lp:~ma5dev/madanalysis5/v1.9_beta

.bzrignore (+24/-0)
bin/ma5 (+16/-4)
doc/expert_mode/main_expert.tex (+19/-9)
doc/normal_mode/main_normal.bib (+923/-1010)
doc/normal_mode/main_normal.tex (+61/-6)
madanalysis/IOinterface/delphescard_checker.py (+4/-2)
madanalysis/IOinterface/folder_writer.py (+4/-2)
madanalysis/IOinterface/histo_matplotlib_producer.py (+4/-4)
madanalysis/IOinterface/histo_root_producer.py (+3/-3)
madanalysis/IOinterface/html_report_writer.py (+5/-1)
madanalysis/IOinterface/html_style_writer.py (+1/-0)
madanalysis/IOinterface/job_reader.py (+1/-1)
madanalysis/IOinterface/job_writer.py (+40/-24)
madanalysis/IOinterface/latex_report_writer.py (+4/-1)
madanalysis/IOinterface/layout_writer.py (+1/-1)
madanalysis/IOinterface/library_writer.py (+4/-3)
madanalysis/IOinterface/madgraph_interface.py (+12/-7)
madanalysis/IOinterface/multiparticle_reader.py (+1/-0)
madanalysis/IOinterface/particle_reader.py (+1/-0)
madanalysis/IOinterface/png_reader.py (+27/-16)
madanalysis/IOinterface/text_file_reader.py (+1/-0)
madanalysis/IOinterface/text_file_writer.py (+1/-0)
madanalysis/IOinterface/text_report.py (+3/-1)
madanalysis/IOinterface/ufo_reader.py (+2/-0)
madanalysis/UpdateNotes.txt (+127/-0)
madanalysis/build/makefile_writer.py (+2/-0)
madanalysis/build/setup_writer.py (+2/-0)
madanalysis/configuration/beauty_identification.py (+2/-1)
madanalysis/configuration/clustering_antikt.py (+3/-2)
madanalysis/configuration/clustering_cambridge.py (+3/-2)
madanalysis/configuration/clustering_cdfjetclu.py (+2/-1)
madanalysis/configuration/clustering_cdfmidpoint.py (+2/-1)
madanalysis/configuration/clustering_configuration.py (+13/-3)
madanalysis/configuration/clustering_genkt.py (+3/-2)
madanalysis/configuration/clustering_gridjet.py (+2/-1)
madanalysis/configuration/clustering_kt.py (+3/-2)
madanalysis/configuration/clustering_siscone.py (+3/-2)
madanalysis/configuration/delphesMA5tune_configuration.py (+2/-1)
madanalysis/configuration/delphes_configuration.py (+2/-1)
madanalysis/configuration/fastsim_configuration.py (+4/-3)
madanalysis/configuration/fom_configuration.py (+3/-2)
madanalysis/configuration/isolation_cone.py (+2/-1)
madanalysis/configuration/isolation_configuration.py (+2/-1)
madanalysis/configuration/isolation_sumpt.py (+2/-1)
madanalysis/configuration/merging_configuration.py (+2/-1)
madanalysis/configuration/recast_configuration.py (+153/-29)
madanalysis/configuration/tau_identification.py (+2/-1)
madanalysis/core/expert_mode.py (+6/-4)
madanalysis/core/launcher.py (+8/-6)
madanalysis/core/library_builder.py (+1/-1)
madanalysis/core/main.py (+7/-2)
madanalysis/core/script_stack.py (+2/-2)
madanalysis/dataset/dataset.py (+2/-1)
madanalysis/dataset/dataset_collection.py (+6/-3)
madanalysis/dataset/sample_info.py (+1/-1)
madanalysis/enumeration/argument_type.py (+8/-4)
madanalysis/enumeration/backstyle_type.py (+20/-16)
madanalysis/enumeration/color_type.py (+29/-23)
madanalysis/enumeration/combination_type.py (+18/-12)
madanalysis/enumeration/connector_type.py (+17/-12)
madanalysis/enumeration/cut_type.py (+11/-6)
madanalysis/enumeration/detect_status_type.py (+7/-3)
madanalysis/enumeration/font_type.py (+18/-13)
madanalysis/enumeration/graphic_render_type.py (+10/-5)
madanalysis/enumeration/linestyle_type.py (+17/-11)
madanalysis/enumeration/ma5_running_type.py (+8/-3)
madanalysis/enumeration/normalize_type.py (+8/-3)
madanalysis/enumeration/observable_type.py (+64/-53)
madanalysis/enumeration/operator_type.py (+20/-15)
madanalysis/enumeration/report_format_type.py (+21/-15)
madanalysis/enumeration/sb_ratio_type.py (+12/-7)
madanalysis/enumeration/script_type.py (+24/-19)
madanalysis/enumeration/special_particle.py (+8/-3)
madanalysis/enumeration/stacking_method_type.py (+8/-3)
madanalysis/enumeration/uncertainty_type.py (+8/-3)
madanalysis/fastsim/ast.py (+6/-3)
madanalysis/fastsim/ast_leaf.py (+1/-0)
madanalysis/fastsim/fastsim.py (+104/-17)
madanalysis/fastsim/recoefficiency.py (+5/-4)
madanalysis/fastsim/scaling.py (+104/-0)
madanalysis/fastsim/smearer.py (+9/-8)
madanalysis/fastsim/tagger.py (+4/-3)
madanalysis/install/detector_manager.py (+1/-0)
madanalysis/install/install_delphes.py (+49/-8)
madanalysis/install/install_fastjet.py (+2/-0)
madanalysis/install/install_fastjetcontrib.py (+3/-1)
madanalysis/install/install_gnuplot.py (+1/-0)
madanalysis/install/install_manager.py (+16/-16)
madanalysis/install/install_matplotlib.py (+1/-0)
madanalysis/install/install_numpy.py (+1/-0)
madanalysis/install/install_pad.py (+90/-113)
madanalysis/install/install_pyhf.py (+55/-39)
madanalysis/install/install_root.py (+1/-0)
madanalysis/install/install_samples.py (+2/-1)
madanalysis/install/install_service.py (+24/-24)
madanalysis/install/install_simplify.py (+120/-0)
madanalysis/install/install_zlib.py (+1/-0)
madanalysis/interpreter/cmd_base.py (+2/-0)
madanalysis/interpreter/cmd_cut.py (+3/-1)
madanalysis/interpreter/cmd_define.py (+21/-4)
madanalysis/interpreter/cmd_define_region.py (+1/-0)
madanalysis/interpreter/cmd_display.py (+4/-3)
madanalysis/interpreter/cmd_display_datasets.py (+1/-0)
madanalysis/interpreter/cmd_display_multiparticles.py (+1/-0)
madanalysis/interpreter/cmd_display_particles.py (+1/-0)
madanalysis/interpreter/cmd_display_regions.py (+1/-0)
madanalysis/interpreter/cmd_import.py (+6/-2)
madanalysis/interpreter/cmd_install.py (+68/-15)
madanalysis/interpreter/cmd_open.py (+1/-0)
madanalysis/interpreter/cmd_plot.py (+3/-1)
madanalysis/interpreter/cmd_remove.py (+3/-1)
madanalysis/interpreter/cmd_reset.py (+3/-1)
madanalysis/interpreter/cmd_selection_base.py (+4/-0)
madanalysis/interpreter/cmd_set.py (+39/-0)
madanalysis/interpreter/cmd_submit.py (+5/-8)
madanalysis/interpreter/cmd_swap.py (+2/-0)
madanalysis/interpreter/history.py (+1/-0)
madanalysis/interpreter/interpreter.py (+9/-6)
madanalysis/interpreter/interpreter_base.py (+3/-1)
madanalysis/interpreter/ma5_interpreter.py (+16/-5)
madanalysis/interpreter/timer.py (+1/-0)
madanalysis/job/job_candidate_cut.py (+2/-0)
madanalysis/job/job_event_cut.py (+3/-1)
madanalysis/job/job_execute.py (+2/-0)
madanalysis/job/job_finalize.py (+1/-0)
madanalysis/job/job_header.py (+5/-7)
madanalysis/job/job_initialize.py (+1/-0)
madanalysis/job/job_main.py (+1/-0)
madanalysis/job/job_particle.py (+2/-0)
madanalysis/job/job_plot.py (+2/-0)
madanalysis/job/job_smearer_reco_header.py (+69/-13)
madanalysis/job/job_smearer_reco_main.py (+99/-5)
madanalysis/job/job_tagger_header.py (+11/-0)
madanalysis/layout/cut_info.py (+1/-0)
madanalysis/layout/cutflow.py (+2/-0)
madanalysis/layout/cutflow_for_dataset.py (+2/-0)
madanalysis/layout/fom_calculation.py (+1/-0)
madanalysis/layout/histogram.py (+2/-0)
madanalysis/layout/histogram_core.py (+2/-0)
madanalysis/layout/histogram_frequency.py (+2/-0)
madanalysis/layout/histogram_frequency_core.py (+1/-0)
madanalysis/layout/histogram_logx.py (+2/-0)
madanalysis/layout/layout.py (+2/-0)
madanalysis/layout/measure.py (+1/-0)
madanalysis/layout/merging_plots.py (+24/-10)
madanalysis/layout/merging_plots_for_dataset.py (+1/-0)
madanalysis/layout/plotflow.py (+26/-11)
madanalysis/layout/plotflow_for_dataset.py (+2/-0)
madanalysis/misc/freeze_environment.py (+1/-0)
madanalysis/misc/histfactory_reader.py (+97/-70)
madanalysis/misc/run_recast.py (+835/-523)
madanalysis/misc/simplified_likelihood.py (+6/-25)
madanalysis/multiparticle/extraparticle.py (+2/-1)
madanalysis/multiparticle/multiparticle.py (+2/-0)
madanalysis/multiparticle/multiparticle_collection.py (+10/-6)
madanalysis/multiparticle/particle_combination.py (+2/-0)
madanalysis/multiparticle/particle_object.py (+2/-0)
madanalysis/observable/observable_base.py (+1/-0)
madanalysis/observable/observable_list.py (+168/-0)
madanalysis/observable/observable_manager.py (+4/-3)
madanalysis/region/region.py (+1/-0)
madanalysis/region/region_collection.py (+4/-1)
madanalysis/selection/condition_connector.py (+1/-0)
madanalysis/selection/condition_sequence.py (+2/-0)
madanalysis/selection/condition_type.py (+2/-0)
madanalysis/selection/cut.py (+4/-3)
madanalysis/selection/histogram.py (+8/-5)
madanalysis/selection/instance_name.py (+3/-3)
madanalysis/selection/selection.py (+5/-2)
madanalysis/system/architecture_info.py (+7/-4)
madanalysis/system/checkup.py (+3/-0)
madanalysis/system/config_checker.py (+3/-3)
madanalysis/system/detect_dvipdf.py (+1/-1)
madanalysis/system/detect_fastjet.py (+1/-1)
madanalysis/system/detect_gnuplot.py (+1/-1)
madanalysis/system/detect_gpp.py (+1/-1)
madanalysis/system/detect_latex.py (+1/-1)
madanalysis/system/detect_make.py (+1/-1)
madanalysis/system/detect_manager.py (+66/-46)
madanalysis/system/detect_matplotlib.py (+1/-1)
madanalysis/system/detect_pad.py (+6/-10)
madanalysis/system/detect_pdflatex.py (+1/-1)
madanalysis/system/detect_pyhf.py (+15/-11)
madanalysis/system/detect_python.py (+8/-8)
madanalysis/system/detect_root.py (+3/-2)
madanalysis/system/detect_root_graphical.py (+1/-1)
madanalysis/system/detect_scipy.py (+8/-2)
madanalysis/system/detect_simplify.py (+82/-0)
madanalysis/system/detect_zlib.py (+1/-1)
madanalysis/system/session_info.py (+2/-0)
madanalysis/system/user_info.py (+1/-0)
tools/ReportGenerator/Core/job_reader.py (+1/-1)
tools/ReportGenerator/Core/layout.py (+2/-0)
tools/ReportGenerator/Core/main.py (+5/-2)
tools/ReportGenerator/Services/chronometer.py (+1/-0)
tools/ReportGenerator/Services/colored_log.py (+1/-0)
tools/ReportGenerator/Services/fom_type.py (+1/-0)
tools/ReportGenerator/Services/shell_command.py (+14/-4)
tools/ReportGenerator/Services/string_tools.py (+2/-0)
tools/SampleAnalyzer/Commons/Base/ClusterAlgoBase.h (+15/-1)
tools/SampleAnalyzer/Commons/Base/Configuration.cpp (+2/-2)
tools/SampleAnalyzer/Commons/Base/SmearerBase.cpp (+216/-0)
tools/SampleAnalyzer/Commons/Base/SmearerBase.h (+169/-93)
tools/SampleAnalyzer/Commons/DataFormat/IsolationConeType.h (+29/-5)
tools/SampleAnalyzer/Commons/DataFormat/MCParticleFormat.h (+25/-7)
tools/SampleAnalyzer/Commons/DataFormat/ParticleBaseFormat.h (+28/-2)
tools/SampleAnalyzer/Commons/DataFormat/RecEventFormat.h (+3/-0)
tools/SampleAnalyzer/Commons/DataFormat/RecLeptonFormat.h (+33/-30)
tools/SampleAnalyzer/Commons/DataFormat/RecParticleFormat.h (+10/-1)
tools/SampleAnalyzer/Commons/DataFormat/RecPhotonFormat.h (+10/-0)
tools/SampleAnalyzer/Commons/DataFormat/RecTrackFormat.h (+17/-6)
tools/SampleAnalyzer/Commons/Service/LoopService.cpp (+1/-3)
tools/SampleAnalyzer/Commons/Service/LoopService.h (+7/-3)
tools/SampleAnalyzer/Commons/Vector/MARotation3axis.h (+2/-0)
tools/SampleAnalyzer/Interfaces/delphes/DelphesTreeReader.cpp (+0/-5)
tools/SampleAnalyzer/Interfaces/fastjet/ClusterAlgoFastJet.cpp (+41/-6)
tools/SampleAnalyzer/Interfaces/fastjet/ClusterAlgoStandard.cpp (+14/-0)
tools/SampleAnalyzer/Process/JetClustering/JetClusterer.cpp (+84/-8)
tools/SampleAnalyzer/Process/JetClustering/JetClusterer.h (+1/-0)
tools/SampleAnalyzer/Process/JetClustering/NullSmearer.h (+2/-61)
tools/SampleAnalyzer/Process/Reader/HEPMCReader.cpp (+3/-4)
tools/SampleAnalyzer/Process/Reader/LHEReader.cpp (+20/-3)
tools/SampleAnalyzer/newAnalyzer.py (+17/-14)