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560. By Nick Papior on 2016-08-08

Updated documentation of the diag part.

More flags are converted into the new fdfentry method.

Fixed references for the transiesta electrode setup
and the mixing variables.
One should use the fdfindex* variant for sub-options in
blocks.

559. By Nick Papior on 2016-08-06

Fixed a few remaining things of the documentation

Added documentation at the top of the siesta.tex
file. There a short explanation of the simple
mechanisms for writing new documentation is created.

Added nag package which will complain about certain
use of ancient commands.

558. By Nick Papior on 2016-08-05

Updated date for the documentation

557. By Nick Papior on 2016-08-05

Added PEXSI reference, changed PEXSI documentation to new style

Fixed minor things in the fdf setup for the manual in TeX.

556. By Nick Papior on 2016-08-05

Updated release.sh, updated NOTES, added Ramon as contributor

555. By Nick Papior on 2016-08-05

Added tags and updated release.sh

Also moved branch-changes into NOTES.documentation

554. By Nick Papior on 2016-08-05

Merged trunk-540

553. By Nick Papior on 2016-08-04

Added Docs/release.sh script for easy creation of tar.gz

This script enables easier release tar.gz files with a consistent
format.
The main functionality is that it will create a folder:
   siesta-releases
in the main folder where it will create a branch at the specified
tag. It will subsequently build the documentation and create
any necessary changes to the code that is necessary before
making the code available publicly.

This script is provided by Nick R. Papior

552. By Nick Papior on 2016-08-04

Updated documentation for change of list in fdf

Added documentation of PEXSI

Added documentation of Accuracy control and principal
cell connections.

551. By Nick Papior on 2016-07-29

Merged trunk

Added documentation for fdict and ncdf