Created by Jon Hill on 2013-09-27 and last modified on 2017-01-11
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STK Developers
Supertree Toolkit

Recent revisions

16. By Jon Hill on 2017-01-11

 * Minor bug fixes
 * Sorting packages
 * Adding weights to matrix
 * Script for supertree support
 * Starting to add taxonomic intelligence

15. By Jon Hill on 2014-12-18

  * New funcitonality to create matrix from trees via command line
  * New tutorial material based on workshop
  * Minor bug fixes

14. By Jon Hill on 2014-12-03

* Trees now have names to make it easier to identify
* Clearer error messages when parsing trees
* A number of minor bug fixes
* Fixes to import and export trees
* Fixes to the mac port to allow command line interaction

13. By Jon Hill on 2014-06-18

* Bug fixes to substitutions
* New option on subs to match taxa at genera level
* Permute trees now outputs in directories
* Bug fix to weighted TNT matrices
* Clean up of schema

12. By Jon Hill on 2014-02-27

  * Adding weights to TNT matrices
  * Bug fixes on parsing bibtex files
  * Minor manual fixes
  * Option to remove outgroups when creating a matrix
  * Tweaks to some scripts

11. By Jon Hill on 2014-01-09

* Minor bug fixes
* Update to tutorial data and text
* Adding more user aids in form of messages

10. By Jon Hill on 2013-12-16

* Increased usefullness of error message for GUI and CLI
* Minor corrections to tutorial and manual
* Update to embedded documentation
* Fix to Hennig I/O
* Fix to import CSV to handle excel-created csv files

9. By Jon Hill on 2013-11-19

* Adding command line to Mac version
* Fixing numerous small bugs
* Adding tutorial and data
* More auxilary scripts, including taxonomy
* Adding optional taxonomy tree to create_matrix
* MRPOutgroup to MRP_Outgroup

8. By Jon Hill on 2013-10-23

  * Fixing mac compatability
  * Fixing bugs in bibliography import for inbook and incollection
  * Adding script for creating a MacOS dmg installer

7. By Jon Hill on 2013-10-15

Minor update to Mac install script

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