lp:debian/experimental/ncbi-tools6

Created by James Westby and last modified
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7. By Aaron M. Ucko

* New upstream release; the upgrade to BLAST 2.2.24 (from 2.2.21) should
  address a formatdb regression. (LP: #586219.)
* Uploading to experimental because squeeze is frozen.
* debian/rules
  - Clean up compilation settings; in particular, use dpkg-buildflags rather
    than relying on dpkg-buildpackage to have set CFLAGS appropriately.
  - (clean): restore expected empty directories if necessary,
    for compatibility with VCSes (notably git) that don't track them.
  - (install-indep-stamp): adapt to new ncbilogo.ico contents.
  - (VIB): add asndisc, as upstream takes care to publish binaries thereof.
* debian/ncbi-tools6.install: likewise add asndisc.
* (debian/).gitignore: Ignore content generated during build.
* debian/lib{ncbi6,vibrant6a}.symbols: update for latest release.
* make/makenet.unx: don't link asndisc against extraneous libraries.
* doc/man/*.1: update for latest release.
* doc/man/asndisc.1: throw together a man page for asndisc.
* doc/man/cleanasn.1: fix SEE ALSO formatting.
* debian/control:
  - bump dpkg-dev build-dep to >= 1.15.7 for dpkg-buildflags.
  - Standards-Version: 3.9.1 (already compliant).
  - note switch to git-mediated Debian-Med team maintenance.

6. By Aaron M. Ucko

* debian/control: per Lintian's advice, depend on ${misc:Depends} across
  the board, in case Debhelper ever populates it.
* debian/{control,rules}: split newly added large BLAST databases into a
  new ncbi-rrna-data package to keep ncbi-data to a reasonable size.

5. By Aaron M. Ucko

tools/readdb.c: enable madvise()-based code on all glibc (hence all
Debian) systems, not just Linux. (Closes: #490437.)

4. By Aaron M. Ucko

* New upstream release.
* Don't bother linking against indirectly used system libraries.
* Update man pages.

3. By Aaron M. Ucko

* Fix FTBFS under GCC 4.0 caused by inconsistent use of "static" on
  functions. (Closes: #295110.)
* Add a watch file, now that we can. (Upstream's layout needs version=3.)

2. By Aaron M. Ucko

Whoops, ncbi-data should replace pre-split versions of ncbi-tools6.

1. By Aaron M. Ucko

Import upstream version 6.1.20011220a

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