lp:ubuntu/karmic/python-biopython

Created by James Westby and last modified
Get this branch:
bzr branch lp:ubuntu/karmic/python-biopython
Members of Ubuntu branches can upload to this branch. Log in for directions.

Related bugs

Related blueprints

Branch information

Owner:
Ubuntu branches
Review team:
Ubuntu Development Team
Status:
Development

Recent revisions

9. By Philipp Benner <email address hidden>

Merged patch from ubuntu to make the package ready for
python2.6 (Closes: #543236).

8. By Andres Rodriguez

* Merge from debian unstable (LP: #394969), remaining changes:
  - Python 2.6 transition.

7. By Michael Bienia

Python 2.6 transition.

6. By Charles Plessy

* New upstream release.
  - uses NumPy rather than its precursor Numeric (Closes: #478457)
  - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
    Bio.IntelliGenetics are deprecated.
  - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
    and will be deprecated in a future release.
  - Bio.Fasta is also considered to be obsolete and will eventually be
    deprecated.
* debian/control:
  - added myself as Uploader.
  - depends on python-numpy instead of python-numeric-ext.
  - moved python-martel to oldlibs section, priority extra as it is
    deprecated, and indicate this in the description.
  - build-depend on python-mysqldb and wise for the tests after building.
* Use Debhelper 7 (debian/co{ntrol,mpat}).
* debian/copyright: added myself to the Hall of Fame and updated to latest
  draft of the machine-readable format.
* debian/watch: makes beta versions lower by prepending a tilde between
  numbers and letters (1.49b -> 1.49~b).
* mmCIF support enabled:
  - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
  - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
  - debian/control: build-depends on quilt.
* debian/python-biopython-doc.doc-base: corrected index name that was changed
  upstream.
* debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
  version of Wise.
* debian/rules: perform tests after build.

5. By Philipp Benner <email address hidden>

* New upstream release
* Standards version 3.8.0

4. By Philipp Benner <email address hidden>

Removed dependency on python-numeric-ext since it is already in
the recommends field

3. By Philipp Benner <email address hidden>

* uscan support
* package tags

2. By Philipp Benner <email address hidden>

* Fixed bugs in debian/rules and debian/control which prevented
  porting the package.
* Using -fPIC to build shared lib KDTree. (closes: #278959)

1. By Philipp Benner <email address hidden>

Import upstream version 1.30

Branch metadata

Branch format:
Branch format 7
Repository format:
Bazaar repository format 2a (needs bzr 1.16 or later)
Stacked on:
lp:ubuntu/lucid/python-biopython
This branch contains Public information 
Everyone can see this information.

Subscribers