lp:ubuntu/precise/ncbi-tools6

Created by James Westby and last modified
Get this branch:
bzr branch lp:ubuntu/precise/ncbi-tools6
Members of Ubuntu branches can upload to this branch. Log in for directions.

Related bugs

Related blueprints

Branch information

Owner:
Ubuntu branches
Status:
Mature

Recent revisions

18. By Steve Langasek

releasing version 6.1.20110713-3ubuntu2

17. By Steve Langasek

No-change rebuild with gzip 1.4-1ubuntu2 to get multiarch-clean
compressed documentation.

16. By Colin Watson

ncbi-rrna-data Pre-Depends: dpkg (>= 1.15.6) for xz compression support.
Needed until after Ubuntu 12.04 LTS.

15. By Aaron M. Ucko

* debian/{libncbi6-dev,ncbi-tools-bin}.install: move /usr/bin/asntool
  and /usr/bin/errhdr from libncbi6-dev to ncbi-tools-bin so that the
  former can properly be Multi-Arch: same. (Closes: #646970.)
* debian/libncbi6-dev.NEWS.debian: note the above move.
* debian/control: adjust descriptions and relationships accordingly.
* debian/{libncbi6-dev,ncbi-tools-bin}.lintian-overrides: update accordingly.
* debian/rules:
  - Don't try to give libncbi6-dev manpages or menu entries.
  - Compress the giant ncbi-rrna-data package with xz -7e (the sweet spot).

14. By Aaron M. Ucko

api/alignmgr2.c, api/pgppop.c, api/txalign.c, desktop/seqpanel.c,
tools/spidey.c: avoid calling printf and the like with non-constant
strings, as caught by -Werror=format-security. (Closes: #643444.)

13. By Aaron M. Ucko

* New upstream release.
* debian/*.symbols: update accordingly.
* make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt.
* doc/man/*.1: update for new release.
* debian/rules:
  - (VIB): add asnmacro, as upstream takes care to publish binaries thereof.
  - Retire obsolete multiarch-unaware checks for libpthread.
  - Fully modernize Debhelper usage; in particular, transition to overrides.
* debian/compat: advance to 9 per rules modernization.
* debian/ncbi-tools-bin.install: add asnmacro.
* make/makenet.unx: link asnmacro only against libraries it directly needs.
* doc/man/asnmacro.1: give asnmacro a man page.
* doc/man/Psequin.1: list it in SEE ALSO.
* network/id1arch/idfetch.c: revert redundant change (from #295110).
* Convert to multiarch.
  - debian/rules: Install libraries (and ncbithr.o) to multiarch directories.
  - debian/lib*.install: match multiarch library paths.
  - debian/control:
    + Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev.
    + Set Multi-Arch: as appropriate across the board, and specify
      Pre-Depends: ${misc:Pre-Depends} for runtime libraries.
* debian/*.lintian-overrides: drop leading slashes for Lintian 2.5.x.
* debian/control: Standards-Version: 3.9.2 (already compliant).

12. By Aaron M. Ucko

vibrant/shim3d.c: support libpng 1.5+, per Nobuhiro Iwamatsu's most
helpful patch. (Closes: #636006.)

11. By Aaron M. Ucko

Reupload to unstable following the release of Debian 6.0 (squeeze).

10. By Aaron M. Ucko

* debian/rules
  - Clean up compilation settings; in particular, use dpkg-buildflags rather
    than relying on dpkg-buildpackage to have set CFLAGS appropriately.
  - (clean): restore expected empty directories if necessary,
    for compatibility with VCSes (notably git) that don't track them.
  - (VIB): add asndisc, as upstream takes care to publish binaries thereof.
* debian/ncbi-tools6.install: likewise add asndisc.
* (debian/).gitignore: Ignore content generated during build.
* make/makenet.unx: don't link asndisc against extraneous libraries.
* doc/man/asndisc.1: throw together a man page for asndisc.
* doc/man/cleanasn.1: fix SEE ALSO formatting.
* debian/control:
  - bump dpkg-dev build-dep to >= 1.15.7 for dpkg-buildflags.
  - Standards-Version: 3.9.1 (already compliant).
  - note switch to git-mediated Debian-Med team maintenance.

9. By Aaron M. Ucko

* New upstream release.
* debian/libncbi6.symbols: update accordingly.
* debian/control: clean up obsolete or redundant relationship declarations.

Branch metadata

Branch format:
Branch format 7
Repository format:
Bazaar repository format 2a (needs bzr 1.16 or later)
Stacked on:
lp:ubuntu/quantal/ncbi-tools6
This branch contains Public information 
Everyone can see this information.

Subscribers