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1045. By Tomasz Parkoła on 2011-03-03

Section for GraphML output added in the documentation

1044. By Tomasz Parkoła on 2011-03-03

GraphML export added.

1043. By Gregor Middell on 2011-03-02

mvn-3-compatible site generation

1042. By Gregor Middell on 2011-03-01

excluded legacy module from build

1041. By Gregor Middell on 2011-03-01

moved graphviz server to separate module; housekeeping stuff

1040. By Ronald Haentjens Dekker on 2011-02-27

[RHD] Updated ApiController to new CollateX Core API

1039. By Ronald Haentjens Dekker on 2011-02-27

[RHD] Updated alignment template to new CollateX Core API

1038. By Ronald Haentjens Dekker on 2011-02-26

[RHD] Made more transposition use cases work

1037. By Ronald Haentjens Dekker on 2011-02-26

[RHD] Reenabled previously broken example

1036. By Ronald Haentjens Dekker on 2011-02-26

[RHD]
- Fixed broken use case with transposition
- Cleaned up Sequence class
- Cleaned up Tranposition2 class
- Renamed IRow.rowToString() method to just toString()
- Cleaned up alignment unit tests; placed all the relevant tests in the same package and placed all the old tests in a separate package