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14. By Elmar Pruesse on 2014-09-02

[ Andreas Tille ]
* New upstream version
  Closes: #741890
* debian/upstream -> debian/upstream/metadata
* debian/control:
   - Build-Depends: added libglib2.0-dev
   - Depends: added mafft, mrbayes
* debian/rules
   - Add explicite --remove-section=.comment option to manual strip call
* cme fix dpkg-control
* arb-common.dirs: Do not create unneeded lintian dir
* Add turkish debconf translation (thanks for the patch to Mert Dirik
  <email address hidden>)
  Closes: #757497

[ Elmar Pruesse ]
* patches removed:
   - 10_config.makefiles.patch,
     80_no_GL.patch
       removed in favor of creating file from config.makefile.template via
       sed in debian/control
   - 20_Makefile_main.patch
       merged upstream
   - 21_Makefiles.patch
       no longer needed
   - 30_tmpfile_CVE-2008-5378.patch:
       merged upstream
   - 50_fix_gcc-4.8.patch:
       merged upstream
   - 40_add_libGLU.patch:
       libGLU not needed for arb_ntree)
   - 60_use_debian_packaged_raxml.patch:
       merged upstream
   - 70_hardening.patch
       merged upstream
   - 72_add_math_lib_to_linker.patch
       does not appear to be needed
* patches added:
   - 10_upstream_r12793__show_db_load_progress:
       backported patch showing progress while ARB is loading a database
       (needed as indicator/splash screen while ARB is launching)
   - 20_upstream_r12794__socket_permissions:
       backported security fix
   - 30_upstream_r12814__desktop_keywords:
       backported add keywords to desktop (fixes lintian warning)
   - 40_upstream_r12815__lintian_spelling:
       backported fix for lintian reported spelling errors
   - 50_private_nameservers
       change configuration to put nameservers into users home dirs
       (avoids need for shared writeable directory)
   - 60_use_debian_phyml
       use phyml from debian package for both interfaces in ARB
* debian/rules:
   - create config.makefile from override_dh_configure target
   - use "make tarfile" in override_dh_install
   - remove extra cleaning not needed for ARB 6
   - use "dh_install --list-missing" to avoid missing files
   - added override_dh_fixperms target
* debian/control:
   - added libarb-dev package
   - Depends: added phyml, xdg-utils
   - Suggests: removed phyml
   - fix lintian duplicate-short-description (new descriptions)
* debian/*.install:
   - "unrolled" confusing globbing to select files
   - pick files from debian/tmp
   - moved all config files to /etc/arb
* debian/arb-common.templates: updated
* scripts:
   - removed arb-add-pt-server
   - launch-wrapper:
     - only add demo.arb to newly created $ARBUSERDATA
     - pass commandline arguments through bin/arb wrapper
   - preinst: removing old PT server index files on upgrade from 5.5*
   - postinst: set setgid on shared PT dir
* rewrote arb.1 manfile
* added file icon for ARB databases
* using upstream arb_tcp.dat

13. By Matthias Klose on 2014-01-07

* Rebuild against glew 1.10.
* Fix build with recent GL (?), Motif (?).

12. By Andreas Tille on 2013-12-04

* build-depend on libtiff-dev instead of libtiff4-dev (thanks for the
  patch to Logan Rosen <email address hidden>)
  Closes: #729769
* cme fix dpkg-control
* cme fix dpkg-copyright
* canonical Vcs fields
* debian/patches/hardening.patch: Propagate hardening options

11. By Logan Rosen on 2013-11-16

Build-depend on libtiff-dev rather than libtiff4-dev.

10. By Andreas Tille on 2013-06-28

Build-Depends: libglew-dev instead of libglew1.5-dev
Closes: #714327

9. By Graham Inggs on 2013-06-27

* Merge from Debian unstable (LP: #1194864). Remaining changes:
  - Transition to libglew-dev (1.8)

8. By Graham Inggs on 2013-06-26

* Merge from Debian unstable (LP: #1194864). Remaining changes:
  - Transition to libglew-dev (1.8)

7. By Andreas Tille on 2012-07-26

* debian/upstream: Add citations
* debian/control:
   - Build-Depends: libpng-dev instead of libpng12-dev
     Closes: #662270
   - Standards-Version: 3.9.3 (no changes needed)
* debian/po/nl.po: Add Dutch translation of debconf templates
  Thanks for the translation to Jeroen Schot <email address hidden>
  Closes: #654763
* debian/patches/30_Makefile_main:
   - Enable gcc-4.7 as well
     Closes: #682404
   - Enable using hardening flags
* debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
* debhelper 9 (control+compat)
* debian/rules:
   - Fixed clean target
   - propagate hardening flags

6. By Matthias Klose on 2009-10-25

[ Scott Kitterman ]
* Drop kaffe from build-depends so it can be removed
* Replace the long ago removed free-java-sdk with default-jdk in
  build-depends
* Add GCC 4.4.1 to allowed GCC versions in debian/patches/30_Makefile_main
* Add debian/patches/gcc4.4_build.patch to fix build with GCC 4.4
  - Add #include <cstdio> in SL/FILE_BUFFER/FileBuffer.cxx

[ Matthias Klose ]
* Fix build failures with glibc-2.10.

5. By Andreas Tille on 2009-03-20

* Bumped debhelper to version 7
   -> dh_clean -k -> dh_clean; dh_prep
* Standards-Version: 3.8.1 (no changes needed)
* Enhanced package description of arb-common and arb-doc
  Closes: #517710
* Added Portuguese translation for debconf messages (thanks to
  Traduz <email address hidden>)
  Closes: #516958
* Added Depends: ${misc:Depends} to all packages