lp:debian/squeeze/python-biopython
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Branch information
- Owner:
- Ubuntu branches
- Status:
- Development
Recent revisions
- 7. By Philipp Benner <email address hidden>
-
Merged patch from ubuntu to make the package ready for
python2.6 (Closes: #543236). - 6. By Philipp Benner <email address hidden>
-
* New upstream release
* debian/control:
- moved python-martel back to section python (python packages do not
use section oldlibs)
* debian/patches/ 02-fix- wise-test. patch
- removed (merged with upstream)
* debian/control:
- Changed the description of python-biopython- sql according to Peter Cock's
suggestions.
[Charles Plessy] - 5. By Charles Plessy
-
* New upstream release.
- uses NumPy rather than its precursor Numeric (Closes: #478457)
- Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
Bio.IntelliGenetics are deprecated.
- Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
and will be deprecated in a future release.
- Bio.Fasta is also considered to be obsolete and will eventually be
deprecated.
* debian/control:
- added myself as Uploader.
- depends on python-numpy instead of python-numeric-ext.
- moved python-martel to oldlibs section, priority extra as it is
deprecated, and indicate this in the description.
- build-depend on python-mysqldb and wise for the tests after building.
* Use Debhelper 7 (debian/co{ntrol, mpat}).
* debian/copyright: added myself to the Hall of Fame and updated to latest
draft of the machine-readable format.
* debian/watch: makes beta versions lower by prepending a tilde between
numbers and letters (1.49b -> 1.49~b).
* mmCIF support enabled:
- debian/patches/ 01-enable- mmCIF.patch: as the name indicates ;)
- debian/rules: patch and unpatch through /usr/share/quilt/quilt. make.
- debian/control: build-depends on quilt.
* debian/python- biopython- doc.doc- base: corrected index name that was changed
upstream.
* debian/patches/ 02-fix- wise-test. patch: prevents tests failing with Debian's
version of Wise.
* debian/rules: perform tests after build. - 4. By Philipp Benner <email address hidden>
-
Removed dependency on python-numeric-ext since it is already in
the recommends field - 2. By Philipp Benner <email address hidden>
-
* Fixed bugs in debian/rules and debian/control which prevented
porting the package.
* Using -fPIC to build shared lib KDTree. (closes: #278959)
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