lp:ubuntu/saucy-proposed/ncbi-tools6
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- 22. By Aaron M. Ucko
-
* demo/makeset.c: If unable to open an input ASN.1 file, report an error
and exit rather than trying to work with a NULL pointer and crashing.
(Thanks to Alexandre Rebert and the Mayhem Team at Carnegie Mellon
University's Cylab for revealing this possibility.)
* debian/control: Modernize libvibrant6b-dbg's short description. - 21. By Aaron M. Ucko
-
* Rename libvibrant6(-dbg) to libvibrant6b(-dbg), as the release team
doesn't condone ever reusing binary package names.
* blast2: Conflict with unofficial ncbi-blast packages. (LP: #658240.)
* Rebuild in a clean environment. (Closes: #714070.) - 20. By Aaron M. Ucko
-
* Migrate from Lesstif to Motif, which is (finally!) free these days.
- Substitute libmotif-dev for liblesstif-dev in Build-Depends and
libvibrant6-dev's Depends.
- Rename libvibrant6a(-dbg) back to libvibrant6(-dbg).
* Standards-Version: 3.9.4. (Already compliant.) - 18. By Aaron M. Ucko
-
debian/rules: Tweak -fPIC -> -fPIE substitution to accommodate platforms
(kFreeBSD, and some Linux architectures) lacking PIE support. - 17. By Aaron M. Ucko
-
[ Andreas Tille ]
* debian/upstream: Added citation information[ Aaron M. Ucko ]
* debian/control:
- Build-Depends-Indep: dpkg-dev (>= 1.16.2~) for dpkg-deb -Sextreme.
- Repoint Vcs-* at anonscm.debian.org (vs. git.debian.org).
* debian/rules:
- Enable full hardening flags, contriving to substitute -fPIC for
-fPIE as necessary.
- Build ncbi-rrna-data with -Sextreme rather than hacking XZ_OPT.
* make/makeshlb.unx: Honor externally supplied (hardening) LDFLAGS. - 16. By Aaron M. Ucko
-
* debian/control:
- Give ncbi-rrna-data a pre-dependency on dpkg (>= 1.15.6) for xz support.
- Wrap and sort (build) dependencies.
- Drop specific build dependency on libpng12-dev, even as a preferred
libpng-dev provider. (Closes: #662442.)
- Require debhelper (>= 9), which has been final for some time.
- Standards-Version: 3.9.3. (No changes needed.)
* debian/{libncbi6, ncbi-tools- bin}.install: sort as well. - 15. By Aaron M. Ucko
-
* debian/
{libncbi6- dev,ncbi- tools-bin} .install: move /usr/bin/asntool
and /usr/bin/errhdr from libncbi6-dev to ncbi-tools-bin so that the
former can properly be Multi-Arch: same. (Closes: #646970.)
* debian/libncbi6- dev.NEWS. debian: note the above move.
* debian/control: adjust descriptions and relationships accordingly.
* debian/{libncbi6- dev,ncbi- tools-bin} .lintian- overrides: update accordingly.
* debian/rules:
- Don't try to give libncbi6-dev manpages or menu entries.
- Compress the giant ncbi-rrna-data package with xz -7e (the sweet spot). - 14. By Aaron M. Ucko
-
api/alignmgr2.c, api/pgppop.c, api/txalign.c, desktop/seqpanel.c,
tools/spidey.c: avoid calling printf and the like with non-constant
strings, as caught by -Werror=format- security. (Closes: #643444.) - 13. By Aaron M. Ucko
-
* New upstream release.
* debian/*.symbols: update accordingly.
* make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt.
* doc/man/*.1: update for new release.
* debian/rules:
- (VIB): add asnmacro, as upstream takes care to publish binaries thereof.
- Retire obsolete multiarch-unaware checks for libpthread.
- Fully modernize Debhelper usage; in particular, transition to overrides.
* debian/compat: advance to 9 per rules modernization.
* debian/ncbi-tools- bin.install: add asnmacro.
* make/makenet.unx: link asnmacro only against libraries it directly needs.
* doc/man/asnmacro.1: give asnmacro a man page.
* doc/man/Psequin.1: list it in SEE ALSO.
* network/id1arch/ idfetch. c: revert redundant change (from #295110).
* Convert to multiarch.
- debian/rules: Install libraries (and ncbithr.o) to multiarch directories.
- debian/lib*.install: match multiarch library paths.
- debian/control:
+ Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev.
+ Set Multi-Arch: as appropriate across the board, and specify
Pre-Depends: ${misc:Pre-Depends} for runtime libraries.
* debian/*.lintian- overrides: drop leading slashes for Lintian 2.5.x.
* debian/control: Standards-Version: 3.9.2 (already compliant).
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