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15. By Charles Plessy on 2015-02-03

* Team upload.
* Install missing commands. Closes: #776881.

14. By Andreas Tille on 2014-10-02

* New upstream release
* cme fix dpkg-control
* Another patch to build with SeqAn 1.4 (Thanks to Gert Wollny)
* Add Depends: python (also Build-Depends since it is used in tests)

13. By Andreas Tille on 2014-09-15

* Drop all architectures except amd64 since there was no success
  in trying to port the code to other architectures. The portability
  patch introduced in the last revision was droped again
* debian/copyright: Drop unneeded copyright statements about code that
  was removed from upstream source

12. By Andreas Tille on 2014-09-03

* Do not use copy of outdated gcc header file which destroys portability
  to other architectures
  Closes: #756780
* Add README.Debian informing users about the fact that we ignore copy
  of cpuid.h
* Add unit tests for build time and autopkgtest
* Add debian/README.test to explain how to test the package
  Attention: Please take notice of /usr/share/bowtie/README.Debian about
    "Test suite for bowtie created and potential issue with sorting"

11. By Andreas Tille on 2014-07-30

* New upstream version (adapted patches)
* drop debian/get-orig-source but rather remove the SeqAn-1.1 code
  copy via Files-Excluded
* debian/control: Priority: optional

10. By Ognyan Kulev on 2014-03-08

* debian/patches/seqan-popcount.patch: New patch. (Closes: #733398)
* Version 1.4 of seqan-dev is required now.
* Standards-Version: 3.9.5 (no changes needed).
* Updated Vcs-Svn and Vcs-Browse fields as per Debian-Med policy.

9. By Ognyan Kulev on 2013-05-30

Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target
instead of override_dh_fixperms in debian/rules.

8. By Ognyan Kulev on 2013-05-29

* Lintian fixes:
  - Removed DM-Upload-Allowed field.
  - Standards Version 3.9.4 (no changes needed).
  - Remove execute bits on some files in bowtie-examples.
* Don't compress *.ebwt index files in bowtie-examples package.
* Package description now starts with a capital letter.

7. By Ognyan Kulev on 2013-04-24

New patch no_hash_style_both_for_mips.patch.
This fixes build errors on mips and mipsel.

6. By Ognyan Kulev on 2013-04-24

* Requires version 1.3 of SeqAn.
* Updated README.source about using Debian's SeqAn library.
* Removed machine_bits_detection.patch and added disable_bits_flag.patch.