Created by Ubuntu Package Importer and last modified
Get this branch:
bzr branch lp:ubuntu/saucy-proposed/ncbi-tools6
Members of Ubuntu branches can upload to this branch. Log in for directions.

Branch merges

Related bugs

Related blueprints

Branch information

Ubuntu branches
Review team:
Ubuntu Development Team

Recent revisions

22. By Aaron M. Ucko

* demo/makeset.c: If unable to open an input ASN.1 file, report an error
  and exit rather than trying to work with a NULL pointer and crashing.
  (Thanks to Alexandre Rebert and the Mayhem Team at Carnegie Mellon
  University's Cylab for revealing this possibility.)
* debian/control: Modernize libvibrant6b-dbg's short description.

21. By Aaron M. Ucko

* Rename libvibrant6(-dbg) to libvibrant6b(-dbg), as the release team
  doesn't condone ever reusing binary package names.
* blast2: Conflict with unofficial ncbi-blast packages. (LP: #658240.)
* Rebuild in a clean environment. (Closes: #714070.)

20. By Aaron M. Ucko

* Migrate from Lesstif to Motif, which is (finally!) free these days.
  - Substitute libmotif-dev for liblesstif-dev in Build-Depends and
    libvibrant6-dev's Depends.
  - Rename libvibrant6a(-dbg) back to libvibrant6(-dbg).
* Standards-Version: 3.9.4. (Already compliant.)

19. By Aaron M. Ucko

[ Andreas Tille ]
debian/upstream: Strings containing ': ' need to be quoted.

18. By Aaron M. Ucko

debian/rules: Tweak -fPIC -> -fPIE substitution to accommodate platforms
(kFreeBSD, and some Linux architectures) lacking PIE support.

17. By Aaron M. Ucko

[ Andreas Tille ]
* debian/upstream: Added citation information

[ Aaron M. Ucko ]
* debian/control:
  - Build-Depends-Indep: dpkg-dev (>= 1.16.2~) for dpkg-deb -Sextreme.
  - Repoint Vcs-* at anonscm.debian.org (vs. git.debian.org).
* debian/rules:
  - Enable full hardening flags, contriving to substitute -fPIC for
    -fPIE as necessary.
  - Build ncbi-rrna-data with -Sextreme rather than hacking XZ_OPT.
* make/makeshlb.unx: Honor externally supplied (hardening) LDFLAGS.

16. By Aaron M. Ucko

* debian/control:
  - Give ncbi-rrna-data a pre-dependency on dpkg (>= 1.15.6) for xz support.
  - Wrap and sort (build) dependencies.
  - Drop specific build dependency on libpng12-dev, even as a preferred
    libpng-dev provider. (Closes: #662442.)
  - Require debhelper (>= 9), which has been final for some time.
  - Standards-Version: 3.9.3. (No changes needed.)
* debian/{libncbi6,ncbi-tools-bin}.install: sort as well.

15. By Aaron M. Ucko

* debian/{libncbi6-dev,ncbi-tools-bin}.install: move /usr/bin/asntool
  and /usr/bin/errhdr from libncbi6-dev to ncbi-tools-bin so that the
  former can properly be Multi-Arch: same. (Closes: #646970.)
* debian/libncbi6-dev.NEWS.debian: note the above move.
* debian/control: adjust descriptions and relationships accordingly.
* debian/{libncbi6-dev,ncbi-tools-bin}.lintian-overrides: update accordingly.
* debian/rules:
  - Don't try to give libncbi6-dev manpages or menu entries.
  - Compress the giant ncbi-rrna-data package with xz -7e (the sweet spot).

14. By Aaron M. Ucko

api/alignmgr2.c, api/pgppop.c, api/txalign.c, desktop/seqpanel.c,
tools/spidey.c: avoid calling printf and the like with non-constant
strings, as caught by -Werror=format-security. (Closes: #643444.)

13. By Aaron M. Ucko

* New upstream release.
* debian/*.symbols: update accordingly.
* make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt.
* doc/man/*.1: update for new release.
* debian/rules:
  - (VIB): add asnmacro, as upstream takes care to publish binaries thereof.
  - Retire obsolete multiarch-unaware checks for libpthread.
  - Fully modernize Debhelper usage; in particular, transition to overrides.
* debian/compat: advance to 9 per rules modernization.
* debian/ncbi-tools-bin.install: add asnmacro.
* make/makenet.unx: link asnmacro only against libraries it directly needs.
* doc/man/asnmacro.1: give asnmacro a man page.
* doc/man/Psequin.1: list it in SEE ALSO.
* network/id1arch/idfetch.c: revert redundant change (from #295110).
* Convert to multiarch.
  - debian/rules: Install libraries (and ncbithr.o) to multiarch directories.
  - debian/lib*.install: match multiarch library paths.
  - debian/control:
    + Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev.
    + Set Multi-Arch: as appropriate across the board, and specify
      Pre-Depends: ${misc:Pre-Depends} for runtime libraries.
* debian/*.lintian-overrides: drop leading slashes for Lintian 2.5.x.
* debian/control: Standards-Version: 3.9.2 (already compliant).

Branch metadata

Branch format:
Branch format 7
Repository format:
Bazaar repository format 2a (needs bzr 1.16 or later)
Stacked on:
This branch contains Public information 
Everyone can see this information.