lp:~wormbase/wormbase-pipeline/trunk

Created by elpaule on 2015-07-14 and last modified on 2018-01-22
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Branch information

Owner:
WormBase
Project:
wormbase-pipeline
Status:
Development

Import details

Import Status: Reviewed

This branch is an import of the HEAD branch of the Git repository at https://github.com/WormBase/wormbase-pipeline.git.

The next import is scheduled to run in 4 hours.

Last successful import was 1 hour ago.

Import started 1 hour ago on pear and finished 1 hour ago taking 25 seconds — see the log
Import started 7 hours ago on pear and finished 7 hours ago taking 25 seconds — see the log
Import started 13 hours ago on pear and finished 13 hours ago taking 30 seconds — see the log
Import started 19 hours ago on pear and finished 19 hours ago taking 20 seconds — see the log
Import started on 2018-01-22 on pear and finished on 2018-01-22 taking 20 seconds — see the log
Import started on 2018-01-22 on russkaya and finished on 2018-01-22 taking 30 seconds — see the log
Import started on 2018-01-21 on pear and finished on 2018-01-21 taking 20 seconds — see the log
Import started on 2018-01-21 on russkaya and finished on 2018-01-21 taking 30 seconds — see the log
Import started on 2018-01-21 on pear and finished on 2018-01-21 taking 20 seconds — see the log
Import started on 2018-01-21 on russkaya and finished on 2018-01-21 taking 30 seconds — see the log

Recent revisions

10990. By Kevin Howe <email address hidden> 18 hours ago

Merge pull request #82 from wbazant/HEAD

Defaults for output file names

10989. By elpaule on 2018-01-18

added the C.nigoni repeat library, so it can be distributed to the FTP sites

10988. By Kevin Howe <email address hidden> on 2018-01-17

Merge branch 'master' of https://github.com/WormBase/wormbase-pipeline

10987. By Kevin Howe <email address hidden> on 2018-01-17

moved a use statement to a embedded require (method only rarely used)

10986. By Kevin Howe <email address hidden> on 2018-01-17

Added use Ace::Sequence

10985. By Gary Williams <email address hidden> on 2018-01-17

added Linkage Group 3 to the sequence name regex for tmuris

10984. By Gary Williams <email address hidden> on 2018-01-17

updated Find_next_CDS_ID for tmuris

10983. By Kevin Howe <email address hidden> on 2018-01-17

Fixed job numbering (cosmetic)

10982. By Kevin Howe <email address hidden> on 2018-01-17

Refactored GFF dumping. Now uses client-server for small seqs, and individual giface jobs for large seqs (regardless of contig or non-contig assembly type)

10981. By Gary Williams <email address hidden> on 2018-01-17

updated the regular expressions for T muris sequence names

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