lp:ubuntu/trusty-proposed/ncbi-tools6

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Status:
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24. By Aaron M. Ucko

* debian/rules: Use find -perm /..., not deprecated +.... (Closes: #724777.)
* debian/.gitignore: Belatedly update for switch to libvibrant6b.

23. By Aaron M. Ucko

debian/installman: Eliminate for $var qw(...) syntax that broke with
Perl 5.18. (Closes: #722913.)

22. By Aaron M. Ucko

* demo/makeset.c: If unable to open an input ASN.1 file, report an error
  and exit rather than trying to work with a NULL pointer and crashing.
  (Thanks to Alexandre Rebert and the Mayhem Team at Carnegie Mellon
  University's Cylab for revealing this possibility.)
* debian/control: Modernize libvibrant6b-dbg's short description.

21. By Aaron M. Ucko

* Rename libvibrant6(-dbg) to libvibrant6b(-dbg), as the release team
  doesn't condone ever reusing binary package names.
* blast2: Conflict with unofficial ncbi-blast packages. (LP: #658240.)
* Rebuild in a clean environment. (Closes: #714070.)

20. By Aaron M. Ucko

* Migrate from Lesstif to Motif, which is (finally!) free these days.
  - Substitute libmotif-dev for liblesstif-dev in Build-Depends and
    libvibrant6-dev's Depends.
  - Rename libvibrant6a(-dbg) back to libvibrant6(-dbg).
* Standards-Version: 3.9.4. (Already compliant.)

19. By Aaron M. Ucko

[ Andreas Tille ]
debian/upstream: Strings containing ': ' need to be quoted.

18. By Aaron M. Ucko

debian/rules: Tweak -fPIC -> -fPIE substitution to accommodate platforms
(kFreeBSD, and some Linux architectures) lacking PIE support.

17. By Aaron M. Ucko

[ Andreas Tille ]
* debian/upstream: Added citation information

[ Aaron M. Ucko ]
* debian/control:
  - Build-Depends-Indep: dpkg-dev (>= 1.16.2~) for dpkg-deb -Sextreme.
  - Repoint Vcs-* at anonscm.debian.org (vs. git.debian.org).
* debian/rules:
  - Enable full hardening flags, contriving to substitute -fPIC for
    -fPIE as necessary.
  - Build ncbi-rrna-data with -Sextreme rather than hacking XZ_OPT.
* make/makeshlb.unx: Honor externally supplied (hardening) LDFLAGS.

16. By Aaron M. Ucko

* debian/control:
  - Give ncbi-rrna-data a pre-dependency on dpkg (>= 1.15.6) for xz support.
  - Wrap and sort (build) dependencies.
  - Drop specific build dependency on libpng12-dev, even as a preferred
    libpng-dev provider. (Closes: #662442.)
  - Require debhelper (>= 9), which has been final for some time.
  - Standards-Version: 3.9.3. (No changes needed.)
* debian/{libncbi6,ncbi-tools-bin}.install: sort as well.

15. By Aaron M. Ucko

* debian/{libncbi6-dev,ncbi-tools-bin}.install: move /usr/bin/asntool
  and /usr/bin/errhdr from libncbi6-dev to ncbi-tools-bin so that the
  former can properly be Multi-Arch: same. (Closes: #646970.)
* debian/libncbi6-dev.NEWS.debian: note the above move.
* debian/control: adjust descriptions and relationships accordingly.
* debian/{libncbi6-dev,ncbi-tools-bin}.lintian-overrides: update accordingly.
* debian/rules:
  - Don't try to give libncbi6-dev manpages or menu entries.
  - Compress the giant ncbi-rrna-data package with xz -7e (the sweet spot).

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