEmptyRange(VALUETYPE b, VALUETYPE e)
2001+ {
2002+ return e < b; // <=
2003+ }
2004+
2005+ static inline VALUETYPE pointEnd(VALUETYPE p)
2006+ {
2007+ return p; // +1
2008+ }
2009+};
2010+
2011+// RangePolicy used for integer coordinate types
2012+template<class VALUETYPE>
2013+struct EndOutsidePolicy
2014+{
2015+ static inline bool isEmptyRange(VALUETYPE b, VALUETYPE e)
2016+ {
2017+ return e <= b;
2018+ }
2019+
2020+ static inline VALUETYPE pointEnd(VALUETYPE p)
2021+ {
2022+ return p+1;
2023+ }
2024+};
2025+
2026+} // namespace vigra::detail
2027+
2028+/** \addtogroup RangesAndPoints */
2029+//@{
2030+ /** \brief Represent an n-dimensional box as a (begin, end) pair.
2031+ * Depending on the value type, end() is considered to be
2032+ * outside the box (as in the STL, for integer types), or
2033+ * inside (for floating point types). size() will always be
2034+ * end() - begin().
2035+ */
2036+template<class VALUETYPE, unsigned int DIMENSION>
2037+class Box
2038+{
2039+ public:
2040+ /** STL-compatible definition of coordinate valuetype
2041+ */
2042+ typedef VALUETYPE value_type;
2043+
2044+ /** Promoted coordinate valuetype, used for volume()
2045+ */
2046+ typedef typename NumericTraits<VALUETYPE>::Promote VolumeType;
2047+
2048+ /** Vector type used for begin() and end()
2049+ */
2050+ typedef TinyVector<VALUETYPE, DIMENSION> Vector;
2051+
2052+ enum { Dimension = DIMENSION };
2053+
2054+ protected:
2055+ Vector begin_, end_;
2056+
2057+ /** Range policy (EndInsidePolicy/EndOutsidePolicy, depending on valuetype)
2058+ */
2059+ typedef typename If<typename NumericTraits<VALUETYPE>::isIntegral,
2060+ detail::EndOutsidePolicy<VALUETYPE>,
2061+ detail::EndInsidePolicy<VALUETYPE> >::type RangePolicy;
2062+
2063+ public:
2064+ /** Construct an empty box (isEmpty() will return true).
2065+ * (Internally, this will initialize all dimensions with the
2066+ * empty range [1..0].)
2067+ */
2068+ Box()
2069+ : begin_(NumericTraits<Vector>::one())
2070+ {}
2071+
2072+ /** Construct a box representing the given range. Depending
2073+ * on the value type, end() is considered to be outside the
2074+ * box (as in the STL, for integer types), or inside (for
2075+ * floating point types).
2076+ */
2077+ Box(Vector const &begin, Vector const &end)
2078+ : begin_(begin), end_(end)
2079+ {}
2080+
2081+ /** Construct a box of given size at the origin (i.e. end() ==
2082+ * size()).
2083+ */
2084+ explicit Box(Vector const &size)
2085+ : end_(size)
2086+ {}
2087+
2088+ /** Get begin vector (i.e. smallest coordinates for each
2089+ * dimension). This is the first point (scan-order wise)
2090+ * which is considered to be "in" the box.
2091+ */
2092+ Vector const & begin() const
2093+ {
2094+ return begin_;
2095+ }
2096+
2097+ /** Access begin vector (i.e. smallest coordinates for each
2098+ * dimension). This is the first point (scan-order wise)
2099+ * which is considered to be "in" the box.
2100+ */
2101+ Vector & begin()
2102+ {
2103+ return begin_;
2104+ }
2105+
2106+ /** Get end vector (i.e. coordinates higher than begin() in
2107+ * each dimension for non-empty boxes). This is begin() +
2108+ * size(), and depending on the valuetype (float/int), this is
2109+ * the last point within or the first point outside the box,
2110+ * respectively.
2111+ */
2112+ Vector const & end() const
2113+ {
2114+ return end_;
2115+ }
2116+
2117+ /** Access end vector (i.e. coordinates higher than begin() in
2118+ * each dimension for non-empty boxes). This is begin() +
2119+ * size(), and depending on the valuetype (float/int), this is
2120+ * the last point within or the first point outside the box,
2121+ * respectively.
2122+ */
2123+ Vector & end()
2124+ {
2125+ return end_;
2126+ }
2127+
2128+ /** Change begin() without changing end(), changing size()
2129+ * accordingly.
2130+ */
2131+ void setBegin(Vector const &begin)
2132+ {
2133+ begin_ = begin;
2134+ }
2135+
2136+ /** Change end() without changing begin(), which will change
2137+ * the size() most probably.
2138+ */
2139+ void setEnd(Vector const &end)
2140+ {
2141+ end_ = end;
2142+ }
2143+
2144+ /** Move the whole box so that the given point will be
2145+ * begin() afterwards.
2146+ */
2147+ void moveTo(Vector const &newBegin)
2148+ {
2149+ end_ += newBegin - begin_;
2150+ begin_ = newBegin;
2151+ }
2152+
2153+ /** Move the whole box by the given offset.
2154+ * (Equivalent to operator+=)
2155+ */
2156+ void moveBy(Vector const &offset)
2157+ {
2158+ begin_ += offset;
2159+ end_ += offset;
2160+ }
2161+
2162+ /** Determine and return the area of this box. That is,
2163+ * if this rect isEmpty(), returns zero, otherwise returns the
2164+ * product of the extents in each dimension.
2165+ */
2166+ VolumeType volume() const
2167+ {
2168+ if(isEmpty())
2169+ return 0;
2170+
2171+ VolumeType result(end_[0] - begin_[0]);
2172+ for(unsigned int i = 1; i < DIMENSION; ++i)
2173+ result *= end_[i] - begin_[i];
2174+ return result;
2175+ }
2176+
2177+ /** Determine and return the size of this box. The size
2178+ * might be zero or even negative in one or more dimensions,
2179+ * and if so, isEmpty() will return true.
2180+ */
2181+ Vector size() const
2182+ {
2183+ return end_ - begin_;
2184+ }
2185+
2186+ /** Resize this box to the given extents. This will
2187+ * change end() only.
2188+ */
2189+ void setSize(Vector const &size)
2190+ {
2191+ end_ = begin_ + size;
2192+ }
2193+
2194+ /** Increase the size of the box by the given
2195+ * offset. This will move end() only. (If any of offset's
2196+ * components is negative, the box will get smaller
2197+ * accordingly.)
2198+ */
2199+ void addSize(Vector const &offset)
2200+ {
2201+ end_ += offset;
2202+ }
2203+
2204+ /** Adds a border of the given width around the box. That
2205+ * means, begin()'s components are moved by -borderWidth
2206+ * and end()'s by borderWidth. (If borderWidth is
2207+ * negative, the box will get smaller accordingly.)
2208+ */
2209+ void addBorder(VALUETYPE borderWidth)
2210+ {
2211+ for(unsigned int i = 0; i < DIMENSION; ++i)
2212+ {
2213+ begin_[i] -= borderWidth;
2214+ end_[i] += borderWidth;
2215+ }
2216+ }
2217+
2218+ /// equality check
2219+ bool operator==(Box const &r) const
2220+ {
2221+ return (begin_ == r.begin_) && (end_ == r.end_);
2222+ }
2223+
2224+ /// inequality check
2225+ bool operator!=(Box const &r) const
2226+ {
2227+ return (begin_ != r.begin_) || (end_ != r.end_);
2228+ }
2229+
2230+ /** Return whether this box is considered empty. It is
2231+ * non-empty if all end() coordinates are greater than (or
2232+ * equal, for floating point valuetypes) the corresponding
2233+ * begin() coordinates. Uniting an empty box with something
2234+ * will return the bounding box of the 'something', and
2235+ * intersecting any box with an empty box will again yield an
2236+ * empty box.
2237+ */
2238+ bool isEmpty() const
2239+ {
2240+ for(unsigned int i = 0; i < DIMENSION; ++i)
2241+ if(RangePolicy::isEmptyRange(begin_[i], end_[i]))
2242+ return true;
2243+ return false;
2244+ }
2245+
2246+ /** Return whether this box contains the given point.
2247+ * That is, if the point lies within the range [begin, end] in
2248+ * each dimension (excluding end() itself for integer valuetypes).
2249+ */
2250+ bool contains(Vector const &p) const
2251+ {
2252+ for(unsigned int i = 0; i < DIMENSION; ++i)
2253+ if((p[i] < begin_[i]) ||
2254+ RangePolicy::isEmptyRange(p[i], end_[i]))
2255+ return false;
2256+ return true;
2257+ }
2258+
2259+ /** Return whether this box contains the given
2260+ * one. <tt>r1.contains(r2)</tt> returns the same as
2261+ * <tt>r1 == (r1|r2)</tt> (but is of course more
2262+ * efficient). That also means, a box (even an empty one!)
2263+ * contains() any empty box.
2264+ */
2265+ bool contains(Box const &r) const
2266+ {
2267+ if(r.isEmpty())
2268+ return true;
2269+ if(!contains(r.begin_))
2270+ return false;
2271+ for(unsigned int i = 0; i < DIMENSION; ++i)
2272+ if(r.end_[i] > end_[i])
2273+ return false;
2274+ return true;
2275+ }
2276+
2277+ /** Return whether this box overlaps with the given
2278+ * one. <tt>r1.intersects(r2)</tt> returns the same as
2279+ * <tt>!(r1&r2).isEmpty()</tt> (but is of course much more
2280+ * efficient).
2281+ */
2282+ bool intersects(Box const &r) const
2283+ {
2284+ if(r.isEmpty() || isEmpty())
2285+ return false;
2286+ for(unsigned int i = 0; i < DIMENSION; ++i)
2287+ if(RangePolicy::isEmptyRange(r.begin_[i], end_[i]) ||
2288+ RangePolicy::isEmptyRange(begin_[i], r.end_[i]))
2289+ return false;
2290+ return true;
2291+ }
2292+
2293+ /** Modifies this box by including the given point.
2294+ * The result will be the bounding box of the box and the
2295+ * point. If isEmpty() returns true on the original box, the
2296+ * union will be a box containing only the given point.
2297+ */
2298+ Box &operator|=(Vector const &p)
2299+ {
2300+ if(isEmpty())
2301+ {
2302+ begin_ = p;
2303+ for(unsigned int i = 0; i < DIMENSION; ++i)
2304+ end_[i] = RangePolicy::pointEnd(p[i]);
2305+ }
2306+ else
2307+ {
2308+ for(unsigned int i = 0; i < DIMENSION; ++i)
2309+ {
2310+ if(p[i] < begin_[i])
2311+ begin_[i] = p[i];
2312+ if(RangePolicy::isEmptyRange(p[i], end_[i]))
2313+ end_[i] = RangePolicy::pointEnd(p[i]);
2314+ }
2315+ }
2316+ return *this;
2317+ }
2318+
2319+ /** Returns the union of this box and the given point.
2320+ * The result will be the bounding box of the box and the
2321+ * point. If isEmpty() returns true on the original box, the
2322+ * union will be a box containing only the given point.
2323+ */
2324+ Box operator|(Vector const &p) const
2325+ {
2326+ Box result(*this);
2327+ result |= p;
2328+ return result;
2329+ }
2330+
2331+ /** Modifies this box by uniting it with the given one.
2332+ * The result will be the bounding box of both boxs. If one of
2333+ * the boxes isEmpty(), the union will be the other one.
2334+ */
2335+ Box &operator|=(Box const &r)
2336+ {
2337+ if(r.isEmpty())
2338+ return *this;
2339+ if(isEmpty())
2340+ return operator=(r);
2341+
2342+ for(unsigned int i = 0; i < DIMENSION; ++i)
2343+ {
2344+ if(r.begin_[i] < begin_[i])
2345+ begin_[i] = r.begin_[i];
2346+ if(end_[i] < r.end_[i])
2347+ end_[i] = r.end_[i];
2348+ }
2349+ return *this;
2350+ }
2351+
2352+ /** Returns the union of this box and the given one.
2353+ * The result will be the bounding box of both boxs. If one of
2354+ * the boxes isEmpty(), the union will be the other one.
2355+ */
2356+ Box operator|(Box const &r) const
2357+ {
2358+ Box result(*this);
2359+ result |= r;
2360+ return result;
2361+ }
2362+
2363+ /** Modifies this box by intersecting it with the given one.
2364+ * The result will be the maximal box contained in both
2365+ * original ones. Intersecting with an empty box will yield
2366+ * again an empty box.
2367+ */
2368+ Box &operator&=(Box const &r)
2369+ {
2370+ if(isEmpty())
2371+ return *this;
2372+ if(r.isEmpty())
2373+ return operator=(r);
2374+
2375+ for(unsigned int i = 0; i < DIMENSION; ++i)
2376+ {
2377+ if(begin_[i] < r.begin_[i])
2378+ begin_[i] = r.begin_[i];
2379+ if(r.end_[i] < end_[i])
2380+ end_[i] = r.end_[i];
2381+ }
2382+ return *this;
2383+ }
2384+
2385+ /** Intersects this box with the given one.
2386+ * The result will be the maximal box contained in both
2387+ * original ones. Intersecting with an empty box will yield
2388+ * again an empty box.
2389+ */
2390+ Box operator&(Box const &r) const
2391+ {
2392+ Box result(*this);
2393+ result &= r;
2394+ return result;
2395+ }
2396+
2397+ /**
2398+ * Scale box by scalar multiply-assignment. The same scalar
2399+ * multiply-assignment operation will be performed on both
2400+ * begin() and end().
2401+ */
2402+ Box &operator*=(double scale)
2403+ {
2404+ begin_ *= scale;
2405+ end_ *= scale;
2406+ return *this;
2407+ }
2408+
2409+ /**
2410+ * Return box scaled by given factor. The same scalar
2411+ * multiplication will be performed on both begin() and end().
2412+ */
2413+ Box operator*(double scale)
2414+ {
2415+ Box result(*this);
2416+ result *= scale;
2417+ return result;
2418+ }
2419+
2420+ /**
2421+ * Scale box by scalar divide-assignment. The same scalar
2422+ * divide-assignment operation will be performed on both
2423+ * begin() and end().
2424+ */
2425+ Box &operator/=(double scale)
2426+ {
2427+ begin_ /= scale;
2428+ end_ /= scale;
2429+ return *this;
2430+ }
2431+
2432+ /**
2433+ * Return box scaled by inverse of given factor. The same scalar
2434+ * division will be performed on both begin() and end().
2435+ */
2436+ Box operator/(double scale)
2437+ {
2438+ Box result(*this);
2439+ result /= scale;
2440+ return result;
2441+ }
2442+
2443+ /**
2444+ * Translate box by vector addition-assignment. The same vector
2445+ * addition-assignment operation will be performed on both
2446+ * begin() and end().
2447+ */
2448+ Box &operator+=(const Vector &offset)
2449+ {
2450+ begin_ += offset;
2451+ end_ += offset;
2452+ return *this;
2453+ }
2454+
2455+ /**
2456+ * Translate box by vector addition. The same vector addition
2457+ * operation will be performed on both begin() and end().
2458+ */
2459+ Box operator+(const Vector &offset)
2460+ {
2461+ Box result(*this);
2462+ result += offset;
2463+ return result;
2464+ }
2465+
2466+ /**
2467+ * Translate box by vector subtract-assignment. The same vector
2468+ * subtract-assignment operation will be performed on both
2469+ * begin() and end().
2470+ */
2471+ Box &operator-=(const Vector &offset)
2472+ {
2473+ begin_ -= offset;
2474+ end_ -= offset;
2475+ return *this;
2476+ }
2477+
2478+ /**
2479+ * Translate box by vector subtract. The same vector subtract
2480+ * operation will be performed on both begin() and end().
2481+ */
2482+ Box operator-(const Vector &offset)
2483+ {
2484+ Box result(*this);
2485+ result -= offset;
2486+ return result;
2487+ }
2488+};
2489+
2490+//@}
2491+
2492+} // namespace vigra
2493+
2494+#endif // VIGRA_BOX_HXX
2495
2496=== added directory '.pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest'
2497=== added file '.pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_ridge_split.hxx'
2498--- .pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_ridge_split.hxx 1970-01-01 00:00:00 +0000
2499+++ .pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_ridge_split.hxx 2012-06-14 20:29:21 +0000
2500@@ -0,0 +1,449 @@
2501+//
2502+// C++ Interface: rf_ridge_split
2503+//
2504+// Description:
2505+//
2506+//
2507+// Author: Nico Splitthoff <splitthoff@zg00103>, (C) 2009
2508+//
2509+// Copyright: See COPYING file that comes with this distribution
2510+//
2511+//
2512+#ifndef VIGRA_RANDOM_FOREST_RIDGE_SPLIT_H
2513+#define VIGRA_RANDOM_FOREST_RIDGE_SPLIT_H
2514+//#include "rf_sampling.hxx"
2515+#include "../sampling.hxx"
2516+#include "rf_split.hxx"
2517+#include "rf_nodeproxy.hxx"
2518+#include "../regression.hxx"
2519+
2520+#define outm(v) std::cout << (#v) << ": " << (v) << std::endl;
2521+#define outm2(v) std::cout << (#v) << ": " << (v) << ", ";
2522+
2523+namespace vigra
2524+{
2525+
2526+/*template<>
2527+class Node<i_RegrNode>
2528+: public NodeBase
2529+{
2530+public:
2531+ typedef NodeBase BT;
2532+
2533+
2534+ Node( BT::T_Container_type & topology,
2535+ BT::P_Container_type & param,
2536+ int nNumCols)
2537+ : BT(5+nNumCols,2+nNumCols,topology, param)
2538+ {
2539+ BT::typeID() = i_RegrNode;
2540+ }
2541+
2542+ Node( BT::T_Container_type & topology,
2543+ BT::P_Container_type & param,
2544+ INT n )
2545+ : BT(5,2,topology, param, n)
2546+ {}
2547+
2548+ Node( BT & node_)
2549+ : BT(5, 2, node_)
2550+ {}
2551+
2552+ double& threshold()
2553+ {
2554+ return BT::parameters_begin()[1];
2555+ }
2556+
2557+ BT::INT& column()
2558+ {
2559+ return BT::column_data()[0];
2560+ }
2561+
2562+ template<class U, class C>
2563+ BT::INT& next(MultiArrayView<2,U,C> const & feature)
2564+ {
2565+ return (feature(0, column()) < threshold())? child(0):child(1);
2566+ }
2567+};*/
2568+
2569+
2570+template<class ColumnDecisionFunctor, class Tag = ClassificationTag>
2571+class RidgeSplit: public SplitBase<Tag>
2572+{
2573+ public:
2574+
2575+
2576+ typedef SplitBase<Tag> SB;
2577+
2578+ ArrayVector<Int32> splitColumns;
2579+ ColumnDecisionFunctor bgfunc;
2580+
2581+ double region_gini_;
2582+ ArrayVector<double> min_gini_;
2583+ ArrayVector<ptrdiff_t> min_indices_;
2584+ ArrayVector<double> min_thresholds_;
2585+
2586+ int bestSplitIndex;
2587+
2588+ //dns
2589+ bool m_bDoScalingInTraining;
2590+ bool m_bDoBestLambdaBasedOnGini;
2591+
2592+ RidgeSplit()
2593+ :m_bDoScalingInTraining(true),
2594+ m_bDoBestLambdaBasedOnGini(true)
2595+ {
2596+ }
2597+
2598+ double minGini() const
2599+ {
2600+ return min_gini_[bestSplitIndex];
2601+ }
2602+
2603+ int bestSplitColumn() const
2604+ {
2605+ return splitColumns[bestSplitIndex];
2606+ }
2607+
2608+ bool& doScalingInTraining()
2609+ { return m_bDoScalingInTraining; }
2610+
2611+ bool& doBestLambdaBasedOnGini()
2612+ { return m_bDoBestLambdaBasedOnGini; }
2613+
2614+ template<class T>
2615+ void set_external_parameters(ProblemSpec<T> const & in)
2616+ {
2617+ SB::set_external_parameters(in);
2618+ bgfunc.set_external_parameters(in);
2619+ int featureCount_ = in.column_count_;
2620+ splitColumns.resize(featureCount_);
2621+ for(int k=0; k<featureCount_; ++k)
2622+ splitColumns[k] = k;
2623+ min_gini_.resize(featureCount_);
2624+ min_indices_.resize(featureCount_);
2625+ min_thresholds_.resize(featureCount_);
2626+ }
2627+
2628+
2629+ template<class T, class C, class T2, class C2, class Region, class Random>
2630+ int findBestSplit(MultiArrayView<2, T, C> features,
2631+ MultiArrayView<2, T2, C2> multiClassLabels,
2632+ Region & region,
2633+ ArrayVector<Region>& childRegions,
2634+ Random & randint)
2635+ {
2636+
2637+ //std::cerr << "Split called" << std::endl;
2638+ typedef typename Region::IndexIterator IndexIterator;
2639+ typedef typename MultiArrayView <2, T, C>::difference_type fShape;
2640+ typedef typename MultiArrayView <2, T2, C2>::difference_type lShape;
2641+ typedef typename MultiArrayView <2, double>::difference_type dShape;
2642+
2643+ // calculate things that haven't been calculated yet.
2644+// std::cout << "start" << std::endl;
2645+ if(std::accumulate(region.classCounts().begin(),
2646+ region.classCounts().end(), 0) != region.size())
2647+ {
2648+ RandomForestClassCounter< MultiArrayView<2,T2, C2>,
2649+ ArrayVector<double> >
2650+ counter(multiClassLabels, region.classCounts());
2651+ std::for_each( region.begin(), region.end(), counter);
2652+ region.classCountsIsValid = true;
2653+ }
2654+
2655+
2656+ // Is the region pure already?
2657+ region_gini_ = GiniCriterion::impurity(region.classCounts(),
2658+ region.size());
2659+ if(region_gini_ == 0 || region.size() < SB::ext_param_.actual_mtry_ || region.oob_size() < 2)
2660+ return makeTerminalNode(features, multiClassLabels, region, randint);
2661+
2662+ // select columns to be tried.
2663+ for(int ii = 0; ii < SB::ext_param_.actual_mtry_; ++ii)
2664+ std::swap(splitColumns[ii],
2665+ splitColumns[ii+ randint(features.shape(1) - ii)]);
2666+
2667+ //do implicit binary case
2668+ MultiArray<2, T2> labels(lShape(multiClassLabels.shape(0),1));
2669+ //number of classes should be >1, otherwise makeTerminalNode would have been called
2670+ int nNumClasses=0;
2671+ for(int n=0; n<(int)region.classCounts().size(); n++)
2672+ nNumClasses+=((region.classCounts()[n]>0) ? 1:0);
2673+
2674+ //convert to binary case
2675+ if(nNumClasses>2)
2676+ {
2677+ int nMaxClass=0;
2678+ int nMaxClassCounts=0;
2679+ for(int n=0; n<(int)region.classCounts().size(); n++)
2680+ {
2681+ //this should occur in any case:
2682+ //we had more than two non-zero classes in order to get here
2683+ if(region.classCounts()[n]>nMaxClassCounts)
2684+ {
2685+ nMaxClassCounts=region.classCounts()[n];
2686+ nMaxClass=n;
2687+ }
2688+ }
2689+
2690+ //create binary labels
2691+ for(int n=0; n<multiClassLabels.shape(0); n++)
2692+ labels(n,0)=((multiClassLabels(n,0)==nMaxClass) ? 1:0);
2693+ }
2694+ else
2695+ labels=multiClassLabels;
2696+
2697+ //_do implicit binary case
2698+
2699+ //uncomment this for some debugging
2700+/* int nNumCases=features.shape(0);
2701+
2702+ typedef typename MultiArrayView <2, int>::difference_type nShape;
2703+ MultiArray<2, int> elementCounterArray(nShape(nNumCases,1),(int)0);
2704+ int nUniqueElements=0;
2705+ for(int n=0; n<region.size(); n++)
2706+ elementCounterArray[region[n]]++;
2707+
2708+ for(int n=0; n<nNumCases; n++)
2709+ nUniqueElements+=((elementCounterArray[n]>0) ? 1:0);
2710+
2711+ outm(nUniqueElements);
2712+ nUniqueElements=0;
2713+ MultiArray<2, int> elementCounterArray_oob(nShape(nNumCases,1),(int)0);
2714+ for(int n=0; n<region.oob_size(); n++)
2715+ elementCounterArray_oob[region.oob_begin()[n]]++;
2716+ for(int n=0; n<nNumCases; n++)
2717+ nUniqueElements+=((elementCounterArray_oob[n]>0) ? 1:0);
2718+ outm(nUniqueElements);
2719+
2720+ int notUniqueElements=0;
2721+ for(int n=0; n<nNumCases; n++)
2722+ notUniqueElements+=(((elementCounterArray_oob[n]>0) && (elementCounterArray[n]>0)) ? 1:0);
2723+ outm(notUniqueElements);*/
2724+
2725+ //outm(SB::ext_param_.actual_mtry_);
2726+
2727+
2728+//select submatrix of features for regression calculation
2729+ MultiArrayView<2, T, C> cVector;
2730+ MultiArray<2, T> xtrain(fShape(region.size(),SB::ext_param_.actual_mtry_));
2731+ //we only want -1 and 1 for this
2732+ MultiArray<2, double> regrLabels(dShape(region.size(),1));
2733+
2734+ //copy data into a vigra data structure and centre and scale while doing so
2735+ MultiArray<2, double> meanMatrix(dShape(SB::ext_param_.actual_mtry_,1));
2736+ MultiArray<2, double> stdMatrix(dShape(SB::ext_param_.actual_mtry_,1));
2737+ for(int m=0; m<SB::ext_param_.actual_mtry_; m++)
2738+ {
2739+ cVector=columnVector(features, splitColumns[m]);
2740+
2741+ //centre and scale the data
2742+ double dCurrFeatureColumnMean=0.0;
2743+ double dCurrFeatureColumnStd=1.0; //default value
2744+
2745+ //calc mean on bootstrap data
2746+ for(int n=0; n<region.size(); n++)
2747+ dCurrFeatureColumnMean+=cVector[region[n]];
2748+ dCurrFeatureColumnMean/=region.size();
2749+ //calc scaling
2750+ if(m_bDoScalingInTraining)
2751+ {
2752+ for(int n=0; n<region.size(); n++)
2753+ {
2754+ dCurrFeatureColumnStd+=
2755+ (cVector[region[n]]-dCurrFeatureColumnMean)*(cVector[region[n]]-dCurrFeatureColumnMean);
2756+ }
2757+ //unbiased std estimator:
2758+ dCurrFeatureColumnStd=sqrt(dCurrFeatureColumnStd/(region.size()-1));
2759+ }
2760+ //dCurrFeatureColumnStd is still 1.0 if we didn't want scaling
2761+ stdMatrix(m,0)=dCurrFeatureColumnStd;
2762+
2763+ meanMatrix(m,0)=dCurrFeatureColumnMean;
2764+
2765+ //get feature matrix, i.e. A (note that weighting is done automatically
2766+ //since rows can occur multiple times -> bagging)
2767+ for(int n=0; n<region.size(); n++)
2768+ xtrain(n,m)=(cVector[region[n]]-dCurrFeatureColumnMean)/dCurrFeatureColumnStd;
2769+ }
2770+
2771+// std::cout << "middle" << std::endl;
2772+ //get label vector (i.e. b)
2773+ for(int n=0; n<region.size(); n++)
2774+ {
2775+ //we checked for/built binary case further up.
2776+ //class labels should thus be either 0 or 1
2777+ //-> convert to -1 and 1 for regression
2778+ regrLabels(n,0)=((labels[region[n]]==0) ? -1:1);
2779+ }
2780+
2781+ MultiArray<2, double> dLambdas(dShape(11,1));
2782+ int nCounter=0;
2783+ for(int nLambda=-5; nLambda<=5; nLambda++)
2784+ dLambdas[nCounter++]=pow(10.0,nLambda);
2785+ //destination vector for regression coefficients; use same type as for xtrain
2786+ MultiArray<2, double> regrCoef(dShape(SB::ext_param_.actual_mtry_,11));
2787+ ridgeRegressionSeries(xtrain,regrLabels,regrCoef,dLambdas);
2788+
2789+ double dMaxRidgeSum=NumericTraits<double>::min();
2790+ double dCurrRidgeSum;
2791+ int nMaxRidgeSumAtLambdaInd=0;
2792+
2793+ for(int nLambdaInd=0; nLambdaInd<11; nLambdaInd++)
2794+ {
2795+ //just sum up the correct answers
2796+ //(correct means >=intercept for class 1, <intercept for class 0)
2797+ //(intercept=0 or intercept=threshold based on gini)
2798+ dCurrRidgeSum=0.0;
2799+
2800+ //assemble projection vector
2801+ MultiArray<2, double> dDistanceFromHyperplane(dShape(features.shape(0),1));
2802+
2803+ for(int n=0; n<region.oob_size(); n++)
2804+ {
2805+ dDistanceFromHyperplane(region.oob_begin()[n],0)=0.0;
2806+ for (int m=0; m<SB::ext_param_.actual_mtry_; m++)
2807+ {
2808+ dDistanceFromHyperplane(region.oob_begin()[n],0)+=
2809+ features(region.oob_begin()[n],splitColumns[m])*regrCoef(m,nLambdaInd);
2810+ }
2811+ }
2812+
2813+ double dCurrIntercept=0.0;
2814+ if(m_bDoBestLambdaBasedOnGini)
2815+ {
2816+ //calculate gini index
2817+ bgfunc(dDistanceFromHyperplane,
2818+ 0,
2819+ labels,
2820+ region.oob_begin(), region.oob_end(),
2821+ region.classCounts());
2822+ dCurrIntercept=bgfunc.min_threshold_;
2823+ }
2824+ else
2825+ {
2826+ for (int m=0; m<SB::ext_param_.actual_mtry_; m++)
2827+ dCurrIntercept+=meanMatrix(m,0)*regrCoef(m,nLambdaInd);
2828+ }
2829+
2830+ for(int n=0; n<region.oob_size(); n++)
2831+ {
2832+ //check what lambda performs best on oob data
2833+ int nClassPrediction=((dDistanceFromHyperplane(region.oob_begin()[n],0) >=dCurrIntercept) ? 1:0);
2834+ dCurrRidgeSum+=((nClassPrediction == labels(region.oob_begin()[n],0)) ? 1:0);
2835+ }
2836+ if(dCurrRidgeSum>dMaxRidgeSum)
2837+ {
2838+ dMaxRidgeSum=dCurrRidgeSum;
2839+ nMaxRidgeSumAtLambdaInd=nLambdaInd;
2840+ }
2841+ }
2842+
2843+// std::cout << "middle2" << std::endl;
2844+ //create a Node for output
2845+ Node<i_HyperplaneNode> node(SB::ext_param_.actual_mtry_, SB::t_data, SB::p_data);
2846+
2847+ //normalise coeffs
2848+ //data was scaled (by 1.0 or by std) -> take into account
2849+ MultiArray<2, double> dCoeffVector(dShape(SB::ext_param_.actual_mtry_,1));
2850+ for(int n=0; n<SB::ext_param_.actual_mtry_; n++)
2851+ dCoeffVector(n,0)=regrCoef(n,nMaxRidgeSumAtLambdaInd)*stdMatrix(n,0);
2852+
2853+ //calc norm
2854+ double dVnorm=columnVector(regrCoef,nMaxRidgeSumAtLambdaInd).norm();
2855+
2856+ for(int n=0; n<SB::ext_param_.actual_mtry_; n++)
2857+ node.weights()[n]=dCoeffVector(n,0)/dVnorm;
2858+ //_normalise coeffs
2859+
2860+ //save the columns
2861+ node.column_data()[0]=SB::ext_param_.actual_mtry_;
2862+ for(int n=0; n<SB::ext_param_.actual_mtry_; n++)
2863+ node.column_data()[n+1]=splitColumns[n];
2864+
2865+ //assemble projection vector
2866+ //careful here: "region" is a pointer to indices...
2867+ //all the indices in "region" need to have valid data
2868+ //convert from "region" space to original "feature" space
2869+ MultiArray<2, double> dDistanceFromHyperplane(dShape(features.shape(0),1));
2870+
2871+ for(int n=0; n<region.size(); n++)
2872+ {
2873+ dDistanceFromHyperplane(region[n],0)=0.0;
2874+ for (int m=0; m<SB::ext_param_.actual_mtry_; m++)
2875+ {
2876+ dDistanceFromHyperplane(region[n],0)+=
2877+ features(region[n],m)*node.weights()[m];
2878+ }
2879+ }
2880+ for(int n=0; n<region.oob_size(); n++)
2881+ {
2882+ dDistanceFromHyperplane(region.oob_begin()[n],0)=0.0;
2883+ for (int m=0; m<SB::ext_param_.actual_mtry_; m++)
2884+ {
2885+ dDistanceFromHyperplane(region.oob_begin()[n],0)+=
2886+ features(region.oob_begin()[n],m)*node.weights()[m];
2887+ }
2888+ }
2889+
2890+ //calculate gini index
2891+ bgfunc(dDistanceFromHyperplane,
2892+ 0,
2893+ labels,
2894+ region.begin(), region.end(),
2895+ region.classCounts());
2896+
2897+ // did not find any suitable split
2898+ if(closeAtTolerance(bgfunc.min_gini_, NumericTraits<double>::max()))
2899+ return makeTerminalNode(features, multiClassLabels, region, randint);
2900+
2901+ //take gini threshold here due to scaling, normalisation, etc. of the coefficients
2902+ node.intercept() = bgfunc.min_threshold_;
2903+ SB::node_ = node;
2904+
2905+ childRegions[0].classCounts() = bgfunc.bestCurrentCounts[0];
2906+ childRegions[1].classCounts() = bgfunc.bestCurrentCounts[1];
2907+ childRegions[0].classCountsIsValid = true;
2908+ childRegions[1].classCountsIsValid = true;
2909+
2910+ // Save the ranges of the child stack entries.
2911+ childRegions[0].setRange( region.begin() , region.begin() + bgfunc.min_index_ );
2912+ childRegions[0].rule = region.rule;
2913+ childRegions[0].rule.push_back(std::make_pair(1, 1.0));
2914+ childRegions[1].setRange( region.begin() + bgfunc.min_index_ , region.end() );
2915+ childRegions[1].rule = region.rule;
2916+ childRegions[1].rule.push_back(std::make_pair(1, 1.0));
2917+
2918+ //adjust oob ranges
2919+// std::cout << "adjust oob" << std::endl;
2920+ //sort the oobs
2921+ std::sort(region.oob_begin(), region.oob_end(),
2922+ SortSamplesByDimensions< MultiArray<2, double> > (dDistanceFromHyperplane, 0));
2923+
2924+ //find split index
2925+ int nOOBindx;
2926+ for(nOOBindx=0; nOOBindx<region.oob_size(); nOOBindx++)
2927+ {
2928+ if(dDistanceFromHyperplane(region.oob_begin()[nOOBindx],0)>=node.intercept())
2929+ break;
2930+ }
2931+
2932+ childRegions[0].set_oob_range( region.oob_begin() , region.oob_begin() + nOOBindx );
2933+ childRegions[1].set_oob_range( region.oob_begin() + nOOBindx , region.oob_end() );
2934+
2935+// std::cout << "end" << std::endl;
2936+// outm2(region.oob_begin());outm2(nOOBindx);outm(region.oob_begin() + nOOBindx);
2937+ //_adjust oob ranges
2938+
2939+ return i_HyperplaneNode;
2940+ }
2941+};
2942+
2943+/** Standard ridge regression split
2944+ */
2945+typedef RidgeSplit<BestGiniOfColumn<GiniCriterion> > GiniRidgeSplit;
2946+
2947+
2948+} //namespace vigra
2949+#endif // VIGRA_RANDOM_FOREST_RIDGE_SPLIT_H
2950
2951=== added file '.pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_split.hxx'
2952--- .pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_split.hxx 1970-01-01 00:00:00 +0000
2953+++ .pc/fix-ftbfs-gcc4.7.diff/include/vigra/random_forest/rf_split.hxx 2012-06-14 20:29:21 +0000
2954@@ -0,0 +1,1199 @@
2955+/************************************************************************/
2956+/* */
2957+/* Copyright 2008-2009 by Ullrich Koethe and Rahul Nair */
2958+/* */
2959+/* This file is part of the VIGRA computer vision library. */
2960+/* The VIGRA Website is */
2961+/* http://hci.iwr.uni-heidelberg.de/vigra/ */
2962+/* Please direct questions, bug reports, and contributions to */
2963+/* ullrich.koethe@iwr.uni-heidelberg.de or */
2964+/* vigra@informatik.uni-hamburg.de */
2965+/* */
2966+/* Permission is hereby granted, free of charge, to any person */
2967+/* obtaining a copy of this software and associated documentation */
2968+/* files (the "Software"), to deal in the Software without */
2969+/* restriction, including without limitation the rights to use, */
2970+/* copy, modify, merge, publish, distribute, sublicense, and/or */
2971+/* sell copies of the Software, and to permit persons to whom the */
2972+/* Software is furnished to do so, subject to the following */
2973+/* conditions: */
2974+/* */
2975+/* The above copyright notice and this permission notice shall be */
2976+/* included in all copies or substantial portions of the */
2977+/* Software. */
2978+/* */
2979+/* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND */
2980+/* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES */
2981+/* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND */
2982+/* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT */
2983+/* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, */
2984+/* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING */
2985+/* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR */
2986+/* OTHER DEALINGS IN THE SOFTWARE. */
2987+/* */
2988+/************************************************************************/
2989+#ifndef VIGRA_RANDOM_FOREST_SPLIT_HXX
2990+#define VIGRA_RANDOM_FOREST_SPLIT_HXX
2991+#include <algorithm>
2992+#include <cstddef>
2993+#include <map>
2994+#include <numeric>
2995+#include <math.h>
2996+#include "../mathutil.hxx"
2997+#include "../array_vector.hxx"
2998+#include "../sized_int.hxx"
2999+#include "../matrix.hxx"
3000+#include "../random.hxx"
3001+#include "../functorexpression.hxx"
3002+#include "rf_nodeproxy.hxx"
3003+//#include "rf_sampling.hxx"
3004+#include "rf_region.hxx"
3005+//#include "../hokashyap.hxx"
3006+//#include "vigra/rf_helpers.hxx"
3007+
3008+namespace vigra
3009+{
3010+
3011+// Incomplete Class to ensure that findBestSplit is always implemented in
3012+// the derived classes of SplitBase
3013+class CompileTimeError;
3014+
3015+
3016+namespace detail
3017+{
3018+ template<class Tag>
3019+ class Normalise
3020+ {
3021+ public:
3022+ template<class Iter>
3023+ static void exec(Iter begin, Iter end)
3024+ {}
3025+ };
3026+
3027+ template<>
3028+ class Normalise<ClassificationTag>
3029+ {
3030+ public:
3031+ template<class Iter>
3032+ static void exec (Iter begin, Iter end)
3033+ {
3034+ double bla = std::accumulate(begin, end, 0.0);
3035+ for(int ii = 0; ii < end - begin; ++ii)
3036+ begin[ii] = begin[ii]/bla ;
3037+ }
3038+ };
3039+}
3040+
3041+
3042+/** Base Class for all SplitFunctors used with the \ref RandomForest class
3043+ defines the interface used while learning a tree.
3044+**/
3045+template<class Tag>
3046+class SplitBase
3047+{
3048+ public:
3049+
3050+ typedef Tag RF_Tag;
3051+ typedef DT_StackEntry<ArrayVectorView<Int32>::iterator>
3052+ StackEntry_t;
3053+
3054+ ProblemSpec<> ext_param_;
3055+
3056+ NodeBase::T_Container_type t_data;
3057+ NodeBase::P_Container_type p_data;
3058+
3059+ NodeBase node_;
3060+
3061+ /** returns the DecisionTree Node created by
3062+ \ref findBestSplit or \ref makeTerminalNode.
3063+ **/
3064+
3065+ template<class T>
3066+ void set_external_parameters(ProblemSpec<T> const & in)
3067+ {
3068+ ext_param_ = in;
3069+ t_data.push_back(in.column_count_);
3070+ t_data.push_back(in.class_count_);
3071+ }
3072+
3073+ NodeBase & createNode()
3074+ {
3075+ return node_;
3076+ }
3077+
3078+ int classCount() const
3079+ {
3080+ return int(t_data[1]);
3081+ }
3082+
3083+ int featureCount() const
3084+ {
3085+ return int(t_data[0]);
3086+ }
3087+
3088+ /** resets internal data. Should always be called before
3089+ calling findBestSplit or makeTerminalNode
3090+ **/
3091+ void reset()
3092+ {
3093+ t_data.resize(2);
3094+ p_data.resize(0);
3095+ }
3096+
3097+
3098+ /** findBestSplit has to be implemented in derived split functor.
3099+ these functions only insures That a CompileTime error is issued
3100+ if no such method was defined.
3101+ **/
3102+
3103+ template<class T, class C, class T2, class C2, class Region, class Random>
3104+ int findBestSplit(MultiArrayView<2, T, C> features,
3105+ MultiArrayView<2, T2, C2> labels,
3106+ Region region,
3107+ ArrayVector<Region> childs,
3108+ Random randint)
3109+ {
3110+ CompileTimeError SplitFunctor__findBestSplit_member_was_not_defined;
3111+ return 0;
3112+ }
3113+
3114+ /** default action for creating a terminal Node.
3115+ sets the Class probability of the remaining region according to
3116+ the class histogram
3117+ **/
3118+ template<class T, class C, class T2,class C2, class Region, class Random>
3119+ int makeTerminalNode(MultiArrayView<2, T, C> features,
3120+ MultiArrayView<2, T2, C2> labels,
3121+ Region & region,
3122+ Random randint)
3123+ {
3124+ Node<e_ConstProbNode> ret(t_data, p_data);
3125+ node_ = ret;
3126+ if(ext_param_.class_weights_.size() != region.classCounts().size())
3127+ {
3128+ std::copy( region.classCounts().begin(),
3129+ region.classCounts().end(),
3130+ ret.prob_begin());
3131+ }
3132+ else
3133+ {
3134+ std::transform( region.classCounts().begin(),
3135+ region.classCounts().end(),
3136+ ext_param_.class_weights_.begin(),
3137+ ret.prob_begin(), std::multiplies<double>());
3138+ }
3139+ detail::Normalise<RF_Tag>::exec(ret.prob_begin(), ret.prob_end());
3140+ ret.weights() = region.size();
3141+ return e_ConstProbNode;
3142+ }
3143+
3144+
3145+};
3146+
3147+/** Functor to sort the indices of a feature Matrix by a certain dimension
3148+**/
3149+template<class DataMatrix>
3150+class SortSamplesByDimensions
3151+{
3152+ DataMatrix const & data_;
3153+ MultiArrayIndex sortColumn_;
3154+ double thresVal_;
3155+ public:
3156+
3157+ SortSamplesByDimensions(DataMatrix const & data,
3158+ MultiArrayIndex sortColumn,
3159+ double thresVal = 0.0)
3160+ : data_(data),
3161+ sortColumn_(sortColumn),
3162+ thresVal_(thresVal)
3163+ {}
3164+
3165+ void setColumn(MultiArrayIndex sortColumn)
3166+ {
3167+ sortColumn_ = sortColumn;
3168+ }
3169+ void setThreshold(double value)
3170+ {
3171+ thresVal_ = value;
3172+ }
3173+
3174+ bool operator()(MultiArrayIndex l, MultiArrayIndex r) const
3175+ {
3176+ return data_(l, sortColumn_) < data_(r, sortColumn_);
3177+ }
3178+ bool operator()(MultiArrayIndex l) const
3179+ {
3180+ return data_(l, sortColumn_) < thresVal_;
3181+ }
3182+};
3183+
3184+template<class DataMatrix>
3185+class DimensionNotEqual
3186+{
3187+ DataMatrix const & data_;
3188+ MultiArrayIndex sortColumn_;
3189+
3190+ public:
3191+
3192+ DimensionNotEqual(DataMatrix const & data,
3193+ MultiArrayIndex sortColumn)
3194+ : data_(data),
3195+ sortColumn_(sortColumn)
3196+ {}
3197+
3198+ void setColumn(MultiArrayIndex sortColumn)
3199+ {
3200+ sortColumn_ = sortColumn;
3201+ }
3202+
3203+ bool operator()(MultiArrayIndex l, MultiArrayIndex r) const
3204+ {
3205+ return data_(l, sortColumn_) != data_(r, sortColumn_);
3206+ }
3207+};
3208+
3209+template<class DataMatrix>
3210+class SortSamplesByHyperplane
3211+{
3212+ DataMatrix const & data_;
3213+ Node<i_HyperplaneNode> const & node_;
3214+
3215+ public:
3216+
3217+ SortSamplesByHyperplane(DataMatrix const & data,
3218+ Node<i_HyperplaneNode> const & node)
3219+ :
3220+ data_(data),
3221+ node_()
3222+ {}
3223+
3224+ /** calculate the distance of a sample point to a hyperplane
3225+ */
3226+ double operator[](MultiArrayIndex l) const
3227+ {
3228+ double result_l = -1 * node_.intercept();
3229+ for(int ii = 0; ii < node_.columns_size(); ++ii)
3230+ {
3231+ result_l += rowVector(data_, l)[node_.columns_begin()[ii]]
3232+ * node_.weights()[ii];
3233+ }
3234+ return result_l;
3235+ }
3236+
3237+ bool operator()(MultiArrayIndex l, MultiArrayIndex r) const
3238+ {
3239+ return (*this)[l] < (*this)[r];
3240+ }
3241+
3242+};
3243+
3244+/** makes a Class Histogram given indices in a labels_ array
3245+ * usage:
3246+ * MultiArrayView<2, T2, C2> labels = makeSomeLabels()
3247+ * ArrayVector<int> hist(numberOfLabels(labels), 0);
3248+ * RandomForestClassCounter<T2, C2, ArrayVector> counter(labels, hist);
3249+ *
3250+ * Container<int> indices = getSomeIndices()
3251+ * std::for_each(indices, counter);
3252+ */
3253+template <class DataSource, class CountArray>
3254+class RandomForestClassCounter
3255+{
3256+ DataSource const & labels_;
3257+ CountArray & counts_;
3258+
3259+ public:
3260+
3261+ RandomForestClassCounter(DataSource const & labels,
3262+ CountArray & counts)
3263+ : labels_(labels),
3264+ counts_(counts)
3265+ {
3266+ reset();
3267+ }
3268+
3269+ void reset()
3270+ {
3271+ counts_.init(0);
3272+ }
3273+
3274+ void operator()(MultiArrayIndex l) const
3275+ {
3276+ counts_[labels_[l]] +=1;
3277+ }
3278+};
3279+
3280+
3281+/** Functor To Calculate the Best possible Split Based on the Gini Index
3282+ given Labels and Features along a given Axis
3283+*/
3284+
3285+namespace detail
3286+{
3287+ template<int N>
3288+ class ConstArr
3289+ {
3290+ public:
3291+ double operator[](size_t) const
3292+ {
3293+ return (double)N;
3294+ }
3295+ };
3296+
3297+
3298+}
3299+
3300+
3301+
3302+
3303+/** Functor to calculate the entropy based impurity
3304+ */
3305+class EntropyCriterion
3306+{
3307+public:
3308+ /**caculate the weighted gini impurity based on class histogram
3309+ * and class weights
3310+ */
3311+ template<class Array, class Array2>
3312+ double operator() (Array const & hist,
3313+ Array2 const & weights,
3314+ double total = 1.0) const
3315+ {
3316+ return impurity(hist, weights, total);
3317+ }
3318+
3319+ /** calculate the gini based impurity based on class histogram
3320+ */
3321+ template<class Array>
3322+ double operator()(Array const & hist, double total = 1.0) const
3323+ {
3324+ return impurity(hist, total);
3325+ }
3326+
3327+ /** static version of operator(hist total)
3328+ */
3329+ template<class Array>
3330+ static double impurity(Array const & hist, double total)
3331+ {
3332+ return impurity(hist, detail::ConstArr<1>(), total);
3333+ }
3334+
3335+ /** static version of operator(hist, weights, total)
3336+ */
3337+ template<class Array, class Array2>
3338+ static double impurity (Array const & hist,
3339+ Array2 const & weights,
3340+ double total)
3341+ {
3342+
3343+ int class_count = hist.size();
3344+ double entropy = 0.0;
3345+ if(class_count == 2)
3346+ {
3347+ double p0 = (hist[0]/total);
3348+ double p1 = (hist[1]/total);
3349+ entropy = 0 - weights[0]*p0*std::log(p0) - weights[1]*p1*std::log(p1);
3350+ }
3351+ else
3352+ {
3353+ for(int ii = 0; ii < class_count; ++ii)
3354+ {
3355+ double w = weights[ii];
3356+ double pii = hist[ii]/total;
3357+ entropy -= w*( pii*std::log(pii));
3358+ }
3359+ }
3360+ entropy = total * entropy;
3361+ return entropy;
3362+ }
3363+};
3364+
3365+/** Functor to calculate the gini impurity
3366+ */
3367+class GiniCriterion
3368+{
3369+public:
3370+ /**caculate the weighted gini impurity based on class histogram
3371+ * and class weights
3372+ */
3373+ template<class Array, class Array2>
3374+ double operator() (Array const & hist,
3375+ Array2 const & weights,
3376+ double total = 1.0) const
3377+ {
3378+ return impurity(hist, weights, total);
3379+ }
3380+
3381+ /** calculate the gini based impurity based on class histogram
3382+ */
3383+ template<class Array>
3384+ double operator()(Array const & hist, double total = 1.0) const
3385+ {
3386+ return impurity(hist, total);
3387+ }
3388+
3389+ /** static version of operator(hist total)
3390+ */
3391+ template<class Array>
3392+ static double impurity(Array const & hist, double total)
3393+ {
3394+ return impurity(hist, detail::ConstArr<1>(), total);
3395+ }
3396+
3397+ /** static version of operator(hist, weights, total)
3398+ */
3399+ template<class Array, class Array2>
3400+ static double impurity (Array const & hist,
3401+ Array2 const & weights,
3402+ double total)
3403+ {
3404+
3405+ int class_count = hist.size();
3406+ double gini = 0.0;
3407+ if(class_count == 2)
3408+ {
3409+ double w = weights[0] * weights[1];
3410+ gini = w * (hist[0] * hist[1] / total);
3411+ }
3412+ else
3413+ {
3414+ for(int ii = 0; ii < class_count; ++ii)
3415+ {
3416+ double w = weights[ii];
3417+ gini += w*( hist[ii]*( 1.0 - w * hist[ii]/total ) );
3418+ }
3419+ }
3420+ return gini;
3421+ }
3422+};
3423+
3424+
3425+template <class DataSource, class Impurity= GiniCriterion>
3426+class ImpurityLoss
3427+{
3428+
3429+ DataSource const & labels_;
3430+ ArrayVector<double> counts_;
3431+ ArrayVector<double> const class_weights_;
3432+ double total_counts_;
3433+ Impurity impurity_;
3434+
3435+ public:
3436+
3437+ template<class T>
3438+ ImpurityLoss(DataSource const & labels,
3439+ ProblemSpec<T> const & ext_)
3440+ : labels_(labels),
3441+ counts_(ext_.class_count_, 0.0),
3442+ class_weights_(ext_.class_weights_),
3443+ total_counts_(0.0)
3444+ {}
3445+
3446+ void reset()
3447+ {
3448+ counts_.init(0);
3449+ total_counts_ = 0.0;
3450+ }
3451+
3452+ template<class Counts>
3453+ double increment_histogram(Counts const & counts)
3454+ {
3455+ std::transform(counts.begin(), counts.end(),
3456+ counts_.begin(), counts_.begin(),
3457+ std::plus<double>());
3458+ total_counts_ = std::accumulate( counts_.begin(),
3459+ counts_.end(),
3460+ 0.0);
3461+ return impurity_(counts_, class_weights_, total_counts_);
3462+ }
3463+
3464+ template<class Counts>
3465+ double decrement_histogram(Counts const & counts)
3466+ {
3467+ std::transform(counts.begin(), counts.end(),
3468+ counts_.begin(), counts_.begin(),
3469+ std::minus<double>());
3470+ total_counts_ = std::accumulate( counts_.begin(),
3471+ counts_.end(),
3472+ 0.0);
3473+ return impurity_(counts_, class_weights_, total_counts_);
3474+ }
3475+
3476+ template<class Iter>
3477+ double increment(Iter begin, Iter end)
3478+ {
3479+ for(Iter iter = begin; iter != end; ++iter)
3480+ {
3481+ counts_[labels_(*iter, 0)] +=1.0;
3482+ total_counts_ +=1.0;
3483+ }
3484+ return impurity_(counts_, class_weights_, total_counts_);
3485+ }
3486+
3487+ template<class Iter>
3488+ double decrement(Iter const & begin, Iter const & end)
3489+ {
3490+ for(Iter iter = begin; iter != end; ++iter)
3491+ {
3492+ counts_[labels_(*iter,0)] -=1.0;
3493+ total_counts_ -=1.0;
3494+ }
3495+ return impurity_(counts_, class_weights_, total_counts_);
3496+ }
3497+
3498+ template<class Iter, class Resp_t>
3499+ double init (Iter begin, Iter end, Resp_t resp)
3500+ {
3501+ reset();
3502+ std::copy(resp.begin(), resp.end(), counts_.begin());
3503+ total_counts_ = std::accumulate(counts_.begin(), counts_.end(), 0.0);
3504+ return impurity_(counts_,class_weights_, total_counts_);
3505+ }
3506+
3507+ ArrayVector<double> const & response()
3508+ {
3509+ return counts_;
3510+ }
3511+};
3512+
3513+template <class DataSource>
3514+class RegressionForestCounter
3515+{
3516+ typedef MultiArrayShape<2>::type Shp;
3517+ DataSource const & labels_;
3518+ ArrayVector <double> mean_;
3519+ ArrayVector <double> variance_;
3520+ ArrayVector <double> tmp_;
3521+ size_t count_;
3522+
3523+ template<class T>
3524+ RegressionForestCounter(DataSource const & labels,
3525+ ProblemSpec<T> const & ext_)
3526+ :
3527+ labels_(labels),
3528+ mean_(ext_.response_size, 0.0),
3529+ variance_(ext_.response_size, 0.0),
3530+ tmp_(ext_.response_size),
3531+ count_(0)
3532+ {}
3533+
3534+ // west's alorithm for incremental variance
3535+ // calculation
3536+ template<class Iter>
3537+ double increment (Iter begin, Iter end)
3538+ {
3539+ for(Iter iter = begin; iter != end; ++iter)
3540+ {
3541+ ++count_;
3542+ for(int ii = 0; ii < mean_.size(); ++ii)
3543+ tmp_[ii] = labels_(*iter, ii) - mean_[ii];
3544+ double f = 1.0 / count_,
3545+ f1 = 1.0 - f;
3546+ for(int ii = 0; ii < mean_.size(); ++ii)
3547+ mean_[ii] += f*tmp_[ii];
3548+ for(int ii = 0; ii < mean_.size(); ++ii)
3549+ variance_[ii] += f1*sq(tmp_[ii]);
3550+ }
3551+ return std::accumulate(variance_.begin(),
3552+ variance_.end(),
3553+ 0.0,
3554+ std::plus<double>())
3555+ /(count_ -1);
3556+ }
3557+
3558+ template<class Iter>
3559+ double decrement (Iter begin, Iter end)
3560+ {
3561+ for(Iter iter = begin; iter != end; ++iter)
3562+ {
3563+ --count_;
3564+ for(int ii = 0; ii < mean_.size(); ++ii)
3565+ tmp_[ii] = labels_(*iter, ii) - mean_[ii];
3566+ double f = 1.0 / count_,
3567+ f1 = 1.0 + f;
3568+ for(int ii = 0; ii < mean_.size(); ++ii)
3569+ mean_[ii] -= f*tmp_[ii];
3570+ for(int ii = 0; ii < mean_.size(); ++ii)
3571+ variance_[ii] -= f1*sq(tmp_[ii]);
3572+ }
3573+ return std::accumulate(variance_.begin(),
3574+ variance_.end(),
3575+ 0.0,
3576+ std::plus<double>())
3577+ /(count_ -1);
3578+ }
3579+
3580+ template<class Iter, class Resp_t>
3581+ double init (Iter begin, Iter end, Resp_t resp)
3582+ {
3583+ reset();
3584+ return increment(begin, end);
3585+ }
3586+
3587+
3588+ ArrayVector<double> const & response()
3589+ {
3590+ return mean_;
3591+ }
3592+
3593+ void reset()
3594+ {
3595+ mean_.init(0.0);
3596+ variance_.init(0.0);
3597+ count_ = 0;
3598+ }
3599+};
3600+
3601+template<class Tag, class Datatyp>
3602+struct LossTraits;
3603+
3604+struct LSQLoss
3605+{};
3606+
3607+template<class Datatype>
3608+struct LossTraits<GiniCriterion, Datatype>
3609+{
3610+ typedef ImpurityLoss<Datatype, GiniCriterion> type;
3611+};
3612+
3613+template<class Datatype>
3614+struct LossTraits<EntropyCriterion, Datatype>
3615+{
3616+ typedef ImpurityLoss<Datatype, EntropyCriterion> type;
3617+};
3618+
3619+template<class Datatype>
3620+struct LossTraits<LSQLoss, Datatype>
3621+{
3622+ typedef RegressionForestCounter<Datatype> type;
3623+};
3624+
3625+/** Given a column, choose a split that minimizes some loss
3626+ */
3627+template<class LineSearchLossTag>
3628+class BestGiniOfColumn
3629+{
3630+public:
3631+ ArrayVector<double> class_weights_;
3632+ ArrayVector<double> bestCurrentCounts[2];
3633+ double min_gini_;
3634+ ptrdiff_t min_index_;
3635+ double min_threshold_;
3636+ ProblemSpec<> ext_param_;
3637+
3638+ BestGiniOfColumn()
3639+ {}
3640+
3641+ template<class T>
3642+ BestGiniOfColumn(ProblemSpec<T> const & ext)
3643+ :
3644+ class_weights_(ext.class_weights_),
3645+ ext_param_(ext)
3646+ {
3647+ bestCurrentCounts[0].resize(ext.class_count_);
3648+ bestCurrentCounts[1].resize(ext.class_count_);
3649+ }
3650+ template<class T>
3651+ void set_external_parameters(ProblemSpec<T> const & ext)
3652+ {
3653+ class_weights_ = ext.class_weights_;
3654+ ext_param_ = ext;
3655+ bestCurrentCounts[0].resize(ext.class_count_);
3656+ bestCurrentCounts[1].resize(ext.class_count_);
3657+ }
3658+ /** calculate the best gini split along a Feature Column
3659+ * \param column, the feature vector - has to support the [] operator
3660+ * \param labels, the label vector
3661+ * \param begin
3662+ * \param end (in and out)
3663+ * begin and end iterators to the indices of the
3664+ * samples in the current region.
3665+ * the range begin - end is sorted by the column supplied
3666+ * during function execution.
3667+ * \param class_counts
3668+ * class histogram of the range.
3669+ *
3670+ * precondition: begin, end valid range,
3671+ * class_counts positive integer valued array with the
3672+ * class counts in the current range.
3673+ * labels.size() >= max(begin, end);
3674+ * postcondition:
3675+ * begin, end sorted by column given.
3676+ * min_gini_ contains the minimum gini found or
3677+ * NumericTraits<double>::max if no split was found.
3678+ * min_index_ countains the splitting index in the range
3679+ * or invalid data if no split was found.
3680+ * BestCirremtcounts[0] and [1] contain the
3681+ * class histogram of the left and right region of
3682+ * the left and right regions.
3683+ */
3684+ template< class DataSourceF_t,
3685+ class DataSource_t,
3686+ class I_Iter,
3687+ class Array>
3688+ void operator()(DataSourceF_t const & column,
3689+ int g,
3690+ DataSource_t const & labels,
3691+ I_Iter & begin,
3692+ I_Iter & end,
3693+ Array const & region_response)
3694+ {
3695+ std::sort(begin, end,
3696+ SortSamplesByDimensions<DataSourceF_t>(column, g));
3697+ typedef typename
3698+ LossTraits<LineSearchLossTag, DataSource_t>::type LineSearchLoss;
3699+ LineSearchLoss left(labels, ext_param_);
3700+ LineSearchLoss right(labels, ext_param_);
3701+
3702+
3703+
3704+ min_gini_ = right.init(begin, end, region_response);
3705+ min_threshold_ = *begin;
3706+ min_index_ = 0;
3707+ DimensionNotEqual<DataSourceF_t> comp(column, g);
3708+
3709+ I_Iter iter = begin;
3710+ I_Iter next = std::adjacent_find(iter, end, comp);
3711+ while( next != end)
3712+ {
3713+
3714+ double loss = right.decrement(iter, next + 1)
3715+ + left.increment(iter , next + 1);
3716+#ifdef CLASSIFIER_TEST
3717+ if(loss < min_gini_ && !closeAtTolerance(loss, min_gini_))
3718+#else
3719+ if(loss < min_gini_ )
3720+#endif
3721+ {
3722+ bestCurrentCounts[0] = left.response();
3723+ bestCurrentCounts[1] = right.response();
3724+#ifdef CLASSIFIER_TEST
3725+ min_gini_ = loss < min_gini_? loss : min_gini_;
3726+#else
3727+ min_gini_ = loss;
3728+#endif
3729+ min_index_ = next - begin +1 ;
3730+ min_threshold_ = (double(column(*next,g)) + double(column(*(next +1), g)))/2.0;
3731+ }
3732+ iter = next +1 ;
3733+ next = std::adjacent_find(iter, end, comp);
3734+ }
3735+ }
3736+
3737+ template<class DataSource_t, class Iter, class Array>
3738+ double loss_of_region(DataSource_t const & labels,
3739+ Iter & begin,
3740+ Iter & end,
3741+ Array const & region_response) const
3742+ {
3743+ typedef typename
3744+ LossTraits<LineSearchLossTag, DataSource_t>::type LineSearchLoss;
3745+ LineSearchLoss region_loss(labels, ext_param_);
3746+ return
3747+ region_loss.init(begin, end, region_response);
3748+ }
3749+
3750+};
3751+
3752+
3753+/** Chooses mtry columns ad applys ColumnDecisionFunctor to each of the
3754+ * columns. Then Chooses the column that is best
3755+ */
3756+template<class ColumnDecisionFunctor, class Tag = ClassificationTag>
3757+class ThresholdSplit: public SplitBase<Tag>
3758+{
3759+ public:
3760+
3761+
3762+ typedef SplitBase<Tag> SB;
3763+
3764+ ArrayVector<Int32> splitColumns;
3765+ ColumnDecisionFunctor bgfunc;
3766+
3767+ double region_gini_;
3768+ ArrayVector<double> min_gini_;
3769+ ArrayVector<ptrdiff_t> min_indices_;
3770+ ArrayVector<double> min_thresholds_;
3771+
3772+ int bestSplitIndex;
3773+
3774+ double minGini() const
3775+ {
3776+ return min_gini_[bestSplitIndex];
3777+ }
3778+ int bestSplitColumn() const
3779+ {
3780+ return splitColumns[bestSplitIndex];
3781+ }
3782+ double bestSplitThreshold() const
3783+ {
3784+ return min_thresholds_[bestSplitIndex];
3785+ }
3786+
3787+ template<class T>
3788+ void set_external_parameters(ProblemSpec<T> const & in)
3789+ {
3790+ SB::set_external_parameters(in);
3791+ bgfunc.set_external_parameters( SB::ext_param_);
3792+ int featureCount_ = SB::ext_param_.column_count_;
3793+ splitColumns.resize(featureCount_);
3794+ for(int k=0; k<featureCount_; ++k)
3795+ splitColumns[k] = k;
3796+ min_gini_.resize(featureCount_);
3797+ min_indices_.resize(featureCount_);
3798+ min_thresholds_.resize(featureCount_);
3799+ }
3800+
3801+
3802+ template<class T, class C, class T2, class C2, class Region, class Random>
3803+ int findBestSplit(MultiArrayView<2, T, C> features,
3804+ MultiArrayView<2, T2, C2> labels,
3805+ Region & region,
3806+ ArrayVector<Region>& childRegions,
3807+ Random & randint)
3808+ {
3809+
3810+ typedef typename Region::IndexIterator IndexIterator;
3811+ if(region.size() == 0)
3812+ {
3813+ std::cerr << "SplitFunctor::findBestSplit(): stackentry with 0 examples encountered\n"
3814+ "continuing learning process....";
3815+ }
3816+ // calculate things that haven't been calculated yet.
3817+
3818+ if(std::accumulate(region.classCounts().begin(),
3819+ region.classCounts().end(), 0) != region.size())
3820+ {
3821+ RandomForestClassCounter< MultiArrayView<2,T2, C2>,
3822+ ArrayVector<double> >
3823+ counter(labels, region.classCounts());
3824+ std::for_each( region.begin(), region.end(), counter);
3825+ region.classCountsIsValid = true;
3826+ }
3827+
3828+ // Is the region pure already?
3829+ region_gini_ = bgfunc.loss_of_region(labels,
3830+ region.begin(),
3831+ region.end(),
3832+ region.classCounts());
3833+ if(region_gini_ <= SB::ext_param_.precision_)
3834+ return makeTerminalNode(features, labels, region, randint);
3835+
3836+ // select columns to be tried.
3837+ for(int ii = 0; ii < SB::ext_param_.actual_mtry_; ++ii)
3838+ std::swap(splitColumns[ii],
3839+ splitColumns[ii+ randint(features.shape(1) - ii)]);
3840+
3841+ // find the best gini index
3842+ bestSplitIndex = 0;
3843+ double current_min_gini = region_gini_;
3844+ int num2try = features.shape(1);
3845+ for(int k=0; k<num2try; ++k)
3846+ {
3847+ //this functor does all the work
3848+ bgfunc(features,
3849+ splitColumns[k],
3850+ labels,
3851+ region.begin(), region.end(),
3852+ region.classCounts());
3853+ min_gini_[k] = bgfunc.min_gini_;
3854+ min_indices_[k] = bgfunc.min_index_;
3855+ min_thresholds_[k] = bgfunc.min_threshold_;
3856+#ifdef CLASSIFIER_TEST
3857+ if( bgfunc.min_gini_ < current_min_gini
3858+ && !closeAtTolerance(bgfunc.min_gini_, current_min_gini))
3859+#else
3860+ if(bgfunc.min_gini_ < current_min_gini)
3861+#endif
3862+ {
3863+ current_min_gini = bgfunc.min_gini_;
3864+ childRegions[0].classCounts() = bgfunc.bestCurrentCounts[0];
3865+ childRegions[1].classCounts() = bgfunc.bestCurrentCounts[1];
3866+ childRegions[0].classCountsIsValid = true;
3867+ childRegions[1].classCountsIsValid = true;
3868+
3869+ bestSplitIndex = k;
3870+ num2try = SB::ext_param_.actual_mtry_;
3871+ }
3872+ }
3873+
3874+ // did not find any suitable split
3875+ if(closeAtTolerance(current_min_gini, region_gini_))
3876+ return makeTerminalNode(features, labels, region, randint);
3877+
3878+ //create a Node for output
3879+ Node<i_ThresholdNode> node(SB::t_data, SB::p_data);
3880+ SB::node_ = node;
3881+ node.threshold() = min_thresholds_[bestSplitIndex];
3882+ node.column() = splitColumns[bestSplitIndex];
3883+
3884+ // partition the range according to the best dimension
3885+ SortSamplesByDimensions<MultiArrayView<2, T, C> >
3886+ sorter(features, node.column(), node.threshold());
3887+ IndexIterator bestSplit =
3888+ std::partition(region.begin(), region.end(), sorter);
3889+ // Save the ranges of the child stack entries.
3890+ childRegions[0].setRange( region.begin() , bestSplit );
3891+ childRegions[0].rule = region.rule;
3892+ childRegions[0].rule.push_back(std::make_pair(1, 1.0));
3893+ childRegions[1].setRange( bestSplit , region.end() );
3894+ childRegions[1].rule = region.rule;
3895+ childRegions[1].rule.push_back(std::make_pair(1, 1.0));
3896+
3897+ return i_ThresholdNode;
3898+ }
3899+};
3900+
3901+typedef ThresholdSplit<BestGiniOfColumn<GiniCriterion> > GiniSplit;
3902+typedef ThresholdSplit<BestGiniOfColumn<EntropyCriterion> > EntropySplit;
3903+typedef ThresholdSplit<BestGiniOfColumn<LSQLoss>, RegressionTag> RegressionSplit;
3904+
3905+namespace rf
3906+{
3907+
3908+/** This namespace contains additional Splitfunctors.
3909+ *
3910+ * The Split functor classes are designed in a modular fashion because new split functors may
3911+ * share a lot of code with existing ones.
3912+ *
3913+ * ThresholdSplit implements the functionality needed for any split functor, that makes its
3914+ * decision via one dimensional axis-parallel cuts. The Template parameter defines how the split
3915+ * along one dimension is chosen.
3916+ *
3917+ * The BestGiniOfColumn class chooses a split that minimizes one of the Loss functions supplied
3918+ * (GiniCriterion for classification and LSQLoss for regression). Median chooses the Split in a
3919+ * kD tree fashion.
3920+ *
3921+ *
3922+ * Currently defined typedefs:
3923+ * \code
3924+ * typedef ThresholdSplit<BestGiniOfColumn<GiniCriterion> > GiniSplit;
3925+ * typedef ThresholdSplit<BestGiniOfColumn<LSQLoss>, RegressionTag> RegressionSplit;
3926+ * typedef ThresholdSplit<Median> MedianSplit;
3927+ * \endcode
3928+ */
3929+namespace split
3930+{
3931+
3932+/** This Functor chooses the median value of a column
3933+ */
3934+class Median
3935+{
3936+public:
3937+
3938+ typedef GiniCriterion LineSearchLossTag;
3939+ ArrayVector<double> class_weights_;
3940+ ArrayVector<double> bestCurrentCounts[2];
3941+ double min_gini_;
3942+ ptrdiff_t min_index_;
3943+ double min_threshold_;
3944+ ProblemSpec<> ext_param_;
3945+
3946+ Median()
3947+ {}
3948+
3949+ template<class T>
3950+ Median(ProblemSpec<T> const & ext)
3951+ :
3952+ class_weights_(ext.class_weights_),
3953+ ext_param_(ext)
3954+ {
3955+ bestCurrentCounts[0].resize(ext.class_count_);
3956+ bestCurrentCounts[1].resize(ext.class_count_);
3957+ }
3958+
3959+ template<class T>
3960+ void set_external_parameters(ProblemSpec<T> const & ext)
3961+ {
3962+ class_weights_ = ext.class_weights_;
3963+ ext_param_ = ext;
3964+ bestCurrentCounts[0].resize(ext.class_count_);
3965+ bestCurrentCounts[1].resize(ext.class_count_);
3966+ }
3967+
3968+ template< class DataSourceF_t,
3969+ class DataSource_t,
3970+ class I_Iter,
3971+ class Array>
3972+ void operator()(DataSourceF_t const & column,
3973+ DataSource_t const & labels,
3974+ I_Iter & begin,
3975+ I_Iter & end,
3976+ Array const & region_response)
3977+ {
3978+ std::sort(begin, end,
3979+ SortSamplesByDimensions<DataSourceF_t>(column, 0));
3980+ typedef typename
3981+ LossTraits<LineSearchLossTag, DataSource_t>::type LineSearchLoss;
3982+ LineSearchLoss left(labels, ext_param_);
3983+ LineSearchLoss right(labels, ext_param_);
3984+ right.init(begin, end, region_response);
3985+
3986+ min_gini_ = NumericTraits<double>::max();
3987+ min_index_ = floor(double(end - begin)/2.0);
3988+ min_threshold_ = column[*(begin + min_index_)];
3989+ SortSamplesByDimensions<DataSourceF_t>
3990+ sorter(column, 0, min_threshold_);
3991+ I_Iter part = std::partition(begin, end, sorter);
3992+ DimensionNotEqual<DataSourceF_t> comp(column, 0);
3993+ if(part == begin)
3994+ {
3995+ part= std::adjacent_find(part, end, comp)+1;
3996+
3997+ }
3998+ if(part >= end)
3999+ {
4000+ return;
4001+ }
4002+ else
4003+ {
4004+ min_threshold_ = column[*part];
4005+ }
4006+ min_gini_ = right.decrement(begin, part)
4007+ + left.increment(begin , part);
4008+
4009+ bestCurrentCounts[0] = left.response();
4010+ bestCurrentCounts[1] = right.response();
4011+
4012+ min_index_ = part - begin;
4013+ }
4014+
4015+ template<class DataSource_t, class Iter, class Array>
4016+ double loss_of_region(DataSource_t const & labels,
4017+ Iter & begin,
4018+ Iter & end,
4019+ Array const & region_response) const
4020+ {
4021+ typedef typename
4022+ LossTraits<LineSearchLossTag, DataSource_t>::type LineSearchLoss;
4023+ LineSearchLoss region_loss(labels, ext_param_);
4024+ return
4025+ region_loss.init(begin, end, region_response);
4026+ }
4027+
4028+};
4029+
4030+typedef ThresholdSplit<Median> MedianSplit;
4031+
4032+
4033+/** This Functor chooses a random value of a column
4034+ */
4035+class RandomSplitOfColumn
4036+{
4037+public:
4038+
4039+ typedef GiniCriterion LineSearchLossTag;
4040+ ArrayVector<double> class_weights_;
4041+ ArrayVector<double> bestCurrentCounts[2];
4042+ double min_gini_;
4043+ ptrdiff_t min_index_;
4044+ double min_threshold_;
4045+ ProblemSpec<> ext_param_;
4046+ typedef RandomMT19937 Random_t;
4047+ Random_t random;
4048+
4049+ RandomSplitOfColumn()
4050+ {}
4051+
4052+ template<class T>
4053+ RandomSplitOfColumn(ProblemSpec<T> const & ext)
4054+ :
4055+ class_weights_(ext.class_weights_),
4056+ ext_param_(ext),
4057+ random(RandomSeed)
4058+ {
4059+ bestCurrentCounts[0].resize(ext.class_count_);
4060+ bestCurrentCounts[1].resize(ext.class_count_);
4061+ }
4062+
4063+ template<class T>
4064+ RandomSplitOfColumn(ProblemSpec<T> const & ext, Random_t & random_)
4065+ :
4066+ class_weights_(ext.class_weights_),
4067+ ext_param_(ext),
4068+ random(random_)
4069+ {
4070+ bestCurrentCounts[0].resize(ext.class_count_);
4071+ bestCurrentCounts[1].resize(ext.class_count_);
4072+ }
4073+
4074+ template<class T>
4075+ void set_external_parameters(ProblemSpec<T> const & ext)
4076+ {
4077+ class_weights_ = ext.class_weights_;
4078+ ext_param_ = ext;
4079+ bestCurrentCounts[0].resize(ext.class_count_);
4080+ bestCurrentCounts[1].resize(ext.class_count_);
4081+ }
4082+
4083+ template< class DataSourceF_t,
4084+ class DataSource_t,
4085+ class I_Iter,
4086+ class Array>
4087+ void operator()(DataSourceF_t const & column,
4088+ DataSource_t const & labels,
4089+ I_Iter & begin,
4090+ I_Iter & end,
4091+ Array const & region_response)
4092+ {
4093+ std::sort(begin, end,
4094+ SortSamplesByDimensions<DataSourceF_t>(column, 0));
4095+ typedef typename
4096+ LossTraits<LineSearchLossTag, DataSource_t>::type LineSearchLoss;
4097+ LineSearchLoss left(labels, ext_param_);
4098+ LineSearchLoss right(labels, ext_param_);
4099+ right.init(begin, end, region_response);
4100+
4101+
4102+ min_gini_ = NumericTraits<double>::max();
4103+
4104+ min_index_ = begin + random.uniformInt(end -begin);
4105+ min_threshold_ = column[*(begin + min_index_)];
4106+ SortSamplesByDimensions<DataSourceF_t>
4107+ sorter(column, 0, min_threshold_);
4108+ I_Iter part = std::partition(begin, end, sorter);
4109+ DimensionNotEqual<DataSourceF_t> comp(column, 0);
4110+ if(part == begin)
4111+ {
4112+ part= std::adjacent_find(part, end, comp)+1;
4113+
4114+ }
4115+ if(part >= end)
4116+ {
4117+ return;
4118+ }
4119+ else
4120+ {
4121+ min_threshold_ = column[*part];
4122+ }
4123+ min_gini_ = right.decrement(begin, part)
4124+ + left.increment(begin , part);
4125+
4126+ bestCurrentCounts[0] = left.response();
4127+ bestCurrentCounts[1] = right.response();
4128+
4129+ min_index_ = part - begin;
4130+ }
4131+
4132+ template<class DataSource_t, class Iter, class Array>
4133+ double loss_of_region(DataSource_t const & labels,
4134+ Iter & begin,
4135+ Iter & end,
4136+ Array const & region_response) const
4137+ {
4138+ typedef typename
4139+ LossTraits<LineSearchLossTag, DataSource_t>::type LineSearchLoss;
4140+ LineSearchLoss region_loss(labels, ext_param_);
4141+ return
4142+ region_loss.init(begin, end, region_response);
4143+ }
4144+
4145+};
4146+
4147+typedef ThresholdSplit<RandomSplitOfColumn> RandomSplit;
4148+}
4149+}
4150+
4151+
4152+} //namespace vigra
4153+#endif // VIGRA_RANDOM_FOREST_SPLIT_HXX
4154
4155=== removed directory '.pc/sizeof_ldbl_not_sizeof_dbl.diff'
4156=== removed directory '.pc/sizeof_ldbl_not_sizeof_dbl.diff/include'
4157=== removed directory '.pc/sizeof_ldbl_not_sizeof_dbl.diff/include/vigra'
4158=== removed file '.pc/sizeof_ldbl_not_sizeof_dbl.diff/include/vigra/numpy_array.hxx'
4159--- .pc/sizeof_ldbl_not_sizeof_dbl.diff/include/vigra/numpy_array.hxx 2011-11-08 19:31:51 +0000
4160+++ .pc/sizeof_ldbl_not_sizeof_dbl.diff/include/vigra/numpy_array.hxx 1970-01-01 00:00:00 +0000
4161@@ -1,1918 +0,0 @@
4162-/************************************************************************/
4163-/* */
4164-/* Copyright 2009 by Ullrich Koethe and Hans Meine */
4165-/* */
4166-/* This file is part of the VIGRA computer vision library. */
4167-/* The VIGRA Website is */
4168-/* http://hci.iwr.uni-heidelberg.de/vigra/ */
4169-/* Please direct questions, bug reports, and contributions to */
4170-/* ullrich.koethe@iwr.uni-heidelberg.de or */
4171-/* vigra@informatik.uni-hamburg.de */
4172-/* */
4173-/* Permission is hereby granted, free of charge, to any person */
4174-/* obtaining a copy of this software and associated documentation */
4175-/* files (the "Software"), to deal in the Software without */
4176-/* restriction, including without limitation the rights to use, */
4177-/* copy, modify, merge, publish, distribute, sublicense, and/or */
4178-/* sell copies of the Software, and to permit persons to whom the */
4179-/* Software is furnished to do so, subject to the following */
4180-/* conditions: */
4181-/* */
4182-/* The above copyright notice and this permission notice shall be */
4183-/* included in all copies or substantial portions of the */
4184-/* Software. */
4185-/* */
4186-/* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND */
4187-/* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES */
4188-/* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND */
4189-/* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT */
4190-/* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, */
4191-/* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING */
4192-/* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR */
4193-/* OTHER DEALINGS IN THE SOFTWARE. */
4194-/* */
4195-/************************************************************************/
4196-
4197-#ifndef VIGRA_NUMPY_ARRAY_HXX
4198-#define VIGRA_NUMPY_ARRAY_HXX
4199-
4200-#include <Python.h>
4201-#include <iostream>
4202-#include <algorithm>
4203-#include <complex>
4204-#include <string>
4205-#include <sstream>
4206-#include <map>
4207-#include <vigra/multi_array.hxx>
4208-#include <vigra/array_vector.hxx>
4209-#include <vigra/sized_int.hxx>
4210-#include <vigra/python_utility.hxx>
4211-#include <numpy/arrayobject.h>
4212-
4213-int _import_array();
4214-
4215-namespace vigra {
4216-
4217-/********************************************************/
4218-/* */
4219-/* Singleband and Multiband */
4220-/* */
4221-/********************************************************/
4222-
4223-typedef float NumpyValueType;
4224-
4225-template <class T>
4226-struct Singleband // the last array dimension is not to be interpreted as a channel dimension
4227-{
4228- typedef T value_type;
4229-};
4230-
4231-template <class T>
4232-struct Multiband // the last array dimension is a channel dimension
4233-{
4234- typedef T value_type;
4235-};
4236-
4237-template<class T>
4238-struct NumericTraits<Singleband<T> >
4239-: public NumericTraits<T>
4240-{};
4241-
4242-template<class T>
4243-struct NumericTraits<Multiband<T> >
4244-{
4245- typedef Multiband<T> Type;
4246-/*
4247- typedef int Promote;
4248- typedef unsigned int UnsignedPromote;
4249- typedef double RealPromote;
4250- typedef std::complex<RealPromote> ComplexPromote;
4251-*/
4252- typedef Type ValueType;
4253-
4254- typedef typename NumericTraits<T>::isIntegral isIntegral;
4255- typedef VigraFalseType isScalar;
4256- typedef typename NumericTraits<T>::isSigned isSigned;
4257- typedef typename NumericTraits<T>::isSigned isOrdered;
4258- typedef typename NumericTraits<T>::isSigned isComplex;
4259-/*
4260- static signed char zero() { return 0; }
4261- static signed char one() { return 1; }
4262- static signed char nonZero() { return 1; }
4263- static signed char min() { return SCHAR_MIN; }
4264- static signed char max() { return SCHAR_MAX; }
4265-
4266-#ifdef NO_INLINE_STATIC_CONST_DEFINITION
4267- enum { minConst = SCHAR_MIN, maxConst = SCHAR_MIN };
4268-#else
4269- static const signed char minConst = SCHAR_MIN;
4270- static const signed char maxConst = SCHAR_MIN;
4271-#endif
4272-
4273- static Promote toPromote(signed char v) { return v; }
4274- static RealPromote toRealPromote(signed char v) { return v; }
4275- static signed char fromPromote(Promote v) {
4276- return ((v < SCHAR_MIN) ? SCHAR_MIN : (v > SCHAR_MAX) ? SCHAR_MAX : v);
4277- }
4278- static signed char fromRealPromote(RealPromote v) {
4279- return ((v < 0.0)
4280- ? ((v < (RealPromote)SCHAR_MIN)
4281- ? SCHAR_MIN
4282- : static_cast<signed char>(v - 0.5))
4283- : (v > (RealPromote)SCHAR_MAX)
4284- ? SCHAR_MAX
4285- : static_cast<signed char>(v + 0.5));
4286- }
4287-*/
4288-};
4289-
4290-template <class T>
4291-class MultibandVectorAccessor
4292-{
4293- MultiArrayIndex size_, stride_;
4294-
4295- public:
4296- MultibandVectorAccessor(MultiArrayIndex size, MultiArrayIndex stride)
4297- : size_(size),
4298- stride_(stride)
4299- {}
4300-
4301-
4302- typedef Multiband<T> value_type;
4303-
4304- /** the vector's value_type
4305- */
4306- typedef T component_type;
4307-
4308- typedef VectorElementAccessor<MultibandVectorAccessor<T> > ElementAccessor;
4309-
4310- /** Read the component data at given vector index
4311- at given iterator position
4312- */
4313- template <class ITERATOR>
4314- component_type const & getComponent(ITERATOR const & i, int idx) const
4315- {
4316- return *(&*i+idx*stride_);
4317- }
4318-
4319- /** Set the component data at given vector index
4320- at given iterator position. The type <TT>V</TT> of the passed
4321- in <TT>value</TT> is automatically converted to <TT>component_type</TT>.
4322- In case of a conversion floating point -> intergral this includes rounding and clipping.
4323- */
4324- template <class V, class ITERATOR>
4325- void setComponent(V const & value, ITERATOR const & i, int idx) const
4326- {
4327- *(&*i+idx*stride_) = detail::RequiresExplicitCast<component_type>::cast(value);
4328- }
4329-
4330- /** Read the component data at given vector index
4331- at an offset of given iterator position
4332- */
4333- template <class ITERATOR, class DIFFERENCE>
4334- component_type const & getComponent(ITERATOR const & i, DIFFERENCE const & diff, int idx) const
4335- {
4336- return *(&i[diff]+idx*stride_);
4337- }
4338-
4339- /** Set the component data at given vector index
4340- at an offset of given iterator position. The type <TT>V</TT> of the passed
4341- in <TT>value</TT> is automatically converted to <TT>component_type</TT>.
4342- In case of a conversion floating point -> intergral this includes rounding and clipping.
4343- */
4344- template <class V, class ITERATOR, class DIFFERENCE>
4345- void
4346- setComponent(V const & value, ITERATOR const & i, DIFFERENCE const & diff, int idx) const
4347- {
4348- *(&i[diff]+idx*stride_) = detail::RequiresExplicitCast<component_type>::cast(value);
4349- }
4350-
4351- template <class U>
4352- MultiArrayIndex size(U) const
4353- {
4354- return size_;
4355- }
4356-};
4357-
4358-/********************************************************/
4359-/* */
4360-/* a few Python utilities */
4361-/* */
4362-/********************************************************/
4363-
4364-namespace detail {
4365-
4366-inline long spatialDimensions(PyObject * obj)
4367-{
4368- static python_ptr key(PyString_FromString("spatialDimensions"), python_ptr::keep_count);
4369- python_ptr pres(PyObject_GetAttr(obj, key), python_ptr::keep_count);
4370- long res = pres && PyInt_Check(pres)
4371- ? PyInt_AsLong(pres)
4372- : -1;
4373- return res;
4374-}
4375-
4376-/*
4377- * The registry is used to optionally map specific C++ types to
4378- * specific python sub-classes of numpy.ndarray (for example,
4379- * MultiArray<2, Singleband<int> > to a user-defined Python class 'ScalarImage').
4380- *
4381- * One needs to use NUMPY_ARRAY_INITIALIZE_REGISTRY once in a python
4382- * extension module using this technique, in order to actually provide
4383- * the registry (this is done by vigranumpycmodule and will then be
4384- * available for other modules, too). Alternatively,
4385- * NUMPY_ARRAY_DUMMY_REGISTRY may be used to disable this feature
4386- * completely. In both cases, the macro must not be enclosed by any
4387- * namespace, so it is best put right at the beginning of the file
4388- * (e.g. below the #includes).
4389- */
4390-
4391-typedef std::map<std::string, std::pair<python_ptr, python_ptr> > ArrayTypeMap;
4392-
4393-VIGRA_EXPORT ArrayTypeMap * getArrayTypeMap();
4394-
4395-#define NUMPY_ARRAY_INITIALIZE_REGISTRY \
4396- namespace vigra { namespace detail { \
4397- ArrayTypeMap * getArrayTypeMap() \
4398- { \
4399- static ArrayTypeMap arrayTypeMap; \
4400- return &arrayTypeMap; \
4401- } \
4402- }} // namespace vigra::detail
4403-
4404-#define NUMPY_ARRAY_DUMMY_REGISTRY \
4405- namespace vigra { namespace detail { \
4406- ArrayTypeMap * getArrayTypeMap() \
4407- { \
4408- return NULL; \
4409- } \
4410- }} // namespace vigra::detail
4411-
4412-inline
4413-void registerPythonArrayType(std::string const & name, PyObject * obj, PyObject * typecheck)
4414-{
4415- ArrayTypeMap *types = getArrayTypeMap();
4416- vigra_precondition(
4417- types != NULL,
4418- "registerPythonArrayType(): module was compiled without array type registry.");
4419- vigra_precondition(
4420- obj && PyType_Check(obj) && PyType_IsSubtype((PyTypeObject *)obj, &PyArray_Type),
4421- "registerPythonArrayType(obj): obj is not a subtype of numpy.ndarray.");
4422- if(typecheck && PyCallable_Check(typecheck))
4423- (*types)[name] = std::make_pair(python_ptr(obj), python_ptr(typecheck));
4424- else
4425- (*types)[name] = std::make_pair(python_ptr(obj), python_ptr());
4426-// std::cerr << "Registering " << ((PyTypeObject *)obj)->tp_name << " for " << name << "\n";
4427-}
4428-
4429-inline
4430-python_ptr getArrayTypeObject(std::string const & name, PyTypeObject * def = 0)
4431-{
4432- ArrayTypeMap *types = getArrayTypeMap();
4433- if(!types)
4434- // dummy registry -> handle like empty registry
4435- return python_ptr((PyObject *)def);
4436-
4437- python_ptr res;
4438- ArrayTypeMap::iterator i = types->find(name);
4439- if(i != types->end())
4440- res = i->second.first;
4441- else
4442- res = python_ptr((PyObject *)def);
4443-// std::cerr << "Requested " << name << ", got " << ((PyTypeObject *)res.get())->tp_name << "\n";
4444- return res;
4445-}
4446-
4447-// there are two cases for the return:
4448-// * if a typecheck function was registered, it is returned
4449-// * a null pointer is returned if nothing was registered for either key, or if
4450-// a type was registered without typecheck function
4451-inline python_ptr
4452-getArrayTypecheckFunction(std::string const & keyFull, std::string const & key)
4453-{
4454- python_ptr res;
4455- ArrayTypeMap *types = getArrayTypeMap();
4456- if(types)
4457- {
4458- ArrayTypeMap::iterator i = types->find(keyFull);
4459- if(i == types->end())
4460- i = types->find(key);
4461- if(i != types->end())
4462- res = i->second.second;
4463- }
4464- return res;
4465-}
4466-
4467-inline bool
4468-performCustomizedArrayTypecheck(PyObject * obj, std::string const & keyFull, std::string const & key)
4469-{
4470- if(obj == 0 || !PyArray_Check(obj))
4471- return false;
4472- python_ptr typecheck = getArrayTypecheckFunction(keyFull, key);
4473- if(typecheck == 0)
4474- return true; // no custom test registered
4475- python_ptr args(PyTuple_Pack(1, obj), python_ptr::keep_count);
4476- pythonToCppException(args);
4477- python_ptr res(PyObject_Call(typecheck.get(), args.get(), 0), python_ptr::keep_count);
4478- pythonToCppException(res);
4479- vigra_precondition(PyBool_Check(res),
4480- "NumpyArray conversion: registered typecheck function did not return a boolean.");
4481- return (void*)res.get() == (void*)Py_True;
4482-}
4483-
4484-inline
4485-python_ptr constructNumpyArrayImpl(
4486- PyTypeObject * type,
4487- ArrayVector<npy_intp> const & shape, npy_intp *strides,
4488- NPY_TYPES typeCode, bool init)
4489-{
4490- python_ptr array;
4491-
4492- if(strides == 0)
4493- {
4494- array = python_ptr(PyArray_New(type, shape.size(), (npy_intp *)shape.begin(), typeCode, 0, 0, 0, 1 /* Fortran order */, 0),
4495- python_ptr::keep_count);
4496- }
4497- else
4498- {
4499- int N = shape.size();
4500- ArrayVector<npy_intp> pshape(N);
4501- for(int k=0; k<N; ++k)
4502- pshape[strides[k]] = shape[k];
4503-
4504- array = python_ptr(PyArray_New(type, N, pshape.begin(), typeCode, 0, 0, 0, 1 /* Fortran order */, 0),
4505- python_ptr::keep_count);
4506- pythonToCppException(array);
4507-
4508- PyArray_Dims permute = { strides, N };
4509- array = python_ptr(PyArray_Transpose((PyArrayObject*)array.get(), &permute), python_ptr::keep_count);
4510- }
4511- pythonToCppException(array);
4512-
4513- if(init)
4514- PyArray_FILLWBYTE((PyArrayObject *)array.get(), 0);
4515-
4516- return array;
4517-}
4518-
4519-// strideOrdering will be ignored unless order == "A"
4520-// TODO: this function should receive some refactoring in order to make
4521-// the rules clear from the code rather than from comments
4522-inline python_ptr
4523-constructNumpyArrayImpl(PyTypeObject * type, ArrayVector<npy_intp> const & shape,
4524- unsigned int spatialDimensions, unsigned int channels,
4525- NPY_TYPES typeCode, std::string order, bool init,
4526- ArrayVector<npy_intp> strideOrdering = ArrayVector<npy_intp>())
4527-{
4528- // shape must have at least length spatialDimensions, but can also have a channel dimension
4529- vigra_precondition(shape.size() == spatialDimensions || shape.size() == spatialDimensions + 1,
4530- "constructNumpyArray(type, shape, ...): shape has wrong length.");
4531-
4532- // if strideOrdering is given, it must have at least length spatialDimensions,
4533- // but can also have a channel dimension
4534- vigra_precondition(strideOrdering.size() == 0 || strideOrdering.size() == spatialDimensions ||
4535- strideOrdering.size() == spatialDimensions + 1,
4536- "constructNumpyArray(type, ..., strideOrdering): strideOrdering has wrong length.");
4537-
4538- if(channels == 0) // if the requested number of channels is not given ...
4539- {
4540- // ... deduce it
4541- if(shape.size() == spatialDimensions)
4542- channels = 1;
4543- else
4544- channels = shape.back();
4545- }
4546- else
4547- {
4548- // otherwise, if the shape object also contains a channel dimension, they must be consistent
4549- if(shape.size() > spatialDimensions)
4550- vigra_precondition(channels == (unsigned int)shape[spatialDimensions],
4551- "constructNumpyArray(type, ...): shape contradicts requested number of channels.");
4552- }
4553-
4554- // if we have only one channel, no explicit channel dimension should be in the shape
4555- unsigned int shapeSize = channels == 1
4556- ? spatialDimensions
4557- : spatialDimensions + 1;
4558-
4559- // create the shape object with optional channel dimension
4560- ArrayVector<npy_intp> pshape(shapeSize);
4561- std::copy(shape.begin(), shape.begin()+std::min(shape.size(), pshape.size()), pshape.begin());
4562- if(shapeSize > spatialDimensions)
4563- pshape[spatialDimensions] = channels;
4564-
4565- // order "A" means "preserve order" when an array is copied, and
4566- // defaults to "V" when a new array is created without explicit strideOrdering
4567- //
4568- if(order == "A")
4569- {
4570- if(strideOrdering.size() == 0)
4571- {
4572- order = "V";
4573- }
4574- else if(strideOrdering.size() > shapeSize)
4575- {
4576- // make sure that strideOrdering length matches shape length
4577- ArrayVector<npy_intp> pstride(strideOrdering.begin(), strideOrdering.begin()+shapeSize);
4578-
4579- // adjust the ordering when the channel dimension has been dropped because channel == 1
4580- if(strideOrdering[shapeSize] == 0)
4581- for(unsigned int k=0; k<shapeSize; ++k)
4582- pstride[k] -= 1;
4583- pstride.swap(strideOrdering);
4584- }
4585- else if(strideOrdering.size() < shapeSize)
4586- {
4587- // make sure that strideOrdering length matches shape length
4588- ArrayVector<npy_intp> pstride(shapeSize);
4589-
4590- // adjust the ordering when the channel dimension has been dropped because channel == 1
4591- for(unsigned int k=0; k<shapeSize-1; ++k)
4592- pstride[k] = strideOrdering[k] + 1;
4593- pstride[shapeSize-1] = 0;
4594- pstride.swap(strideOrdering);
4595- }
4596- }
4597-
4598- // create the appropriate strideOrdering objects for the other memory orders
4599- // (when strideOrdering already contained data, it is ignored because order != "A")
4600- if(order == "C")
4601- {
4602- strideOrdering.resize(shapeSize);
4603- for(unsigned int k=0; k<shapeSize; ++k)
4604- strideOrdering[k] = shapeSize-1-k;
4605- }
4606- else if(order == "F" || (order == "V" && channels == 1))
4607- {
4608- strideOrdering.resize(shapeSize);
4609- for(unsigned int k=0; k<shapeSize; ++k)
4610- strideOrdering[k] = k;
4611- }
4612- else if(order == "V")
4613- {
4614- strideOrdering.resize(shapeSize);
4615- for(unsigned int k=0; k<shapeSize-1; ++k)
4616- strideOrdering[k] = k+1;
4617- strideOrdering[shapeSize-1] = 0;
4618- }
4619-
4620- return constructNumpyArrayImpl(type, pshape, strideOrdering.begin(), typeCode, init);
4621-}
4622-
4623-template <class TINY_VECTOR>
4624-inline
4625-python_ptr constructNumpyArrayFromData(
4626- std::string const & typeKeyFull,
4627- std::string const & typeKey,
4628- TINY_VECTOR const & shape, npy_intp *strides,
4629- NPY_TYPES typeCode, void *data)
4630-{
4631- ArrayVector<npy_intp> pyShape(shape.begin(), shape.end());
4632-
4633- python_ptr type = detail::getArrayTypeObject(typeKeyFull);
4634- if(type == 0)
4635- type = detail::getArrayTypeObject(typeKey, &PyArray_Type);
4636-
4637- python_ptr array(PyArray_New((PyTypeObject *)type.ptr(), shape.size(), pyShape.begin(), typeCode, strides, data, 0, NPY_WRITEABLE, 0),
4638- python_ptr::keep_count);
4639- pythonToCppException(array);
4640-
4641- return array;
4642-}
4643-
4644-
4645-} // namespace detail
4646-
4647-/********************************************************/
4648-/* */
4649-/* NumpyArrayValuetypeTraits */
4650-/* */
4651-/********************************************************/
4652-
4653-template<class ValueType>
4654-struct ERROR_NumpyArrayValuetypeTraits_not_specialized_for_ { };
4655-
4656-template<class ValueType>
4657-struct NumpyArrayValuetypeTraits
4658-{
4659- static bool isValuetypeCompatible(PyArrayObject const * obj)
4660- {
4661- return ERROR_NumpyArrayValuetypeTraits_not_specialized_for_<ValueType>();
4662- }
4663-
4664- static ERROR_NumpyArrayValuetypeTraits_not_specialized_for_<ValueType> typeCode;
4665-
4666- static std::string typeName()
4667- {
4668- return std::string("ERROR: NumpyArrayValuetypeTraits not specialized for this case");
4669- }
4670-
4671- static std::string typeNameImpex()
4672- {
4673- return std::string("ERROR: NumpyArrayValuetypeTraits not specialized for this case");
4674- }
4675-
4676- static PyObject * typeObject()
4677- {
4678- return (PyObject *)0;
4679- }
4680-};
4681-
4682-template<class ValueType>
4683-ERROR_NumpyArrayValuetypeTraits_not_specialized_for_<ValueType> NumpyArrayValuetypeTraits<ValueType>::typeCode;
4684-
4685-#define VIGRA_NUMPY_VALUETYPE_TRAITS(type, typeID, numpyTypeName, impexTypeName) \
4686-template <> \
4687-struct NumpyArrayValuetypeTraits<type > \
4688-{ \
4689- static bool isValuetypeCompatible(PyArrayObject const * obj) /* obj must not be NULL */ \
4690- { \
4691- return PyArray_EquivTypenums(typeID, PyArray_DESCR((PyObject *)obj)->type_num) && \
4692- PyArray_ITEMSIZE((PyObject *)obj) == sizeof(type); \
4693- } \
4694- \
4695- static NPY_TYPES const typeCode = typeID; \
4696- \
4697- static std::string typeName() \
4698- { \
4699- return #numpyTypeName; \
4700- } \
4701- \
4702- static std::string typeNameImpex() \
4703- { \
4704- return impexTypeName; \
4705- } \
4706- \
4707- static PyObject * typeObject() \
4708- { \
4709- return PyArray_TypeObjectFromType(typeID); \
4710- } \
4711-};
4712-
4713-VIGRA_NUMPY_VALUETYPE_TRAITS(bool, NPY_BOOL, bool, "UINT8")
4714-VIGRA_NUMPY_VALUETYPE_TRAITS(signed char, NPY_INT8, int8, "INT16")
4715-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned char, NPY_UINT8, uint8, "UINT8")
4716-VIGRA_NUMPY_VALUETYPE_TRAITS(short, NPY_INT16, int16, "INT16")
4717-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned short, NPY_UINT16, uint16, "UINT16")
4718-
4719-#if VIGRA_BITSOF_LONG == 32
4720-VIGRA_NUMPY_VALUETYPE_TRAITS(long, NPY_INT32, int32, "INT32")
4721-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long, NPY_UINT32, uint32, "UINT32")
4722-#elif VIGRA_BITSOF_LONG == 64
4723-VIGRA_NUMPY_VALUETYPE_TRAITS(long, NPY_INT64, int64, "DOUBLE")
4724-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long, NPY_UINT64, uint64, "DOUBLE")
4725-#endif
4726-
4727-#if VIGRA_BITSOF_INT == 32
4728-VIGRA_NUMPY_VALUETYPE_TRAITS(int, NPY_INT32, int32, "INT32")
4729-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned int, NPY_UINT32, uint32, "UINT32")
4730-#elif VIGRA_BITSOF_INT == 64
4731-VIGRA_NUMPY_VALUETYPE_TRAITS(int, NPY_INT64, int64, "DOUBLE")
4732-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned int, NPY_UINT64, uint64, "DOUBLE")
4733-#endif
4734-
4735-#ifdef PY_LONG_LONG
4736-# if VIGRA_BITSOF_LONG_LONG == 32
4737-VIGRA_NUMPY_VALUETYPE_TRAITS(long long, NPY_INT32, int32, "INT32")
4738-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long long, NPY_UINT32, uint32, "UINT32")
4739-# elif VIGRA_BITSOF_LONG_LONG == 64
4740-VIGRA_NUMPY_VALUETYPE_TRAITS(long long, NPY_INT64, int64, "DOUBLE")
4741-VIGRA_NUMPY_VALUETYPE_TRAITS(unsigned long long, NPY_UINT64, uint64, "DOUBLE")
4742-# endif
4743-#endif
4744-
4745-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_float32, NPY_FLOAT32, float32, "FLOAT")
4746-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_float64, NPY_FLOAT64, float64, "DOUBLE")
4747-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_longdouble, NPY_LONGDOUBLE, longdouble, "")
4748-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_cfloat, NPY_CFLOAT, complex64, "")
4749-VIGRA_NUMPY_VALUETYPE_TRAITS(std::complex<npy_float>, NPY_CFLOAT, complex64, "")
4750-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_cdouble, NPY_CDOUBLE, complex128, "")
4751-VIGRA_NUMPY_VALUETYPE_TRAITS(std::complex<npy_double>, NPY_CDOUBLE, complex128, "")
4752-VIGRA_NUMPY_VALUETYPE_TRAITS(npy_clongdouble, NPY_CLONGDOUBLE, clongdouble, "")
4753-VIGRA_NUMPY_VALUETYPE_TRAITS(std::complex<npy_longdouble>, NPY_CLONGDOUBLE, clongdouble, "")
4754-
4755-#undef VIGRA_NUMPY_VALUETYPE_TRAITS
4756-
4757-/********************************************************/
4758-/* */
4759-/* NumpyArrayTraits */
4760-/* */
4761-/********************************************************/
4762-
4763-template <class U, int N>
4764-bool stridesAreAscending(TinyVector<U, N> const & strides)
4765-{
4766- for(int k=1; k<N; ++k)
4767- if(strides[k] < strides[k-1])
4768- return false;
4769- return true;
4770-}
4771-
4772-template<unsigned int N, class T, class Stride>
4773-struct NumpyArrayTraits;
4774-
4775-template<unsigned int N, class T>
4776-struct NumpyArrayTraits<N, T, StridedArrayTag>
4777-{
4778- typedef T dtype;
4779- typedef T value_type;
4780- typedef NumpyArrayValuetypeTraits<T> ValuetypeTraits;
4781- static NPY_TYPES const typeCode = ValuetypeTraits::typeCode;
4782-
4783- enum { spatialDimensions = N, channels = 1 };
4784-
4785- static bool isArray(PyObject * obj)
4786- {
4787- return obj && PyArray_Check(obj);
4788- }
4789-
4790- static bool isClassCompatible(PyObject * obj)
4791- {
4792- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
4793- }
4794-
4795- static bool isValuetypeCompatible(PyArrayObject * obj) /* obj must not be NULL */
4796- {
4797- return ValuetypeTraits::isValuetypeCompatible(obj);
4798- }
4799-
4800- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
4801- {
4802- return PyArray_NDIM((PyObject *)obj) == N-1 ||
4803- PyArray_NDIM((PyObject *)obj) == N ||
4804- (PyArray_NDIM((PyObject *)obj) == N+1 && PyArray_DIM((PyObject *)obj, N) == 1);
4805- }
4806-
4807- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
4808- {
4809- return ValuetypeTraits::isValuetypeCompatible(obj) &&
4810- isShapeCompatible(obj);
4811- }
4812-
4813- template <class U>
4814- static python_ptr constructor(TinyVector<U, N> const & shape,
4815- T *data, TinyVector<U, N> const & stride)
4816- {
4817- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
4818- return detail::constructNumpyArrayFromData(typeKeyFull(), typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
4819- }
4820-
4821- static std::string typeKey()
4822- {
4823- static std::string key = std::string("NumpyArray<") + asString(N) + ", *>";
4824- return key;
4825- }
4826-
4827- static std::string typeKeyFull()
4828- {
4829- static std::string key = std::string("NumpyArray<") + asString(N) + ", " +
4830- ValuetypeTraits::typeName() + ", StridedArrayTag>";
4831- return key;
4832- }
4833-};
4834-
4835-/********************************************************/
4836-
4837-template<unsigned int N, class T>
4838-struct NumpyArrayTraits<N, T, UnstridedArrayTag>
4839-: public NumpyArrayTraits<N, T, StridedArrayTag>
4840-{
4841- typedef NumpyArrayTraits<N, T, StridedArrayTag> BaseType;
4842- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
4843-
4844- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
4845- {
4846- return BaseType::isShapeCompatible(obj) &&
4847- PyArray_STRIDES((PyObject *)obj)[0] == PyArray_ITEMSIZE((PyObject *)obj);
4848- }
4849-
4850- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
4851- {
4852- return BaseType::isValuetypeCompatible(obj) &&
4853- isShapeCompatible(obj);
4854- }
4855-
4856- template <class U>
4857- static python_ptr constructor(TinyVector<U, N> const & shape,
4858- T *data, TinyVector<U, N> const & stride)
4859- {
4860- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
4861- return detail::constructNumpyArrayFromData(typeKeyFull(), BaseType::typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
4862- }
4863-
4864- static std::string typeKeyFull()
4865- {
4866- static std::string key = std::string("NumpyArray<") + asString(N) + ", " +
4867- ValuetypeTraits::typeName() + ", UnstridedArrayTag>";
4868- return key;
4869- }
4870-};
4871-
4872-/********************************************************/
4873-
4874-template<unsigned int N, class T>
4875-struct NumpyArrayTraits<N, Singleband<T>, StridedArrayTag>
4876-: public NumpyArrayTraits<N, T, StridedArrayTag>
4877-{
4878- typedef NumpyArrayTraits<N, T, StridedArrayTag> BaseType;
4879- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
4880-
4881- static bool isClassCompatible(PyObject * obj)
4882- {
4883- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
4884- }
4885-
4886- template <class U>
4887- static python_ptr constructor(TinyVector<U, N> const & shape,
4888- T *data, TinyVector<U, N> const & stride)
4889- {
4890- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
4891- return detail::constructNumpyArrayFromData(typeKeyFull(), typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
4892- }
4893-
4894- static std::string typeKey()
4895- {
4896- static std::string key = std::string("NumpyArray<") + asString(N) + ", Singleband<*> >";
4897- return key;
4898- }
4899-
4900- static std::string typeKeyFull()
4901- {
4902- static std::string key = std::string("NumpyArray<") + asString(N) + ", Singleband<" +
4903- ValuetypeTraits::typeName() + ">, StridedArrayTag>";
4904- return key;
4905- }
4906-};
4907-
4908-/********************************************************/
4909-
4910-template<unsigned int N, class T>
4911-struct NumpyArrayTraits<N, Singleband<T>, UnstridedArrayTag>
4912-: public NumpyArrayTraits<N, Singleband<T>, StridedArrayTag>
4913-{
4914- typedef NumpyArrayTraits<N, T, UnstridedArrayTag> UnstridedTraits;
4915- typedef NumpyArrayTraits<N, Singleband<T>, StridedArrayTag> BaseType;
4916- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
4917-
4918- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
4919- {
4920- return UnstridedTraits::isShapeCompatible(obj);
4921- }
4922-
4923- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
4924- {
4925- return UnstridedTraits::isPropertyCompatible(obj);
4926- }
4927-
4928- template <class U>
4929- static python_ptr constructor(TinyVector<U, N> const & shape,
4930- T *data, TinyVector<U, N> const & stride)
4931- {
4932- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
4933- return detail::constructNumpyArrayFromData(typeKeyFull(), BaseType::typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
4934- }
4935-
4936- static std::string typeKeyFull()
4937- {
4938- static std::string key = std::string("NumpyArray<") + asString(N) + ", Singleband<" +
4939- ValuetypeTraits::typeName() + ">, UnstridedArrayTag>";
4940- return key;
4941- }
4942-};
4943-
4944-/********************************************************/
4945-
4946-template<unsigned int N, class T>
4947-struct NumpyArrayTraits<N, Multiband<T>, StridedArrayTag>
4948-: public NumpyArrayTraits<N, T, StridedArrayTag>
4949-{
4950- typedef NumpyArrayTraits<N, T, StridedArrayTag> BaseType;
4951- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
4952-
4953- enum { spatialDimensions = N-1, channels = 0 };
4954-
4955- static bool isClassCompatible(PyObject * obj)
4956- {
4957- return detail::performCustomizedArrayTypecheck(obj, typeKeyFull(), typeKey());
4958- }
4959-
4960- static bool isShapeCompatible(PyArrayObject * obj) /* obj must not be NULL */
4961- {
4962- return PyArray_NDIM(obj) == N || PyArray_NDIM(obj) == N-1;
4963- }
4964-
4965- static bool isPropertyCompatible(PyArrayObject * obj) /* obj must not be NULL */
4966- {
4967- return ValuetypeTraits::isValuetypeCompatible(obj) &&
4968- isShapeCompatible(obj);
4969- }
4970-
4971- template <class U>
4972- static python_ptr constructor(TinyVector<U, N> const & shape,
4973- T *data, TinyVector<U, N> const & stride)
4974- {
4975- TinyVector<npy_intp, N> npyStride(stride * sizeof(T));
4976- return detail::constructNumpyArrayFromData(typeKeyFull(), typeKey(), shape, npyStride.begin(), ValuetypeTraits::typeCode, data);
4977- }
4978-
4979- static std::string typeKey()
4980- {
4981- static std::string key = std::string("NumpyArray<") + asString(N) + ", Multiband<*> >";
4982- return key;
4983- }
4984-
4985- static std::string typeKeyFull()
4986- {
4987- static std::string key = std::string("NumpyArray<") + asString(N) + ", Multiband<" +
4988- ValuetypeTraits::typeName() + ">, StridedArrayTag>";
4989- return key;
4990- }
4991-};
4992-
4993-/********************************************************/
4994-
4995-template<unsigned int N, class T>
4996-struct NumpyArrayTraits<N, Multiband<T>, UnstridedArrayTag>
4997-: public NumpyArrayTraits<N, Multiband<T>, StridedArrayTag>
4998-{
4999- typedef NumpyArrayTraits<N, Multiband<T>, StridedArrayTag> BaseType;
5000- typedef typename BaseType::ValuetypeTraits ValuetypeTraits;
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