lp:~pefarrell/dolfin-adjoint/fix-ode

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755. By Patrick Farrell on 2013-07-05

Add FitzHugh-Nagumo model. Not working yet because it depends on some library I don't have.

754. By James R. Maddison <email address hidden> on 2013-07-03

A little more Expression tidying

753. By James R. Maddison <email address hidden> on 2013-07-03

Minor bugfixes and test tweaks

- Bugfix for rare reproducibility issue with split pre-assembled bilinear forms
- Bugfix for dolfin_adjoint_timestepping with FEniCS 1.0
- Bugfix for TimeFunctional s with initial time level dependencies and disk checkpointing
- Bugfix to single layer QG model (FEMQUOD) configuration
- Fixes to the navier_stokes_fe test for FEniCS 1.0
- Tidy up use of Expression s
- Remove some colour from standard output, emit DOLFIN warnings

752. By Patrick Farrell on 2013-07-02

Make sure KrylovSolver has a set_transpose_nullspace before we ever try to call it.

751. By Simon Funke on 2013-06-27

Weaken the scipy.optimize version requirement to 0.11 (before was 0.12) as long as the user does not use basin hopping.

750. By Patrick Farrell on 2013-06-27

Get rid of some unnecessary imports, and we now depend on scipy as well in the Debian package.

749. By Patrick Farrell on 2013-06-27

Bump the version number in the changelog

748. By Simon Funke on 2013-06-27

The basinhopping optimisation algorithm requires scipy.optimize >= 0.12.
This commit updates the deprecated warning message in case an old scipy version is installed.

Thanks for Johannes and Gabriel for the bug report.

747. By Simon Funke on 2013-06-26

add support for the global optimisation algorithm "basin hopping"

746. By Patrick Farrell on 2013-06-26

Clear the expressions cache in adj_reset.