lp:ubuntu/wily-proposed/python-cogent
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- 12. By Andreas Tille
-
* cme fix dpkg-control
* Priority: optional (except for *-dbg)
* DEP5
* debian/watch: Adapted to Github
* DEP3
* README.source removed since redundant
* cme fix dpkg-control
* Adapt to the naming scheme of cd-hit inside Debian
Closes: #730515
* Switch from python-support to pybuild
Closes: #786073 - 11. By Andreas Tille
-
debian/rules: Add -f option to rm statements to not fail if
files to be remove do not exist
Closes: #710339 - 10. By Thorsten Alteholz
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* New upstream
* debian/control: use dh 9
* debian/control: set standard to 3.9.4 (no changes)
* debian/rules: add get-orig-source target
* debian/rules: remove some superfluous files[ Tim Booth ]
* Added back python2 helper and invoked dh_numpy to sort deps
* Split out docs into separate package
* Added extra cleanup to dh_clean - 9. By Steffen Möller
-
* Explicitly added python-numpy as dependency
to binary ... where is the dh_shlibdeps?
Many thanks to Jakub (Closes: #640262).
* Added build-dependency on cython after look in setup.py
* Some further formatting in debian/control
* Added -dbg package
* Fiddled with debian/*.install to actually install the libraries
and fill that -dbg package.
* Added dependency to underscore.js - 7. By Andreas Tille
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* debian/control:
- Remove Sri Girish Srinivasa Murthy from Uploaders
- Standards-Version: 3.9.2 (no changes needed)
- python-all-dev (>= 2.6) to be able to use dh_python2
* debhelper 8 (control+compat)
* debian/rules: dh_python2
Finally closes: #596540 - 6. By Andreas Tille
-
* debian/copyright: Clarified license of two single non-free files
-> package can go to main
* debian/control:
- Added myself to uploaders
- python-central -> python-support
- Build-Depends: python-sphinx to create doc in HTML format
- Depends: libjs-jquery to enable using Debian packaged version
of this JS library
* debian/rules:
- Short dh syntax to simplyfy the following tasks
- Build html doc from rst
- avoid compressing used files
* Removed README.Debian because the non-free issue is solved
* debian/links: Link against Debian's jquery.js - 5. By Steffen Möller
-
* Bumped standard to 3.9.1, no changes required.
* New upstream version.
- major additions to Cookbook
- added AlleleFreqs attribute to ensembl Variation objects.
- added getGeneByStableId method to genome objects.
- added Introns attribute to Transcript objects and an Intron class.
- added Mann-Whitney test and a Monte-Carlo version
- exploratory and confirmatory period estimation techniques (suitable for
symbolic and continuous data)
- Information theoretic measures (AIC and BIC) added
- drawing of trees with collapsed nodes
- progress display indicator support for terminal and GUI apps
- added parser for illumina HiSeq2000 and GAiix sequence files as
cogent.parse.illumina_ sequence. MinimalIllumina SequenceParser.
- added parser to FASTQ files, one of the output options for illumina's
workflow, also added cookbook demo.
- added functionality for parsing of SFF files without the Roche tools in
cogent.parse.binary_ sff
- thousand fold performance improvement to nmds
- >10-fold performance improvements to some Table operations - 4. By Moritz Muehlenhoff <email address hidden>
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* Non-maintainer upload.
* Mark package as auto-buildable - 3. By Matthias Klose
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* Non-maintainer upload.
* Replace build-dependency on python2.5-dev with python-all-dev. Closes: #596325.
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