lp:debian/squeeze/python-biopython

Created by James Westby and last modified
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10. By Philipp Benner <email address hidden>

New upstream release

9. By Philipp Benner <email address hidden>

New upstream release.

8. By Philipp Benner <email address hidden>

New upstream release.

7. By Philipp Benner <email address hidden>

Merged patch from ubuntu to make the package ready for
python2.6 (Closes: #543236).

6. By Philipp Benner <email address hidden>

* New upstream release
* debian/control:
  - moved python-martel back to section python (python packages do not
  use section oldlibs)
* debian/patches/02-fix-wise-test.patch
  - removed (merged with upstream)
* debian/control:
  - Changed the description of python-biopython-sql according to Peter Cock's
    suggestions.
  [Charles Plessy]

5. By Charles Plessy

* New upstream release.
  - uses NumPy rather than its precursor Numeric (Closes: #478457)
  - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
    Bio.IntelliGenetics are deprecated.
  - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
    and will be deprecated in a future release.
  - Bio.Fasta is also considered to be obsolete and will eventually be
    deprecated.
* debian/control:
  - added myself as Uploader.
  - depends on python-numpy instead of python-numeric-ext.
  - moved python-martel to oldlibs section, priority extra as it is
    deprecated, and indicate this in the description.
  - build-depend on python-mysqldb and wise for the tests after building.
* Use Debhelper 7 (debian/co{ntrol,mpat}).
* debian/copyright: added myself to the Hall of Fame and updated to latest
  draft of the machine-readable format.
* debian/watch: makes beta versions lower by prepending a tilde between
  numbers and letters (1.49b -> 1.49~b).
* mmCIF support enabled:
  - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
  - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
  - debian/control: build-depends on quilt.
* debian/python-biopython-doc.doc-base: corrected index name that was changed
  upstream.
* debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
  version of Wise.
* debian/rules: perform tests after build.

4. By Philipp Benner <email address hidden>

Removed dependency on python-numeric-ext since it is already in
the recommends field

3. By Philipp Benner <email address hidden>

* uscan support
* package tags

2. By Philipp Benner <email address hidden>

* Fixed bugs in debian/rules and debian/control which prevented
  porting the package.
* Using -fPIC to build shared lib KDTree. (closes: #278959)

1. By Philipp Benner <email address hidden>

Import upstream version 1.30

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