lp:ubuntu/wily-proposed/ssake

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Review team:
Ubuntu Development Team
Status:
Development

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10. By Andreas Tille

* New upstream version
* cme fix dpkg-control
* insert '#!/bin/sh' line into example scripts

9. By Andreas Tille

* New upstream version
* Fixed watch file
* Prevent sending e-mail to upstream in case of successfull test

8. By Andreas Tille

* New upstream version
  Closes: #735836
* debian/control:
  - cme fix dpkg-control
  - debhelper 9
* debian/rules: cdbs -> dh
* debian/watch: fixed to report last version
* add autopkgtest

7. By Charles Plessy

[ A. Costa ]
* Corrected a typo in debian/ssake.1 (Closes: #650469).

[ Charles Plessy ]
* Depend on libperl4-corelibs-perl | perl (<< 5.12.3-7).
  Closes: #659428.

6. By Charles Plessy

* New upstream version 30% faster than the previous release. Additional
  assembly control has been implemented (-w) that limits the generation of
  low depth of coverage contigs.
* Use Debhelper 8 (debian/control, debian/compat).
* Corrected VCS URLs (debian/control).
* Incremented Standards-Version to indicate conformance with Policy 3.9.2.
  (debian/control, changes needed.)
* Implement rudimentary regression tests (debian/rules).

5. By Andreas Tille

* New upstream version
* Standards-Version: 3.9.1 (no changes needed)
* debian/rules: reflect upstream renamed testdir

4. By Andreas Tille

* New upstream version
* debian/source/format: Switched to source format 3.0 (quilt)
* debian/control:
   - Standards-Version: 3.8.4 (no changes needed)
* debian/rules
   - fixed cut-n-pasto

3. By Charles Plessy

* New upstream release.
   - Fixed a bug in PET routine. User can now track read position and
     individual base coverage for reads *fully embedded* within contigs,
     using the -c option.
   - Version 3.4 exploits paired-end reads to explore possible contig merges
     within scaffolds (Consecutive contigs >= -z bases must overlap by -m
     bases or more).
* debian/control:
  - Incremented Standards-Version to indicate conformance with Policy 3.8.2.
    (No changes needed.)
  - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic).
* Simplified debian/copyright according to latest discussions about the
  machine-readable format.

2. By Charles Plessy

* debian/control:
  - ssake and ssake-exmamples now depend on ${misc:Depends}.
  - ssake-examples suggests ssake instead of depending.
  - Reduced redundancy in the description of ssake.
  - Gave a specific description to ssake-examples.
* debian/ssake.docs, debian/reference: added BibTeX-formatted reference.
* debian/copyright:
  - Corrected the identity of the upstream maintainer.
  - Points to the version 2 of the GNU GPL.
  - added myself to the Hall of Fame.

1. By Charles Plessy

Import upstream version 3.2.1

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