lp:ubuntu/precise/ncbi-blast+

Created by James Westby and last modified
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7. By Andreas Tille

* Do not output everything to STDERR in
  c++/src/app/blast/update_blastdb.pl
  Closes: #644237
* debian/control: Depends s/${python:Depends}/python/ because
  the python dependency of /usr/bin/windowmasker_2.2.22_adapter
  is not detected obviosely
* debian/copyright: Indentation fixes to get DEP5 compatibility

6. By osallou

 * debian/control:
   Luca Capello <email address hidden>, fix reference for legacy_blast (Closes: #642986).
   + add a new line to separate the actual description from usage
    instruction in the long Description:.
 * debian/rules: add gene_info_reader binary in package

5. By Julian Taylor

debian/rules: disable --as-needed build (LP: #803185)
almost all private libs are underlinked, fixing them is not worth the
effort

4. By Aaron M. Ucko

* Team upload.
* debian/rules:
  - Export MAKE to override an internal upstream build script that
    otherwise incorrectly defaults to gmake on non-Linux
    architectures. (Really closes: #629656, with any luck.)
  - Force CONFIG_SHELL=/bin/bash to avoid lossage that can occur with zsh4
    masquerading as ksh, which configure otherwise favors (due to complaints
    from users with broken BASH_ENV scripts that change directories).

3. By Aaron M. Ucko

* Team upload.
* Fix several sources of build failures (closes: #629656):
  - debian/rules (override_dh_install): Correctly support building only
    architecture-dependent packages.
    (DEB_CONFIGURE_EXTRA_FLAGS): Add --without-caution to override the
    upstream build system's reluctance to build shared libraries on the
    Hurd or kFreeBSD, which it doesn't specifically recognize. Limit C++
    optimization level to -O (rather than the default -O2) on mips(el),
    on which g++ otherwise crashes. :-/
  - debian/patches/support_other_cpus (new; committed upstream too):
    build correctly on architectures that wound up defining
    NCBI_SLOW_ATOMIC_SWAP (spuriously in the case of powerpc,
    whose detection the patch fixes as well).

2. By osallou

Initial release (Closes: #624394)

1. By osallou

Import upstream version 2.2.25

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