lp:debian/mummer

Created by James Westby and last modified
Get this branch:
bzr branch lp:debian/mummer
Members of Ubuntu branches can upload to this branch. Log in for directions.

Related bugs

Related blueprints

Branch information

Owner:
Ubuntu branches
Status:
Development

Recent revisions

8. By Andreas Tille

* Moved debian/upstream to debian/upstream/metadata
* Add some patches from mugsy enhancing functionality by adding two tools
* Add some patches from mugsy to include delta-filter -b for reporting
  duplications
* cme fix dpkg-control
* Remove SF privacy breach script from docs
* Fix manpage syntax and add missing manpage
* Propagate hardening options

7. By Andreas Tille

* debian/enable_building_with_tetex.patch: enable building with recent
  tetex by changing the layout slightly (s/a4wide/a4/)
  Closes: #669521
* debian/control: Standards-Version: 3.9.3 (no changes needed)
* Debhelper 9 (control+compat)

6. By Charles Plessy

* New upstream release adding -D and --banded option to nucmer.
* Updated debian/patches/02at_docs_web.diff.
* Corrected VCS URLs (debian/control).
* Conforms to Policy 3.9.2 (debian/control, no other changes needed).
* Using Debhelper 8 (debian/control, debian/compat).
* Support DEB_BUILD_OPTIONS via Debhelper (debian/rules).
* Use dpkg source format 3.0 (quilt) as a patch system (debian/rules,
  debian/control, debian/source/format).
* Simplify debian/rules using dh.
* Pass Dpkg build flags in CFLAGS (debian/rules).

5. By Andreas Tille

[ Andreas Tille ]
* Make sure scripts will use the installation path instead of
  the temporary build path
  Closes: #575105
* Make real use of debian/sh-replacement-scripts and drop csh
  (build-)dependency
* incremented Standards-Version to reflect concordance with Debian Policy
  3.8.4 (no changes needed).
* install tandem-repeat.awk which was lacking from installation
  previousely

[ Charles Plessy ]
* Updated upstream-metadata.yaml to use simple key=value form
  instead of BibTeX entry

4. By Charles Plessy

* New upstream release:
  3.22
    - Significant 'dnadiff' bug fixes.
    - Unaligned contig output format switched to match show-diff format.
    - Dynamic memory allocation for run-mummer1.
    - Turned off output of the near useless .cluster files from nucmer and
      promer (let us know if you still want them).
  3.21
    - gcc compatibility fix.
* debian/get-orig-source: rename mutilated upstream tarball.
* debian/control:
  - incremented Standards-Version to reflect concordance with Debian Policy
    3.8.3 (no changes needed).
  - mummer-docs depends on ${misc:Depends}.
  - dropped versionned dependencies when they are even satisfied in oldstable.
  - dropped dependency on CDBS and patchutils, and added dependency on quilt.
  - using Debhelper 7 (debian/compat).
  - build-depend on csh for correct interpreter path detection.
* debian/patches:
  - replaces some Makefile patches by environment variables in debian/rules.
  - replaced 02at_scripts.diff by separate files in sh-replacement-scripts.
  - added a series file to use Quilt.
  - dropped the patch ‘01sm_src_tigr.diff’ that allowed to use MUMmer on
    computers with less that 512 Mo of memory and is now obsoleted by
    this release.
  - refreshed the 02at_docs_web.diff patch that redirects the links for the
    suppressed PDF files to the upstream website.
* debian/rules converted to debhelper (the build system is too odd to be
  handled gently by CDBS without patches).
* Mangled ‘~dfsg’ from the Debian version number in debian/watch.
* Converted debian/copyright to a machine-readable format.
* Documented the PDF deletion and the patching in ‘debian/README.source’.
* Turned the get-orig-source shell script into a debian/rule target.
* Added an experimental collection of upstream metadata in YAML format
  (debian/upstream-metadata.yaml).

3. By Charles Plessy

* Changed the doc-base section according to the new policy.
* Added myself to the `Uploaders' field in `debian/control'.
* Removed `debian/mummer.dirs', that was only creating empty directories.

2. By Andreas Tille

* Initial Release (Closes: Bug#201761).
  Thanks to Steffen Moeller <email address hidden> who
  prepared a package for version 3.17 and just some
  cleanups were left.
* New Standards-Version (no changes needed)
* Switched to cdbs to simplify handling of patches
* debian/compat: 5

1. By Andreas Tille

Import upstream version 3.19

Branch metadata

Branch format:
Branch format 7
Repository format:
Bazaar repository format 2a (needs bzr 1.16 or later)
Stacked on:
lp:debian/squeeze/mummer
This branch contains Public information 
Everyone can see this information.

Subscribers