Merge ~vpa1977/ubuntu/+source/unifrac:fix_tests into ubuntu/+source/unifrac:ubuntu/devel

[Vladimir Petko]

WIP: Add patch to round test result (autopkgtest failure)

Unmerged commits

8dc959a... by Vladimir Petko on 2023-10-05

changelog

abde12b... by Vladimir Petko on 2023-10-05

update-maintainer

7349146... by Vladimir Petko on 2023-10-04

  * d/p/round_test_results.patch: relax test assertion in test_unweighted_minimal_trees.

diff --git a/debian/changelog b/debian/changelog
index a452a73..5ff3745 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+unifrac (1.2-3ubuntu1) mantic; urgency=medium
+
+  * d/p/round_test_results.patch: relax test assertion in
+    test_unweighted_minimal_trees (LP: #2038397).
+
+ -- Vladimir Petko <[e-mail]>  Thu, 05 Oct 2023 13:21:44 +1300
+
 unifrac (1.2-3) unstable; urgency=medium
 
   * Versioned Build-Depends: python3-skbio (>= 0.5.8-3~)
diff --git a/debian/control b/debian/control
index 0789fe3..93975bb 100644
--- a/debian/control
+++ b/debian/control
@@ -1,5 +1,6 @@
 Source: unifrac
-Maintainer: Debian Med Packaging Team <[e-mail]>
+Maintainer: Ubuntu Developers <[e-mail]>
+XSBC-Original-Maintainer: Debian Med Packaging Team <[e-mail]>
 Uploaders: Andreas Tille <[e-mail]>
 Section: science
 Testsuite: autopkgtest-pkg-python
diff --git a/debian/patches/round_test_result.patch b/debian/patches/round_test_result.patch
new file mode 100644
index 0000000..0b7db3d
--- /dev/null
+++ b/debian/patches/round_test_result.patch
@@ -0,0 +1,19 @@
+Description: Round test result
+ Relax test assertion for the floating number comparison. 
+ This issue is not reproducible with the latest upstream unifrac-tools.
+Author: Vladimir Petko <[e-mail]>
+Bug: https://github.com/biocore/unifrac/issues/157
+Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/unifrac-tools/+bug/2038397
+Forwarded: not-needed
+Last-Update: 2023-10-05
+--- a/unifrac/tests/test_api.py
++++ b/unifrac/tests/test_api.py
+@@ -293,7 +293,7 @@
+         actual = self.unweighted_unifrac([1, 0], [0, 0], ['OTU1', 'OTU2'],
+                                          tree)
+         expected = 1.0
+-        self.assertEqual(actual, expected)
++        self.assertAlmostEqual(actual, expected, places=6)
+ 
+     def test_unweighted_root_not_observed(self):
+         # expected values computed with QIIME 1.9.1 and by hand
diff --git a/debian/patches/series b/debian/patches/series
index 53a044d..0a4cc18 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@
 remove-check-for-pkg-version.patch
 no_conda_prefix.patch
 relax_test_conditions.patch
+round_test_result.patch