For 5.5 the index cardinality stats are unstable even with ANALYZE TABLE, innodb_stats_on_metadata=OFF, innodb_stats_sample_pages=30000, innodb_stats_auto_update=0. This is bug 1201802, and until it's fixed, the SHOW INDEXES have to be removed from there. 5.6 is OK.
For 5.5 the index cardinality stats are unstable even with ANALYZE TABLE, innodb_ stats_on_ metadata= OFF, innodb_ stats_sample_ pages=30000, innodb_ stats_auto_ update= 0. This is bug 1201802, and until it's fixed, the SHOW INDEXES have to be removed from there. 5.6 is OK.