lp:ubuntu/precise/python-cogent

Created by James Westby and last modified
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Recent revisions

9. By Steffen Möller

* Explicitly added python-numpy as dependency
  to binary ... where is the dh_shlibdeps?
  Many thanks to Jakub (Closes: #640262).
* Added build-dependency on cython after look in setup.py
* Some further formatting in debian/control
* Added -dbg package
* Fiddled with debian/*.install to actually install the libraries
  and fill that -dbg package.
* Added dependency to underscore.js

8. By Steffen Möller

* New upstream version.
* Reformatted debian/control description

7. By Andreas Tille

* debian/control:
  - Remove Sri Girish Srinivasa Murthy from Uploaders
  - Standards-Version: 3.9.2 (no changes needed)
  - python-all-dev (>= 2.6) to be able to use dh_python2
* debhelper 8 (control+compat)
* debian/rules: dh_python2
  Finally closes: #596540

6. By Andreas Tille

* debian/copyright: Clarified license of two single non-free files
  -> package can go to main
* debian/control:
  - Added myself to uploaders
  - python-central -> python-support
  - Build-Depends: python-sphinx to create doc in HTML format
  - Depends: libjs-jquery to enable using Debian packaged version
    of this JS library
* debian/rules:
  - Short dh syntax to simplyfy the following tasks
  - Build html doc from rst
  - avoid compressing used files
* Removed README.Debian because the non-free issue is solved
* debian/links: Link against Debian's jquery.js

5. By Steffen Möller

* Bumped standard to 3.9.1, no changes required.
* New upstream version.
  - major additions to Cookbook
  - added AlleleFreqs attribute to ensembl Variation objects.
  - added getGeneByStableId method to genome objects.
  - added Introns attribute to Transcript objects and an Intron class.
  - added Mann-Whitney test and a Monte-Carlo version
  - exploratory and confirmatory period estimation techniques (suitable for
    symbolic and continuous data)
  - Information theoretic measures (AIC and BIC) added
  - drawing of trees with collapsed nodes
  - progress display indicator support for terminal and GUI apps
  - added parser for illumina HiSeq2000 and GAiix sequence files as
    cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser.
  - added parser to FASTQ files, one of the output options for illumina's
    workflow, also added cookbook demo.
  - added functionality for parsing of SFF files without the Roche tools in
    cogent.parse.binary_sff
  - thousand fold performance improvement to nmds
  - >10-fold performance improvements to some Table operations

4. By Moritz Muehlenhoff <email address hidden>

* Non-maintainer upload.
* Mark package as auto-buildable

3. By Matthias Klose

* Non-maintainer upload.
* Replace build-dependency on python2.5-dev with python-all-dev. Closes: #596325.

2. By Sri Girish Srinivasa Murthy <email address hidden>

Initial release (Closes: #587161)

1. By Sri Girish Srinivasa Murthy <email address hidden>

Import upstream version 1.4.1

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