lp:ubuntu/natty/python-cogent
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Recent revisions
- 5. By Steffen Möller
-
* Bumped standard to 3.9.1, no changes required.
* New upstream version.
- major additions to Cookbook
- added AlleleFreqs attribute to ensembl Variation objects.
- added getGeneByStableId method to genome objects.
- added Introns attribute to Transcript objects and an Intron class.
- added Mann-Whitney test and a Monte-Carlo version
- exploratory and confirmatory period estimation techniques (suitable for
symbolic and continuous data)
- Information theoretic measures (AIC and BIC) added
- drawing of trees with collapsed nodes
- progress display indicator support for terminal and GUI apps
- added parser for illumina HiSeq2000 and GAiix sequence files as
cogent.parse.illumina_ sequence. MinimalIllumina SequenceParser.
- added parser to FASTQ files, one of the output options for illumina's
workflow, also added cookbook demo.
- added functionality for parsing of SFF files without the Roche tools in
cogent.parse.binary_ sff
- thousand fold performance improvement to nmds
- >10-fold performance improvements to some Table operations - 4. By Moritz Muehlenhoff <email address hidden>
-
* Non-maintainer upload.
* Mark package as auto-buildable - 3. By Matthias Klose
-
* Non-maintainer upload.
* Replace build-dependency on python2.5-dev with python-all-dev. Closes: #596325.
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- lp:ubuntu/oneiric/python-cogent