Merge lp:~jtaylor/ubuntu/precise/python-numpy/merge-1.6 into lp:ubuntu/precise/python-numpy

[Julian Taylor]

merge numpy 1.6 from debian experimental into precise.
this merge would start the numpy transition, approved by mathias klose and barry warsaw.

numpy 1.6 is quite backward compatible with 1.5, only a few deprecated functions where removed.
A grep of the rdepends only showed two (maybe three) packages that need fixing:
veusz (fix available in unstable), nitime (looks like a simple fix), statsmodels (only used in testsuite, which succeeds so its probably no used)

18 packages using the C-api need rebuilding to be on the save side of abi compatibility and to get them to use the new features of dh_numpy.
http://people.canonical.com/~ubuntu-archive/transitions/numpy.html
They have been test rebuilt successfully.
The arch all packages do not need a rebuild.

I added the multiarch fix from this merge: https://code.launchpad.net/~jtaylor/ubuntu/precise/python-numpy/multiarch-fix-818867
Also the gfortran -shared patch was dropped, it is not needed anymore due to debhelper changes, one could readded it though to be on the safe side.

[Jani Monoses (jani)]

This seems to have uploaded, can you close it so it does not show up the the sponsoring needed list?
Thanks

=== removed directory '.pc/02_build_dotblas.patch'
=== removed directory '.pc/02_build_dotblas.patch/numpy'
=== removed directory '.pc/02_build_dotblas.patch/numpy/core'
=== removed file '.pc/02_build_dotblas.patch/numpy/core/setup.py'
--- .pc/02_build_dotblas.patch/numpy/core/setup.py	2010-12-24 00:14:25 +0000
+++ .pc/02_build_dotblas.patch/numpy/core/setup.py	1970-01-01 00:00:00 +0000
@@ -1,840 +0,0 @@
-import imp
-import os
-import sys
-import shutil
-from os.path import join
-from numpy.distutils import log
-from distutils.dep_util import newer
-from distutils.sysconfig import get_config_var
-import warnings
-import re
-
-from setup_common import *
-
-# Set to True to enable multiple file compilations (experimental)
-try:
-    os.environ['NPY_SEPARATE_COMPILATION']
-    ENABLE_SEPARATE_COMPILATION = True
-except KeyError:
-    ENABLE_SEPARATE_COMPILATION = False
-
-# XXX: ugly, we use a class to avoid calling twice some expensive functions in
-# config.h/numpyconfig.h. I don't see a better way because distutils force
-# config.h generation inside an Extension class, and as such sharing
-# configuration informations between extensions is not easy.
-# Using a pickled-based memoize does not work because config_cmd is an instance
-# method, which cPickle does not like.
-try:
-    import cPickle as _pik
-except ImportError:
-    import pickle as _pik
-import copy
-
-class CallOnceOnly(object):
-    def __init__(self):
-        self._check_types = None
-        self._check_ieee_macros = None
-        self._check_complex = None
-
-    def check_types(self, *a, **kw):
-        if self._check_types is None:
-            out = check_types(*a, **kw)
-            self._check_types = _pik.dumps(out)
-        else:
-            out = copy.deepcopy(_pik.loads(self._check_types))
-        return out
-
-    def check_ieee_macros(self, *a, **kw):
-        if self._check_ieee_macros is None:
-            out = check_ieee_macros(*a, **kw)
-            self._check_ieee_macros = _pik.dumps(out)
-        else:
-            out = copy.deepcopy(_pik.loads(self._check_ieee_macros))
-        return out
-
-    def check_complex(self, *a, **kw):
-        if self._check_complex is None:
-            out = check_complex(*a, **kw)
-            self._check_complex = _pik.dumps(out)
-        else:
-            out = copy.deepcopy(_pik.loads(self._check_complex))
-        return out
-
-PYTHON_HAS_UNICODE_WIDE = True
-
-def pythonlib_dir():
-    """return path where libpython* is."""
-    if sys.platform == 'win32':
-        return os.path.join(sys.prefix, "libs")
-    else:
-        return get_config_var('LIBDIR')
-
-def is_npy_no_signal():
-    """Return True if the NPY_NO_SIGNAL symbol must be defined in configuration
-    header."""
-    return sys.platform == 'win32'
-
-def is_npy_no_smp():
-    """Return True if the NPY_NO_SMP symbol must be defined in public
-    header (when SMP support cannot be reliably enabled)."""
-    # Python 2.3 causes a segfault when
-    #  trying to re-acquire the thread-state
-    #  which is done in error-handling
-    #  ufunc code.  NPY_ALLOW_C_API and friends
-    #  cause the segfault. So, we disable threading
-    #  for now.
-    if sys.version[:5] < '2.4.2':
-        nosmp = 1
-    else:
-        # Perhaps a fancier check is in order here.
-        #  so that threads are only enabled if there
-        #  are actually multiple CPUS? -- but
-        #  threaded code can be nice even on a single
-        #  CPU so that long-calculating code doesn't
-        #  block.
-        try:
-            nosmp = os.environ['NPY_NOSMP']
-            nosmp = 1
-        except KeyError:
-            nosmp = 0
-    return nosmp == 1
-
-def win32_checks(deflist):
-    from numpy.distutils.misc_util import get_build_architecture
-    a = get_build_architecture()
-
-    # Distutils hack on AMD64 on windows
-    print('BUILD_ARCHITECTURE: %r, os.name=%r, sys.platform=%r' % \
-          (a, os.name, sys.platform))
-    if a == 'AMD64':
-        deflist.append('DISTUTILS_USE_SDK')
-
-    # On win32, force long double format string to be 'g', not
-    # 'Lg', since the MS runtime does not support long double whose
-    # size is > sizeof(double)
-    if a == "Intel" or a == "AMD64":
-        deflist.append('FORCE_NO_LONG_DOUBLE_FORMATTING')
-
-def check_math_capabilities(config, moredefs, mathlibs):
-    def check_func(func_name):
-        return config.check_func(func_name, libraries=mathlibs,
-                                 decl=True, call=True)
-
-    def check_funcs_once(funcs_name):
-        decl = dict([(f, True) for f in funcs_name])
-        st = config.check_funcs_once(funcs_name, libraries=mathlibs,
-                                     decl=decl, call=decl)
-        if st:
-            moredefs.extend([fname2def(f) for f in funcs_name])
-        return st
-
-    def check_funcs(funcs_name):
-        # Use check_funcs_once first, and if it does not work, test func per
-        # func. Return success only if all the functions are available
-        if not check_funcs_once(funcs_name):
-            # Global check failed, check func per func
-            for f in funcs_name:
-                if check_func(f):
-                    moredefs.append(fname2def(f))
-            return 0
-        else:
-            return 1
-
-    #use_msvc = config.check_decl("_MSC_VER")
-
-    if not check_funcs_once(MANDATORY_FUNCS):
-        raise SystemError("One of the required function to build numpy is not"
-                " available (the list is %s)." % str(MANDATORY_FUNCS))
-
-    # Standard functions which may not be available and for which we have a
-    # replacement implementation. Note that some of these are C99 functions.
-
-    # XXX: hack to circumvent cpp pollution from python: python put its
-    # config.h in the public namespace, so we have a clash for the common
-    # functions we test. We remove every function tested by python's
-    # autoconf, hoping their own test are correct
-    if sys.version_info[:2] >= (2, 5):
-        for f in OPTIONAL_STDFUNCS_MAYBE:
-            if config.check_decl(fname2def(f),
-                        headers=["Python.h", "math.h"]):
-                OPTIONAL_STDFUNCS.remove(f)
-
-    check_funcs(OPTIONAL_STDFUNCS)
-
-    # C99 functions: float and long double versions
-    check_funcs(C99_FUNCS_SINGLE)
-    check_funcs(C99_FUNCS_EXTENDED)
-
-def check_complex(config, mathlibs):
-    priv = []
-    pub = []
-
-    # Check for complex support
-    st = config.check_header('complex.h')
-    if st:
-        priv.append('HAVE_COMPLEX_H')
-        pub.append('NPY_USE_C99_COMPLEX')
-
-        for t in C99_COMPLEX_TYPES:
-            st = config.check_type(t, headers=["complex.h"])
-            if st:
-                pub.append(('NPY_HAVE_%s' % type2def(t), 1))
-
-        def check_prec(prec):
-            flist = [f + prec for f in C99_COMPLEX_FUNCS]
-            decl = dict([(f, True) for f in flist])
-            if not config.check_funcs_once(flist, call=decl, decl=decl,
-                                           libraries=mathlibs):
-                for f in flist:
-                    if config.check_func(f, call=True, decl=True,
-                                         libraries=mathlibs):
-                        priv.append(fname2def(f))
-            else:
-                priv.extend([fname2def(f) for f in flist])
-
-        check_prec('')
-        check_prec('f')
-        check_prec('l')
-
-    return priv, pub
-
-def check_ieee_macros(config):
-    priv = []
-    pub = []
-
-    macros = []
-
-    def _add_decl(f):
-        priv.append(fname2def("decl_%s" % f))
-        pub.append('NPY_%s' % fname2def("decl_%s" % f))
-
-    # XXX: hack to circumvent cpp pollution from python: python put its
-    # config.h in the public namespace, so we have a clash for the common
-    # functions we test. We remove every function tested by python's
-    # autoconf, hoping their own test are correct
-    _macros = ["isnan", "isinf", "signbit", "isfinite"]
-    if sys.version_info[:2] >= (2, 6):
-        for f in _macros:
-            py_symbol = fname2def("decl_%s" % f)
-            already_declared = config.check_decl(py_symbol,
-                    headers=["Python.h", "math.h"])
-            if already_declared:
-                if config.check_macro_true(py_symbol,
-                        headers=["Python.h", "math.h"]):
-                    pub.append('NPY_%s' % fname2def("decl_%s" % f))
-            else:
-                macros.append(f)
-    else:
-        macros = _macros[:]
-    # Normally, isnan and isinf are macro (C99), but some platforms only have
-    # func, or both func and macro version. Check for macro only, and define
-    # replacement ones if not found.
-    # Note: including Python.h is necessary because it modifies some math.h
-    # definitions
-    for f in macros:
-        st = config.check_decl(f, headers = ["Python.h", "math.h"])
-        if st:
-            _add_decl(f)
-
-    return priv, pub
-
-def check_types(config_cmd, ext, build_dir):
-    private_defines = []
-    public_defines = []
-
-    # Expected size (in number of bytes) for each type. This is an
-    # optimization: those are only hints, and an exhaustive search for the size
-    # is done if the hints are wrong.
-    expected = {}
-    expected['short'] = [2]
-    expected['int'] = [4]
-    expected['long'] = [8, 4]
-    expected['float'] = [4]
-    expected['double'] = [8]
-    expected['long double'] = [8, 12, 16]
-    expected['Py_intptr_t'] = [4, 8]
-    expected['PY_LONG_LONG'] = [8]
-    expected['long long'] = [8]
-
-    # Check we have the python header (-dev* packages on Linux)
-    result = config_cmd.check_header('Python.h')
-    if not result:
-        raise SystemError(
-                "Cannot compile 'Python.h'. Perhaps you need to "\
-                "install python-dev|python-devel.")
-    res = config_cmd.check_header("endian.h")
-    if res:
-        private_defines.append(('HAVE_ENDIAN_H', 1))
-        public_defines.append(('NPY_HAVE_ENDIAN_H', 1))
-
-    # Check basic types sizes
-    for type in ('short', 'int', 'long'):
-        res = config_cmd.check_decl("SIZEOF_%s" % sym2def(type), headers = ["Python.h"])
-        if res:
-            public_defines.append(('NPY_SIZEOF_%s' % sym2def(type), "SIZEOF_%s" % sym2def(type)))
-        else:
-            res = config_cmd.check_type_size(type, expected=expected[type])
-            if res >= 0:
-                public_defines.append(('NPY_SIZEOF_%s' % sym2def(type), '%d' % res))
-            else:
-                raise SystemError("Checking sizeof (%s) failed !" % type)
-
-    for type in ('float', 'double', 'long double'):
-        already_declared = config_cmd.check_decl("SIZEOF_%s" % sym2def(type),
-                                                 headers = ["Python.h"])
-        res = config_cmd.check_type_size(type, expected=expected[type])
-        if res >= 0:
-            public_defines.append(('NPY_SIZEOF_%s' % sym2def(type), '%d' % res))
-            if not already_declared and not type == 'long double':
-                private_defines.append(('SIZEOF_%s' % sym2def(type), '%d' % res))
-        else:
-            raise SystemError("Checking sizeof (%s) failed !" % type)
-
-        # Compute size of corresponding complex type: used to check that our
-        # definition is binary compatible with C99 complex type (check done at
-        # build time in npy_common.h)
-        complex_def = "struct {%s __x; %s __y;}" % (type, type)
-        res = config_cmd.check_type_size(complex_def, expected=2*expected[type])
-        if res >= 0:
-            public_defines.append(('NPY_SIZEOF_COMPLEX_%s' % sym2def(type), '%d' % res))
-        else:
-            raise SystemError("Checking sizeof (%s) failed !" % complex_def)
-
-
-    for type in ('Py_intptr_t',):
-        res = config_cmd.check_type_size(type, headers=["Python.h"],
-                library_dirs=[pythonlib_dir()],
-                expected=expected[type])
-
-        if res >= 0:
-            private_defines.append(('SIZEOF_%s' % sym2def(type), '%d' % res))
-            public_defines.append(('NPY_SIZEOF_%s' % sym2def(type), '%d' % res))
-        else:
-            raise SystemError("Checking sizeof (%s) failed !" % type)
-
-    # We check declaration AND type because that's how distutils does it.
-    if config_cmd.check_decl('PY_LONG_LONG', headers=['Python.h']):
-        res = config_cmd.check_type_size('PY_LONG_LONG',  headers=['Python.h'],
-                library_dirs=[pythonlib_dir()],
-                expected=expected['PY_LONG_LONG'])
-        if res >= 0:
-            private_defines.append(('SIZEOF_%s' % sym2def('PY_LONG_LONG'), '%d' % res))
-            public_defines.append(('NPY_SIZEOF_%s' % sym2def('PY_LONG_LONG'), '%d' % res))
-        else:
-            raise SystemError("Checking sizeof (%s) failed !" % 'PY_LONG_LONG')
-
-        res = config_cmd.check_type_size('long long',
-                expected=expected['long long'])
-        if res >= 0:
-            #private_defines.append(('SIZEOF_%s' % sym2def('long long'), '%d' % res))
-            public_defines.append(('NPY_SIZEOF_%s' % sym2def('long long'), '%d' % res))
-        else:
-            raise SystemError("Checking sizeof (%s) failed !" % 'long long')
-
-    if not config_cmd.check_decl('CHAR_BIT', headers=['Python.h']):
-        raise RuntimeError(
-            "Config wo CHAR_BIT is not supported"\
-            ", please contact the maintainers")
-
-    return private_defines, public_defines
-
-def check_mathlib(config_cmd):
-    # Testing the C math library
-    mathlibs = []
-    mathlibs_choices = [[],['m'],['cpml']]
-    mathlib = os.environ.get('MATHLIB')
-    if mathlib:
-        mathlibs_choices.insert(0,mathlib.split(','))
-    for libs in mathlibs_choices:
-        if config_cmd.check_func("exp", libraries=libs, decl=True, call=True):
-            mathlibs = libs
-            break
-    else:
-        raise EnvironmentError("math library missing; rerun "
-                               "setup.py after setting the "
-                               "MATHLIB env variable")
-    return mathlibs
-
-def visibility_define(config):
-    """Return the define value to use for NPY_VISIBILITY_HIDDEN (may be empty
-    string)."""
-    if config.check_compiler_gcc4():
-        return '__attribute__((visibility("hidden")))'
-    else:
-        return ''
-
-def configuration(parent_package='',top_path=None):
-    from numpy.distutils.misc_util import Configuration,dot_join
-    from numpy.distutils.system_info import get_info, default_lib_dirs
-
-    config = Configuration('core',parent_package,top_path)
-    local_dir = config.local_path
-    codegen_dir = join(local_dir,'code_generators')
-
-    if is_released(config):
-        warnings.simplefilter('error', MismatchCAPIWarning)
-
-    # Check whether we have a mismatch between the set C API VERSION and the
-    # actual C API VERSION
-    check_api_version(C_API_VERSION, codegen_dir)
-
-    generate_umath_py = join(codegen_dir,'generate_umath.py')
-    n = dot_join(config.name,'generate_umath')
-    generate_umath = imp.load_module('_'.join(n.split('.')),
-                                     open(generate_umath_py,'U'),generate_umath_py,
-                                     ('.py','U',1))
-
-    header_dir = 'include/numpy' # this is relative to config.path_in_package
-
-    cocache = CallOnceOnly()
-
-    def generate_config_h(ext, build_dir):
-        target = join(build_dir,header_dir,'config.h')
-        d = os.path.dirname(target)
-        if not os.path.exists(d):
-            os.makedirs(d)
-
-        if newer(__file__,target):
-            config_cmd = config.get_config_cmd()
-            log.info('Generating %s',target)
-
-            # Check sizeof
-            moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
-
-            # Check math library and C99 math funcs availability
-            mathlibs = check_mathlib(config_cmd)
-            moredefs.append(('MATHLIB',','.join(mathlibs)))
-
-            check_math_capabilities(config_cmd, moredefs, mathlibs)
-            moredefs.extend(cocache.check_ieee_macros(config_cmd)[0])
-            moredefs.extend(cocache.check_complex(config_cmd, mathlibs)[0])
-
-            # Signal check
-            if is_npy_no_signal():
-                moredefs.append('__NPY_PRIVATE_NO_SIGNAL')
-
-            # Windows checks
-            if sys.platform=='win32' or os.name=='nt':
-                win32_checks(moredefs)
-
-            # Inline check
-            inline = config_cmd.check_inline()
-
-            # Check whether we need our own wide character support
-            if not config_cmd.check_decl('Py_UNICODE_WIDE', headers=['Python.h']):
-                PYTHON_HAS_UNICODE_WIDE = True
-            else:
-                PYTHON_HAS_UNICODE_WIDE = False
-                
-            if ENABLE_SEPARATE_COMPILATION:
-                moredefs.append(('ENABLE_SEPARATE_COMPILATION', 1))
-
-            # Get long double representation
-            if sys.platform != 'darwin':
-                rep = check_long_double_representation(config_cmd)
-                if rep in ['INTEL_EXTENDED_12_BYTES_LE',
-                           'INTEL_EXTENDED_16_BYTES_LE',
-                           'IEEE_QUAD_LE', 'IEEE_QUAD_BE',
-                           'IEEE_DOUBLE_LE', 'IEEE_DOUBLE_BE',
-                           'DOUBLE_DOUBLE_BE']:
-                    moredefs.append(('HAVE_LDOUBLE_%s' % rep, 1))
-                else:
-                    raise ValueError("Unrecognized long double format: %s" % rep)
-
-            # Py3K check
-            if sys.version_info[0] == 3:
-                moredefs.append(('NPY_PY3K', 1))
-
-            # Generate the config.h file from moredefs
-            target_f = open(target, 'w')
-            for d in moredefs:
-                if isinstance(d,str):
-                    target_f.write('#define %s\n' % (d))
-                else:
-                    target_f.write('#define %s %s\n' % (d[0],d[1]))
-
-            # define inline to our keyword, or nothing
-            target_f.write('#ifndef __cplusplus\n')
-            if inline == 'inline':
-                target_f.write('/* #undef inline */\n')
-            else:
-                target_f.write('#define inline %s\n' % inline)
-            target_f.write('#endif\n')
-
-            # add the guard to make sure config.h is never included directly,
-            # but always through npy_config.h
-            target_f.write("""
-#ifndef _NPY_NPY_CONFIG_H_
-#error config.h should never be included directly, include npy_config.h instead
-#endif
-""")
-
-            target_f.close()
-            print('File:',target)
-            target_f = open(target)
-            print(target_f.read())
-            target_f.close()
-            print('EOF')
-        else:
-            mathlibs = []
-            target_f = open(target)
-            for line in target_f.readlines():
-                s = '#define MATHLIB'
-                if line.startswith(s):
-                    value = line[len(s):].strip()
-                    if value:
-                        mathlibs.extend(value.split(','))
-            target_f.close()
-
-        # Ugly: this can be called within a library and not an extension,
-        # in which case there is no libraries attributes (and none is
-        # needed).
-        if hasattr(ext, 'libraries'):
-            ext.libraries.extend(mathlibs)
-
-        incl_dir = os.path.dirname(target)
-        if incl_dir not in config.numpy_include_dirs:
-            config.numpy_include_dirs.append(incl_dir)
-
-        return target
-
-    def generate_numpyconfig_h(ext, build_dir):
-        """Depends on config.h: generate_config_h has to be called before !"""
-        target = join(build_dir,header_dir,'_numpyconfig.h')
-        d = os.path.dirname(target)
-        if not os.path.exists(d):
-            os.makedirs(d)
-        if newer(__file__,target):
-            config_cmd = config.get_config_cmd()
-            log.info('Generating %s',target)
-
-            # Check sizeof
-            ignored, moredefs = cocache.check_types(config_cmd, ext, build_dir)
-
-            if is_npy_no_signal():
-                moredefs.append(('NPY_NO_SIGNAL', 1))
-
-            if is_npy_no_smp():
-                moredefs.append(('NPY_NO_SMP', 1))
-            else:
-                moredefs.append(('NPY_NO_SMP', 0))
-
-            mathlibs = check_mathlib(config_cmd)
-            moredefs.extend(cocache.check_ieee_macros(config_cmd)[1])
-            moredefs.extend(cocache.check_complex(config_cmd, mathlibs)[1])
-
-            if ENABLE_SEPARATE_COMPILATION:
-                moredefs.append(('NPY_ENABLE_SEPARATE_COMPILATION', 1))
-
-            # Check wether we can use inttypes (C99) formats
-            if config_cmd.check_decl('PRIdPTR', headers = ['inttypes.h']):
-                moredefs.append(('NPY_USE_C99_FORMATS', 1))
-
-            # visibility check
-            hidden_visibility = visibility_define(config_cmd)
-            moredefs.append(('NPY_VISIBILITY_HIDDEN', hidden_visibility))
-
-            # Add the C API/ABI versions
-            moredefs.append(('NPY_ABI_VERSION', '0x%.8X' % C_ABI_VERSION))
-            moredefs.append(('NPY_API_VERSION', '0x%.8X' % C_API_VERSION))
-
-            # Add moredefs to header
-            target_f = open(target, 'w')
-            for d in moredefs:
-                if isinstance(d,str):
-                    target_f.write('#define %s\n' % (d))
-                else:
-                    target_f.write('#define %s %s\n' % (d[0],d[1]))
-
-            # Define __STDC_FORMAT_MACROS
-            target_f.write("""
-#ifndef __STDC_FORMAT_MACROS
-#define __STDC_FORMAT_MACROS 1
-#endif
-""")
-            target_f.close()
-
-            # Dump the numpyconfig.h header to stdout
-            print('File: %s' % target)
-            target_f = open(target)
-            print(target_f.read())
-            target_f.close()
-            print('EOF')
-        config.add_data_files((header_dir, target))
-        return target
-
-    def generate_api_func(module_name):
-        def generate_api(ext, build_dir):
-            script = join(codegen_dir, module_name + '.py')
-            sys.path.insert(0, codegen_dir)
-            try:
-                m = __import__(module_name)
-                log.info('executing %s', script)
-                h_file, c_file, doc_file = m.generate_api(os.path.join(build_dir, header_dir))
-            finally:
-                del sys.path[0]
-            config.add_data_files((header_dir, h_file),
-                                  (header_dir, doc_file))
-            return (h_file,)
-        return generate_api
-
-    generate_numpy_api = generate_api_func('generate_numpy_api')
-    generate_ufunc_api = generate_api_func('generate_ufunc_api')
-
-    config.add_include_dirs(join(local_dir, "src", "private"))
-    config.add_include_dirs(join(local_dir, "src"))
-    config.add_include_dirs(join(local_dir))
-    # Multiarray version: this function is needed to build foo.c from foo.c.src
-    # when foo.c is included in another file and as such not in the src
-    # argument of build_ext command
-    def generate_multiarray_templated_sources(ext, build_dir):
-        from numpy.distutils.misc_util import get_cmd
-
-        subpath = join('src', 'multiarray')
-        sources = [join(local_dir, subpath, 'scalartypes.c.src'),
-                   join(local_dir, subpath, 'arraytypes.c.src')]
-
-        # numpy.distutils generate .c from .c.src in weird directories, we have
-        # to add them there as they depend on the build_dir
-        config.add_include_dirs(join(build_dir, subpath))
-
-        cmd = get_cmd('build_src')
-        cmd.ensure_finalized()
-
-        cmd.template_sources(sources, ext)
-
-    # umath version: this function is needed to build foo.c from foo.c.src
-    # when foo.c is included in another file and as such not in the src
-    # argument of build_ext command
-    def generate_umath_templated_sources(ext, build_dir):
-        from numpy.distutils.misc_util import get_cmd
-
-        subpath = join('src', 'umath')
-        sources = [join(local_dir, subpath, 'loops.c.src'),
-                   join(local_dir, subpath, 'umathmodule.c.src')]
-
-        # numpy.distutils generate .c from .c.src in weird directories, we have
-        # to add them there as they depend on the build_dir
-        config.add_include_dirs(join(build_dir, subpath))
-
-        cmd = get_cmd('build_src')
-        cmd.ensure_finalized()
-
-        cmd.template_sources(sources, ext)
-
-
-    def generate_umath_c(ext,build_dir):
-        target = join(build_dir,header_dir,'__umath_generated.c')
-        dir = os.path.dirname(target)
-        if not os.path.exists(dir):
-            os.makedirs(dir)
-        script = generate_umath_py
-        if newer(script,target):
-            f = open(target,'w')
-            f.write(generate_umath.make_code(generate_umath.defdict,
-                                             generate_umath.__file__))
-            f.close()
-        return []
-
-    config.add_data_files('include/numpy/*.h')
-    config.add_include_dirs(join('src', 'npymath'))
-    config.add_include_dirs(join('src', 'multiarray'))
-    config.add_include_dirs(join('src', 'umath'))
-
-    config.numpy_include_dirs.extend(config.paths('include'))
-
-    deps = [join('src','npymath','_signbit.c'),
-            join('include','numpy','*object.h'),
-            'include/numpy/fenv/fenv.c',
-            'include/numpy/fenv/fenv.h',
-            join(codegen_dir,'genapi.py'),
-            ]
-
-    # Don't install fenv unless we need them.
-    if sys.platform == 'cygwin':
-        config.add_data_dir('include/numpy/fenv')
-
-    config.add_extension('_sort',
-                         sources=[join('src','_sortmodule.c.src'),
-                                  generate_config_h,
-                                  generate_numpyconfig_h,
-                                  generate_numpy_api,
-                                  ],
-                         )
-
-    # npymath needs the config.h and numpyconfig.h files to be generated, but
-    # build_clib cannot handle generate_config_h and generate_numpyconfig_h
-    # (don't ask). Because clib are generated before extensions, we have to
-    # explicitly add an extension which has generate_config_h and
-    # generate_numpyconfig_h as sources *before* adding npymath.
-
-    subst_dict = dict([("sep", os.path.sep), ("pkgname", "numpy.core")])
-    def get_mathlib_info(*args):
-        # Another ugly hack: the mathlib info is known once build_src is run,
-        # but we cannot use add_installed_pkg_config here either, so we only
-        # updated the substition dictionary during npymath build
-        config_cmd = config.get_config_cmd()
-
-        # Check that the toolchain works, to fail early if it doesn't
-        # (avoid late errors with MATHLIB which are confusing if the
-        # compiler does not work).
-        st = config_cmd.try_link('int main(void) { return 0;}')
-        if not st:
-            raise RuntimeError("Broken toolchain: cannot link a simple C program")
-        mlibs = check_mathlib(config_cmd)
-
-        posix_mlib = ' '.join(['-l%s' % l for l in mlibs])
-        msvc_mlib = ' '.join(['%s.lib' % l for l in mlibs])
-        subst_dict["posix_mathlib"] = posix_mlib
-        subst_dict["msvc_mathlib"] = msvc_mlib
-
-    config.add_installed_library('npymath',
-            sources=[join('src', 'npymath', 'npy_math.c.src'),
-                     join('src', 'npymath', 'ieee754.c.src'),
-                     join('src', 'npymath', 'npy_math_complex.c.src'),
-                     get_mathlib_info],
-            install_dir='lib')
-    config.add_npy_pkg_config("npymath.ini.in", "lib/npy-pkg-config",
-            subst_dict)
-    config.add_npy_pkg_config("mlib.ini.in", "lib/npy-pkg-config",
-            subst_dict)
-   
-    multiarray_deps = [
-            join('src', 'multiarray', 'arrayobject.h'),
-            join('src', 'multiarray', 'arraytypes.h'),
-            join('src', 'multiarray', 'buffer.h'),
-            join('src', 'multiarray', 'calculation.h'),
-            join('src', 'multiarray', 'common.h'),
-            join('src', 'multiarray', 'convert_datatype.h'),
-            join('src', 'multiarray', 'convert.h'),
-            join('src', 'multiarray', 'conversion_utils.h'),
-            join('src', 'multiarray', 'ctors.h'),
-            join('src', 'multiarray', 'descriptor.h'),
-            join('src', 'multiarray', 'getset.h'),
-            join('src', 'multiarray', 'hashdescr.h'),
-            join('src', 'multiarray', 'iterators.h'),
-            join('src', 'multiarray', 'mapping.h'),
-            join('src', 'multiarray', 'methods.h'),
-            join('src', 'multiarray', 'multiarraymodule.h'),
-            join('src', 'multiarray', 'numpymemoryview.h'),
-            join('src', 'multiarray', 'number.h'),
-            join('src', 'multiarray', 'numpyos.h'),
-            join('src', 'multiarray', 'refcount.h'),
-            join('src', 'multiarray', 'scalartypes.h'),
-            join('src', 'multiarray', 'sequence.h'),
-            join('src', 'multiarray', 'shape.h'),
-            join('src', 'multiarray', 'ucsnarrow.h'),
-            join('src', 'multiarray', 'usertypes.h')]
-
-    multiarray_src = [join('src', 'multiarray', 'multiarraymodule.c'),
-        join('src', 'multiarray', 'hashdescr.c'),
-        join('src', 'multiarray', 'arrayobject.c'),
-        join('src', 'multiarray', 'numpymemoryview.c'),
-        join('src', 'multiarray', 'buffer.c'),
-        join('src', 'multiarray', 'numpyos.c'),
-        join('src', 'multiarray', 'conversion_utils.c'),
-        join('src', 'multiarray', 'flagsobject.c'),
-        join('src', 'multiarray', 'descriptor.c'),
-        join('src', 'multiarray', 'iterators.c'),
-        join('src', 'multiarray', 'mapping.c'),
-        join('src', 'multiarray', 'number.c'),
-        join('src', 'multiarray', 'getset.c'),
-        join('src', 'multiarray', 'sequence.c'),
-        join('src', 'multiarray', 'methods.c'),
-        join('src', 'multiarray', 'ctors.c'),
-        join('src', 'multiarray', 'convert_datatype.c'),
-        join('src', 'multiarray', 'convert.c'),
-        join('src', 'multiarray', 'shape.c'),
-        join('src', 'multiarray', 'item_selection.c'),
-        join('src', 'multiarray', 'calculation.c'),
-        join('src', 'multiarray', 'common.c'),
-        join('src', 'multiarray', 'usertypes.c'),
-        join('src', 'multiarray', 'scalarapi.c'),
-        join('src', 'multiarray', 'refcount.c'),
-        join('src', 'multiarray', 'arraytypes.c.src'),
-        join('src', 'multiarray', 'scalartypes.c.src')]
-
-    if PYTHON_HAS_UNICODE_WIDE:
-        multiarray_src.append(join('src', 'multiarray', 'ucsnarrow.c'))
-
-    umath_src = [join('src', 'umath', 'umathmodule.c.src'),
-            join('src', 'umath', 'funcs.inc.src'),
-            join('src', 'umath', 'loops.c.src'),
-            join('src', 'umath', 'ufunc_object.c')]
-
-    umath_deps = [generate_umath_py,
-            join(codegen_dir,'generate_ufunc_api.py')]
-
-    if not ENABLE_SEPARATE_COMPILATION:
-        multiarray_deps.extend(multiarray_src)
-        multiarray_src = [join('src', 'multiarray', 'multiarraymodule_onefile.c')]
-        multiarray_src.append(generate_multiarray_templated_sources)
- 
-        umath_deps.extend(umath_src)
-        umath_src = [join('src', 'umath', 'umathmodule_onefile.c')]
-        umath_src.append(generate_umath_templated_sources)
-        umath_src.append(join('src', 'umath', 'funcs.inc.src'))
-
-    config.add_extension('multiarray',
-                         sources = multiarray_src +
-                                [generate_config_h,
-                                 generate_numpyconfig_h,
-                                 generate_numpy_api,
-                                 join(codegen_dir,'generate_numpy_api.py'),
-                                 join('*.py')],
-                         depends = deps + multiarray_deps,
-                         libraries=['npymath'])
-
-    config.add_extension('umath',
-                         sources = [generate_config_h,
-                                    generate_numpyconfig_h,
-                                    generate_umath_c,
-                                    generate_ufunc_api,
-                                    ] + umath_src,
-                         depends = deps + umath_deps,
-                         libraries=['npymath'],
-                         )
-
-    config.add_extension('scalarmath',
-                         sources=[join('src','scalarmathmodule.c.src'),
-                                  generate_config_h,
-                                  generate_numpyconfig_h,
-                                  generate_numpy_api,
-                                  generate_ufunc_api],
-                         )
-
-    # Configure blasdot
-    blas_info = get_info('blas_opt',0)
-    #blas_info = {}
-    def get_dotblas_sources(ext, build_dir):
-        if blas_info:
-            if ('NO_ATLAS_INFO',1) in blas_info.get('define_macros',[]):
-                return None # dotblas needs ATLAS, Fortran compiled blas will not be sufficient.
-            return ext.depends[:1]
-        return None # no extension module will be built
-
-    config.add_extension('_dotblas',
-                         sources = [get_dotblas_sources],
-                         depends=[join('blasdot','_dotblas.c'),
-                                  join('blasdot','cblas.h'),
-                                  ],
-                         include_dirs = ['blasdot'],
-                         extra_info = blas_info
-                         )
-
-    config.add_extension('umath_tests',
-                    sources = [join('src','umath', 'umath_tests.c.src')])
-
-    config.add_extension('multiarray_tests',
-                    sources = [join('src', 'multiarray', 'multiarray_tests.c.src')])
-
-    config.add_data_dir('tests')
-    config.add_data_dir('tests/data')
-
-    config.make_svn_version_py()
-
-    return config
-
-if __name__=='__main__':
-    from numpy.distutils.core import setup
-    setup(configuration=configuration)

=== removed directory '.pc/03_force_f2py_version.patch'
=== removed directory '.pc/03_force_f2py_version.patch/numpy'
=== removed directory '.pc/03_force_f2py_version.patch/numpy/f2py'
=== removed file '.pc/03_force_f2py_version.patch/numpy/f2py/setup.py'
--- .pc/03_force_f2py_version.patch/numpy/f2py/setup.py	2010-12-24 00:14:25 +0000
+++ .pc/03_force_f2py_version.patch/numpy/f2py/setup.py	1970-01-01 00:00:00 +0000
@@ -1,127 +0,0 @@
-#!/usr/bin/env python
-"""
-setup.py for installing F2PY
-
-Usage:
-   python setup.py install
-
-Copyright 2001-2005 Pearu Peterson all rights reserved,
-Pearu Peterson <[e-mail]>
-Permission to use, modify, and distribute this software is given under the
-terms of the NumPy License.
-
-NO WARRANTY IS EXPRESSED OR IMPLIED.  USE AT YOUR OWN RISK.
-$Revision: 1.32 $
-$Date: 2005/01/30 17:22:14 $
-Pearu Peterson
-"""
-
-__version__ = "$Id: setup.py,v 1.32 2005/01/30 17:22:14 pearu Exp $"
-
-import os
-import sys
-from distutils.dep_util import newer
-from numpy.distutils import log
-from numpy.distutils.core import setup
-from numpy.distutils.misc_util import Configuration
-
-from __version__ import version
-
-def configuration(parent_package='',top_path=None):
-    config = Configuration('f2py', parent_package, top_path)
-
-    config.add_data_dir('docs')
-    config.add_data_dir('tests')
-
-    config.add_data_files('src/fortranobject.c',
-                          'src/fortranobject.h',
-                          'f2py.1'
-                          )
-
-    config.make_svn_version_py()
-
-    def generate_f2py_py(build_dir):
-        f2py_exe = 'f2py'+os.path.basename(sys.executable)[6:]
-        if f2py_exe[-4:]=='.exe':
-            f2py_exe = f2py_exe[:-4] + '.py'
-        if 'bdist_wininst' in sys.argv and f2py_exe[-3:] != '.py':
-            f2py_exe = f2py_exe + '.py'
-        target = os.path.join(build_dir,f2py_exe)
-        if newer(__file__,target):
-            log.info('Creating %s', target)
-            f = open(target,'w')
-            f.write('''\
-#!/usr/bin/env %s
-# See http://cens.ioc.ee/projects/f2py2e/
-import os, sys
-for mode in ["g3-numpy", "2e-numeric", "2e-numarray", "2e-numpy"]:
-    try:
-        i=sys.argv.index("--"+mode)
-        del sys.argv[i]
-        break
-    except ValueError: pass
-os.environ["NO_SCIPY_IMPORT"]="f2py"
-if mode=="g3-numpy":
-    sys.stderr.write("G3 f2py support is not implemented, yet.\\n")
-    sys.exit(1)
-elif mode=="2e-numeric":
-    from f2py2e import main
-elif mode=="2e-numarray":
-    sys.argv.append("-DNUMARRAY")
-    from f2py2e import main
-elif mode=="2e-numpy":
-    from numpy.f2py import main
-else:
-    sys.stderr.write("Unknown mode: " + repr(mode) + "\\n")
-    sys.exit(1)
-main()
-'''%(os.path.basename(sys.executable)))
-            f.close()
-        return target
-
-    config.add_scripts(generate_f2py_py)
-
-    log.info('F2PY Version %s', config.get_version())
-
-    return config
-
-if __name__ == "__main__":
-
-    config = configuration(top_path='')
-    version = config.get_version()
-    print('F2PY Version',version)
-    config = config.todict()
-
-    if sys.version[:3]>='2.3':
-        config['download_url'] = "http://cens.ioc.ee/projects/f2py2e/2.x"\
-                                 "/F2PY-2-latest.tar.gz"
-        config['classifiers'] = [
-            'Development Status :: 5 - Production/Stable',
-            'Intended Audience :: Developers',
-            'Intended Audience :: Science/Research',
-            'License :: OSI Approved :: NumPy License',
-            'Natural Language :: English',
-            'Operating System :: OS Independent',
-            'Programming Language :: C',
-            'Programming Language :: Fortran',
-            'Programming Language :: Python',
-            'Topic :: Scientific/Engineering',
-            'Topic :: Software Development :: Code Generators',
-            ]
-    setup(version=version,
-          description       = "F2PY - Fortran to Python Interface Generaton",
-          author            = "Pearu Peterson",
-          author_email      = "[e-mail]",
-          maintainer        = "Pearu Peterson",
-          maintainer_email  = "[e-mail]",
-          license           = "BSD",
-          platforms         = "Unix, Windows (mingw|cygwin), Mac OSX",
-          long_description  = """\
-The Fortran to Python Interface Generator, or F2PY for short, is a
-command line tool (f2py) for generating Python C/API modules for
-wrapping Fortran 77/90/95 subroutines, accessing common blocks from
-Python, and calling Python functions from Fortran (call-backs).
-Interfacing subroutines/data from Fortran 90/95 modules is supported.""",
-          url               = "http://cens.ioc.ee/projects/f2py2e/",
-          keywords          = ['Fortran','f2py'],
-          **config)

=== removed directory '.pc/10_use_local_python.org_object.inv_sphinx.diff'
=== removed directory '.pc/10_use_local_python.org_object.inv_sphinx.diff/doc'
=== removed directory '.pc/10_use_local_python.org_object.inv_sphinx.diff/doc/source'
=== removed file '.pc/10_use_local_python.org_object.inv_sphinx.diff/doc/source/conf.py'
--- .pc/10_use_local_python.org_object.inv_sphinx.diff/doc/source/conf.py	2010-12-24 00:14:25 +0000
+++ .pc/10_use_local_python.org_object.inv_sphinx.diff/doc/source/conf.py	1970-01-01 00:00:00 +0000
@@ -1,269 +0,0 @@
-# -*- coding: utf-8 -*-
-
-import sys, os, re
-
-# Check Sphinx version
-import sphinx
-if sphinx.__version__ < "1.0.1":
-    raise RuntimeError("Sphinx 1.0.1 or newer required")
-
-needs_sphinx = '1.0'
-
-# -----------------------------------------------------------------------------
-# General configuration
-# -----------------------------------------------------------------------------
-
-# Add any Sphinx extension module names here, as strings. They can be extensions
-# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
-
-sys.path.insert(0, os.path.abspath('../sphinxext'))
-
-extensions = ['sphinx.ext.autodoc', 'sphinx.ext.pngmath', 'numpydoc',
-              'sphinx.ext.intersphinx', 'sphinx.ext.coverage',
-              'sphinx.ext.doctest', 'sphinx.ext.autosummary',
-              'plot_directive']
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The suffix of source filenames.
-source_suffix = '.rst'
-
-# The master toctree document.
-#master_doc = 'index'
-
-# General substitutions.
-project = 'NumPy'
-copyright = '2008-2009, The Scipy community'
-
-# The default replacements for |version| and |release|, also used in various
-# other places throughout the built documents.
-#
-import numpy
-# The short X.Y version (including .devXXXX, rcX, b1 suffixes if present)
-version = re.sub(r'(\d+\.\d+)\.\d+(.*)', r'\1\2', numpy.__version__)
-version = re.sub(r'(\.dev\d+).*?$', r'\1', version)
-# The full version, including alpha/beta/rc tags.
-release = numpy.__version__
-print version, release
-
-# There are two options for replacing |today|: either, you set today to some
-# non-false value, then it is used:
-#today = ''
-# Else, today_fmt is used as the format for a strftime call.
-today_fmt = '%B %d, %Y'
-
-# List of documents that shouldn't be included in the build.
-#unused_docs = []
-
-# The reST default role (used for this markup: `text`) to use for all documents.
-default_role = "autolink"
-
-# List of directories, relative to source directories, that shouldn't be searched
-# for source files.
-exclude_dirs = []
-
-# If true, '()' will be appended to :func: etc. cross-reference text.
-add_function_parentheses = False
-
-# If true, the current module name will be prepended to all description
-# unit titles (such as .. function::).
-#add_module_names = True
-
-# If true, sectionauthor and moduleauthor directives will be shown in the
-# output. They are ignored by default.
-#show_authors = False
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
-
-
-# -----------------------------------------------------------------------------
-# HTML output
-# -----------------------------------------------------------------------------
-
-# The style sheet to use for HTML and HTML Help pages. A file of that name
-# must exist either in Sphinx' static/ path, or in one of the custom paths
-# given in html_static_path.
-html_style = 'scipy.css'
-
-# The name for this set of Sphinx documents.  If None, it defaults to
-# "<project> v<release> documentation".
-html_title = "%s v%s Manual (DRAFT)" % (project, version)
-
-# The name of an image file (within the static path) to place at the top of
-# the sidebar.
-html_logo = 'scipyshiny_small.png'
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
-
-# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
-# using the given strftime format.
-html_last_updated_fmt = '%b %d, %Y'
-
-# If true, SmartyPants will be used to convert quotes and dashes to
-# typographically correct entities.
-#html_use_smartypants = True
-
-# Custom sidebar templates, maps document names to template names.
-html_sidebars = {
-    'index': 'indexsidebar.html'
-}
-
-# Additional templates that should be rendered to pages, maps page names to
-# template names.
-html_additional_pages = {
-    'index': 'indexcontent.html',
-}
-
-# If false, no module index is generated.
-html_use_modindex = True
-
-# If true, the reST sources are included in the HTML build as _sources/<name>.
-#html_copy_source = True
-
-# If true, an OpenSearch description file will be output, and all pages will
-# contain a <link> tag referring to it.  The value of this option must be the
-# base URL from which the finished HTML is served.
-#html_use_opensearch = ''
-
-# If nonempty, this is the file name suffix for HTML files (e.g. ".html").
-#html_file_suffix = '.html'
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = 'numpy'
-
-# Pngmath should try to align formulas properly
-pngmath_use_preview = True
-
-
-# -----------------------------------------------------------------------------
-# LaTeX output
-# -----------------------------------------------------------------------------
-
-# The paper size ('letter' or 'a4').
-#latex_paper_size = 'letter'
-
-# The font size ('10pt', '11pt' or '12pt').
-#latex_font_size = '10pt'
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title, author, document class [howto/manual]).
-_stdauthor = 'Written by the NumPy community'
-latex_documents = [
-  ('reference/index', 'numpy-ref.tex', 'NumPy Reference',
-   _stdauthor, 'manual'),
-  ('user/index', 'numpy-user.tex', 'NumPy User Guide',
-   _stdauthor, 'manual'),
-]
-
-# The name of an image file (relative to this directory) to place at the top of
-# the title page.
-#latex_logo = None
-
-# For "manual" documents, if this is true, then toplevel headings are parts,
-# not chapters.
-#latex_use_parts = False
-
-# Additional stuff for the LaTeX preamble.
-latex_preamble = r'''
-\usepackage{amsmath}
-\DeclareUnicodeCharacter{00A0}{\nobreakspace}
-
-% In the parameters section, place a newline after the Parameters
-% header
-\usepackage{expdlist}
-\let\latexdescription=\description
-\def\description{\latexdescription{}{} \breaklabel}
-
-% Make Examples/etc section headers smaller and more compact
-\makeatletter
-\titleformat{\paragraph}{\normalsize\py@HeaderFamily}%
-            {\py@TitleColor}{0em}{\py@TitleColor}{\py@NormalColor}
-\titlespacing*{\paragraph}{0pt}{1ex}{0pt}
-\makeatother
-
-% Fix footer/header
-\renewcommand{\chaptermark}[1]{\markboth{\MakeUppercase{\thechapter.\ #1}}{}}
-\renewcommand{\sectionmark}[1]{\markright{\MakeUppercase{\thesection.\ #1}}}
-'''
-
-# Documents to append as an appendix to all manuals.
-#latex_appendices = []
-
-# If false, no module index is generated.
-latex_use_modindex = False
-
-
-# -----------------------------------------------------------------------------
-# Intersphinx configuration
-# -----------------------------------------------------------------------------
-intersphinx_mapping = {'http://docs.python.org/dev': None}
-
-
-# -----------------------------------------------------------------------------
-# Numpy extensions
-# -----------------------------------------------------------------------------
-
-# If we want to do a phantom import from an XML file for all autodocs
-phantom_import_file = 'dump.xml'
-
-# Make numpydoc to generate plots for example sections
-numpydoc_use_plots = True
-
-# -----------------------------------------------------------------------------
-# Autosummary
-# -----------------------------------------------------------------------------
-
-import glob
-autosummary_generate = glob.glob("reference/*.rst")
-
-# -----------------------------------------------------------------------------
-# Coverage checker
-# -----------------------------------------------------------------------------
-coverage_ignore_modules = r"""
-    """.split()
-coverage_ignore_functions = r"""
-    test($|_) (some|all)true bitwise_not cumproduct pkgload
-    generic\.
-    """.split()
-coverage_ignore_classes = r"""
-    """.split()
-
-coverage_c_path = []
-coverage_c_regexes = {}
-coverage_ignore_c_items = {}
-
-
-# -----------------------------------------------------------------------------
-# Plots
-# -----------------------------------------------------------------------------
-plot_pre_code = """
-import numpy as np
-np.random.seed(0)
-"""
-plot_include_source = True
-plot_formats = [('png', 100), 'pdf']
-
-import math
-phi = (math.sqrt(5) + 1)/2
-
-import matplotlib
-matplotlib.rcParams.update({
-    'font.size': 8,
-    'axes.titlesize': 8,
-    'axes.labelsize': 8,
-    'xtick.labelsize': 8,
-    'ytick.labelsize': 8,
-    'legend.fontsize': 8,
-    'figure.figsize': (3*phi, 3),
-    'figure.subplot.bottom': 0.2,
-    'figure.subplot.left': 0.2,
-    'figure.subplot.right': 0.9,
-    'figure.subplot.top': 0.85,
-    'figure.subplot.wspace': 0.4,
-    'text.usetex': False,
-})

=== removed directory '.pc/20_disable-plot-extension.patch'
=== removed directory '.pc/20_disable-plot-extension.patch/doc'
=== removed directory '.pc/20_disable-plot-extension.patch/doc/source'
=== removed file '.pc/20_disable-plot-extension.patch/doc/source/conf.py'
--- .pc/20_disable-plot-extension.patch/doc/source/conf.py	2011-02-11 12:00:03 +0000
+++ .pc/20_disable-plot-extension.patch/doc/source/conf.py	1970-01-01 00:00:00 +0000
@@ -1,269 +0,0 @@
-# -*- coding: utf-8 -*-
-
-import sys, os, re
-
-# Check Sphinx version
-import sphinx
-if sphinx.__version__ < "1.0.1":
-    raise RuntimeError("Sphinx 1.0.1 or newer required")
-
-needs_sphinx = '1.0'
-
-# -----------------------------------------------------------------------------
-# General configuration
-# -----------------------------------------------------------------------------
-
-# Add any Sphinx extension module names here, as strings. They can be extensions
-# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
-
-sys.path.insert(0, os.path.abspath('../sphinxext'))
-
-extensions = ['sphinx.ext.autodoc', 'sphinx.ext.pngmath', 'numpydoc',
-              'sphinx.ext.intersphinx', 'sphinx.ext.coverage',
-              'sphinx.ext.doctest', 'sphinx.ext.autosummary',
-              'plot_directive']
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The suffix of source filenames.
-source_suffix = '.rst'
-
-# The master toctree document.
-#master_doc = 'index'
-
-# General substitutions.
-project = 'NumPy'
-copyright = '2008-2009, The Scipy community'
-
-# The default replacements for |version| and |release|, also used in various
-# other places throughout the built documents.
-#
-import numpy
-# The short X.Y version (including .devXXXX, rcX, b1 suffixes if present)
-version = re.sub(r'(\d+\.\d+)\.\d+(.*)', r'\1\2', numpy.__version__)
-version = re.sub(r'(\.dev\d+).*?$', r'\1', version)
-# The full version, including alpha/beta/rc tags.
-release = numpy.__version__
-print version, release
-
-# There are two options for replacing |today|: either, you set today to some
-# non-false value, then it is used:
-#today = ''
-# Else, today_fmt is used as the format for a strftime call.
-today_fmt = '%B %d, %Y'
-
-# List of documents that shouldn't be included in the build.
-#unused_docs = []
-
-# The reST default role (used for this markup: `text`) to use for all documents.
-default_role = "autolink"
-
-# List of directories, relative to source directories, that shouldn't be searched
-# for source files.
-exclude_dirs = []
-
-# If true, '()' will be appended to :func: etc. cross-reference text.
-add_function_parentheses = False
-
-# If true, the current module name will be prepended to all description
-# unit titles (such as .. function::).
-#add_module_names = True
-
-# If true, sectionauthor and moduleauthor directives will be shown in the
-# output. They are ignored by default.
-#show_authors = False
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
-
-
-# -----------------------------------------------------------------------------
-# HTML output
-# -----------------------------------------------------------------------------
-
-# The style sheet to use for HTML and HTML Help pages. A file of that name
-# must exist either in Sphinx' static/ path, or in one of the custom paths
-# given in html_static_path.
-html_style = 'scipy.css'
-
-# The name for this set of Sphinx documents.  If None, it defaults to
-# "<project> v<release> documentation".
-html_title = "%s v%s Manual (DRAFT)" % (project, version)
-
-# The name of an image file (within the static path) to place at the top of
-# the sidebar.
-html_logo = 'scipyshiny_small.png'
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
-
-# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
-# using the given strftime format.
-html_last_updated_fmt = '%b %d, %Y'
-
-# If true, SmartyPants will be used to convert quotes and dashes to
-# typographically correct entities.
-#html_use_smartypants = True
-
-# Custom sidebar templates, maps document names to template names.
-html_sidebars = {
-    'index': 'indexsidebar.html'
-}
-
-# Additional templates that should be rendered to pages, maps page names to
-# template names.
-html_additional_pages = {
-    'index': 'indexcontent.html',
-}
-
-# If false, no module index is generated.
-html_use_modindex = True
-
-# If true, the reST sources are included in the HTML build as _sources/<name>.
-#html_copy_source = True
-
-# If true, an OpenSearch description file will be output, and all pages will
-# contain a <link> tag referring to it.  The value of this option must be the
-# base URL from which the finished HTML is served.
-#html_use_opensearch = ''
-
-# If nonempty, this is the file name suffix for HTML files (e.g. ".html").
-#html_file_suffix = '.html'
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = 'numpy'
-
-# Pngmath should try to align formulas properly
-pngmath_use_preview = True
-
-
-# -----------------------------------------------------------------------------
-# LaTeX output
-# -----------------------------------------------------------------------------
-
-# The paper size ('letter' or 'a4').
-#latex_paper_size = 'letter'
-
-# The font size ('10pt', '11pt' or '12pt').
-#latex_font_size = '10pt'
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title, author, document class [howto/manual]).
-_stdauthor = 'Written by the NumPy community'
-latex_documents = [
-  ('reference/index', 'numpy-ref.tex', 'NumPy Reference',
-   _stdauthor, 'manual'),
-  ('user/index', 'numpy-user.tex', 'NumPy User Guide',
-   _stdauthor, 'manual'),
-]
-
-# The name of an image file (relative to this directory) to place at the top of
-# the title page.
-#latex_logo = None
-
-# For "manual" documents, if this is true, then toplevel headings are parts,
-# not chapters.
-#latex_use_parts = False
-
-# Additional stuff for the LaTeX preamble.
-latex_preamble = r'''
-\usepackage{amsmath}
-\DeclareUnicodeCharacter{00A0}{\nobreakspace}
-
-% In the parameters section, place a newline after the Parameters
-% header
-\usepackage{expdlist}
-\let\latexdescription=\description
-\def\description{\latexdescription{}{} \breaklabel}
-
-% Make Examples/etc section headers smaller and more compact
-\makeatletter
-\titleformat{\paragraph}{\normalsize\py@HeaderFamily}%
-            {\py@TitleColor}{0em}{\py@TitleColor}{\py@NormalColor}
-\titlespacing*{\paragraph}{0pt}{1ex}{0pt}
-\makeatother
-
-% Fix footer/header
-\renewcommand{\chaptermark}[1]{\markboth{\MakeUppercase{\thechapter.\ #1}}{}}
-\renewcommand{\sectionmark}[1]{\markright{\MakeUppercase{\thesection.\ #1}}}
-'''
-
-# Documents to append as an appendix to all manuals.
-#latex_appendices = []
-
-# If false, no module index is generated.
-latex_use_modindex = False
-
-
-# -----------------------------------------------------------------------------
-# Intersphinx configuration
-# -----------------------------------------------------------------------------
-intersphinx_mapping = {'http://docs.python.org/dev': '../../debian/python.org_objects.inv'}
-
-
-# -----------------------------------------------------------------------------
-# Numpy extensions
-# -----------------------------------------------------------------------------
-
-# If we want to do a phantom import from an XML file for all autodocs
-phantom_import_file = 'dump.xml'
-
-# Make numpydoc to generate plots for example sections
-numpydoc_use_plots = True
-
-# -----------------------------------------------------------------------------
-# Autosummary
-# -----------------------------------------------------------------------------
-
-import glob
-autosummary_generate = glob.glob("reference/*.rst")
-
-# -----------------------------------------------------------------------------
-# Coverage checker
-# -----------------------------------------------------------------------------
-coverage_ignore_modules = r"""
-    """.split()
-coverage_ignore_functions = r"""
-    test($|_) (some|all)true bitwise_not cumproduct pkgload
-    generic\.
-    """.split()
-coverage_ignore_classes = r"""
-    """.split()
-
-coverage_c_path = []
-coverage_c_regexes = {}
-coverage_ignore_c_items = {}
-
-
-# -----------------------------------------------------------------------------
-# Plots
-# -----------------------------------------------------------------------------
-plot_pre_code = """
-import numpy as np
-np.random.seed(0)
-"""
-plot_include_source = True
-plot_formats = [('png', 100), 'pdf']
-
-import math
-phi = (math.sqrt(5) + 1)/2
-
-import matplotlib
-matplotlib.rcParams.update({
-    'font.size': 8,
-    'axes.titlesize': 8,
-    'axes.labelsize': 8,
-    'xtick.labelsize': 8,
-    'ytick.labelsize': 8,
-    'legend.fontsize': 8,
-    'figure.figsize': (3*phi, 3),
-    'figure.subplot.bottom': 0.2,
-    'figure.subplot.left': 0.2,
-    'figure.subplot.right': 0.9,
-    'figure.subplot.top': 0.85,
-    'figure.subplot.wspace': 0.4,
-    'text.usetex': False,
-})

=== removed directory '.pc/20_disable-plot-extension.patch/doc/sphinxext'
=== removed directory '.pc/20_disable-plot-extension.patch/doc/sphinxext/tests'
=== removed file '.pc/20_disable-plot-extension.patch/doc/sphinxext/tests/test_docscrape.py'
--- .pc/20_disable-plot-extension.patch/doc/sphinxext/tests/test_docscrape.py	2011-02-11 12:00:03 +0000
+++ .pc/20_disable-plot-extension.patch/doc/sphinxext/tests/test_docscrape.py	1970-01-01 00:00:00 +0000
@@ -1,615 +0,0 @@
-# -*- encoding:utf-8 -*-
-
-import sys, os
-sys.path.append(os.path.join(os.path.dirname(__file__), '..'))
-
-from docscrape import NumpyDocString, FunctionDoc, ClassDoc
-from docscrape_sphinx import SphinxDocString, SphinxClassDoc
-from nose.tools import *
-
-doc_txt = '''\
-  numpy.multivariate_normal(mean, cov, shape=None, spam=None)
-
-  Draw values from a multivariate normal distribution with specified
-  mean and covariance.
-
-  The multivariate normal or Gaussian distribution is a generalisation
-  of the one-dimensional normal distribution to higher dimensions.
-
-  Parameters
-  ----------
-  mean : (N,) ndarray
-      Mean of the N-dimensional distribution.
-
-      .. math::
-
-         (1+2+3)/3
-
-  cov : (N,N) ndarray
-      Covariance matrix of the distribution.
-  shape : tuple of ints
-      Given a shape of, for example, (m,n,k), m*n*k samples are
-      generated, and packed in an m-by-n-by-k arrangement.  Because
-      each sample is N-dimensional, the output shape is (m,n,k,N).
-
-  Returns
-  -------
-  out : ndarray
-      The drawn samples, arranged according to `shape`.  If the
-      shape given is (m,n,...), then the shape of `out` is is
-      (m,n,...,N).
-
-      In other words, each entry ``out[i,j,...,:]`` is an N-dimensional
-      value drawn from the distribution.
-
-  Other Parameters
-  ----------------
-  spam : parrot
-      A parrot off its mortal coil.
-
-  Raises
-  ------
-  RuntimeError
-      Some error
-
-  Warns
-  -----
-  RuntimeWarning
-      Some warning
-
-  Warnings
-  --------
-  Certain warnings apply.
-
-  Notes
-  -----
-
-  Instead of specifying the full covariance matrix, popular
-  approximations include:
-
-    - Spherical covariance (`cov` is a multiple of the identity matrix)
-    - Diagonal covariance (`cov` has non-negative elements only on the diagonal)
-
-  This geometrical property can be seen in two dimensions by plotting
-  generated data-points:
-
-  >>> mean = [0,0]
-  >>> cov = [[1,0],[0,100]] # diagonal covariance, points lie on x or y-axis
-
-  >>> x,y = multivariate_normal(mean,cov,5000).T
-  >>> plt.plot(x,y,'x'); plt.axis('equal'); plt.show()
-
-  Note that the covariance matrix must be symmetric and non-negative
-  definite.
-
-  References
-  ----------
-  .. [1] A. Papoulis, "Probability, Random Variables, and Stochastic
-         Processes," 3rd ed., McGraw-Hill Companies, 1991
-  .. [2] R.O. Duda, P.E. Hart, and D.G. Stork, "Pattern Classification,"
-         2nd ed., Wiley, 2001.
-
-  See Also
-  --------
-  some, other, funcs
-  otherfunc : relationship
-
-  Examples
-  --------
-  >>> mean = (1,2)
-  >>> cov = [[1,0],[1,0]]
-  >>> x = multivariate_normal(mean,cov,(3,3))
-  >>> print x.shape
-  (3, 3, 2)
-
-  The following is probably true, given that 0.6 is roughly twice the
-  standard deviation:
-
-  >>> print list( (x[0,0,:] - mean) < 0.6 )
-  [True, True]
-
-  .. index:: random
-     :refguide: random;distributions, random;gauss
-
-  '''
-doc = NumpyDocString(doc_txt)
-
-
-def test_signature():
-    assert doc['Signature'].startswith('numpy.multivariate_normal(')
-    assert doc['Signature'].endswith('spam=None)')
-
-def test_summary():
-    assert doc['Summary'][0].startswith('Draw values')
-    assert doc['Summary'][-1].endswith('covariance.')
-
-def test_extended_summary():
-    assert doc['Extended Summary'][0].startswith('The multivariate normal')
-
-def test_parameters():
-    assert_equal(len(doc['Parameters']), 3)
-    assert_equal([n for n,_,_ in doc['Parameters']], ['mean','cov','shape'])
-
-    arg, arg_type, desc = doc['Parameters'][1]
-    assert_equal(arg_type, '(N,N) ndarray')
-    assert desc[0].startswith('Covariance matrix')
-    assert doc['Parameters'][0][-1][-2] == '   (1+2+3)/3'
-
-def test_other_parameters():
-    assert_equal(len(doc['Other Parameters']), 1)
-    assert_equal([n for n,_,_ in doc['Other Parameters']], ['spam'])
-    arg, arg_type, desc = doc['Other Parameters'][0]
-    assert_equal(arg_type, 'parrot')
-    assert desc[0].startswith('A parrot off its mortal coil')
-
-def test_returns():
-    assert_equal(len(doc['Returns']), 1)
-    arg, arg_type, desc = doc['Returns'][0]
-    assert_equal(arg, 'out')
-    assert_equal(arg_type, 'ndarray')
-    assert desc[0].startswith('The drawn samples')
-    assert desc[-1].endswith('distribution.')
-
-def test_notes():
-    assert doc['Notes'][0].startswith('Instead')
-    assert doc['Notes'][-1].endswith('definite.')
-    assert_equal(len(doc['Notes']), 17)
-
-def test_references():
-    assert doc['References'][0].startswith('..')
-    assert doc['References'][-1].endswith('2001.')
-
-def test_examples():
-    assert doc['Examples'][0].startswith('>>>')
-    assert doc['Examples'][-1].endswith('True]')
-
-def test_index():
-    assert_equal(doc['index']['default'], 'random')
-    print doc['index']
-    assert_equal(len(doc['index']), 2)
-    assert_equal(len(doc['index']['refguide']), 2)
-
-def non_blank_line_by_line_compare(a,b):
-    a = [l for l in a.split('\n') if l.strip()]
-    b = [l for l in b.split('\n') if l.strip()]
-    for n,line in enumerate(a):
-        if not line == b[n]:
-            raise AssertionError("Lines %s of a and b differ: "
-                                 "\n>>> %s\n<<< %s\n" %
-                                 (n,line,b[n]))
-def test_str():
-    non_blank_line_by_line_compare(str(doc),
-"""numpy.multivariate_normal(mean, cov, shape=None, spam=None)
-
-Draw values from a multivariate normal distribution with specified
-mean and covariance.
-
-The multivariate normal or Gaussian distribution is a generalisation
-of the one-dimensional normal distribution to higher dimensions.
-
-Parameters
-----------
-mean : (N,) ndarray
-    Mean of the N-dimensional distribution.
-
-    .. math::
-
-       (1+2+3)/3
-
-cov : (N,N) ndarray
-    Covariance matrix of the distribution.
-shape : tuple of ints
-    Given a shape of, for example, (m,n,k), m*n*k samples are
-    generated, and packed in an m-by-n-by-k arrangement.  Because
-    each sample is N-dimensional, the output shape is (m,n,k,N).
-
-Returns
--------
-out : ndarray
-    The drawn samples, arranged according to `shape`.  If the
-    shape given is (m,n,...), then the shape of `out` is is
-    (m,n,...,N).
-
-    In other words, each entry ``out[i,j,...,:]`` is an N-dimensional
-    value drawn from the distribution.
-
-Other Parameters
-----------------
-spam : parrot
-    A parrot off its mortal coil.
-
-Raises
-------
-RuntimeError : 
-    Some error
-
-Warns
------
-RuntimeWarning : 
-    Some warning
-
-Warnings
---------
-Certain warnings apply.
-
-See Also
---------
-`some`_, `other`_, `funcs`_
-
-`otherfunc`_
-    relationship
-
-Notes
------
-Instead of specifying the full covariance matrix, popular
-approximations include:
-
-  - Spherical covariance (`cov` is a multiple of the identity matrix)
-  - Diagonal covariance (`cov` has non-negative elements only on the diagonal)
-
-This geometrical property can be seen in two dimensions by plotting
-generated data-points:
-
->>> mean = [0,0]
->>> cov = [[1,0],[0,100]] # diagonal covariance, points lie on x or y-axis
-
->>> x,y = multivariate_normal(mean,cov,5000).T
->>> plt.plot(x,y,'x'); plt.axis('equal'); plt.show()
-
-Note that the covariance matrix must be symmetric and non-negative
-definite.
-
-References
-----------
-.. [1] A. Papoulis, "Probability, Random Variables, and Stochastic
-       Processes," 3rd ed., McGraw-Hill Companies, 1991
-.. [2] R.O. Duda, P.E. Hart, and D.G. Stork, "Pattern Classification,"
-       2nd ed., Wiley, 2001.
-
-Examples
---------
->>> mean = (1,2)
->>> cov = [[1,0],[1,0]]
->>> x = multivariate_normal(mean,cov,(3,3))
->>> print x.shape
-(3, 3, 2)
-
-The following is probably true, given that 0.6 is roughly twice the
-standard deviation:
-
->>> print list( (x[0,0,:] - mean) < 0.6 )
-[True, True]
-
-.. index:: random
-   :refguide: random;distributions, random;gauss""")
-
-
-def test_sphinx_str():
-    sphinx_doc = SphinxDocString(doc_txt)
-    non_blank_line_by_line_compare(str(sphinx_doc),
-"""
-.. index:: random
-   single: random;distributions, random;gauss
-
-Draw values from a multivariate normal distribution with specified
-mean and covariance.
-
-The multivariate normal or Gaussian distribution is a generalisation
-of the one-dimensional normal distribution to higher dimensions.
-
-:Parameters:
-
-    **mean** : (N,) ndarray
-
-        Mean of the N-dimensional distribution.
-
-        .. math::
-
-           (1+2+3)/3
-
-    **cov** : (N,N) ndarray
-
-        Covariance matrix of the distribution.
-
-    **shape** : tuple of ints
-
-        Given a shape of, for example, (m,n,k), m*n*k samples are
-        generated, and packed in an m-by-n-by-k arrangement.  Because
-        each sample is N-dimensional, the output shape is (m,n,k,N).
-
-:Returns:
-
-    **out** : ndarray
-
-        The drawn samples, arranged according to `shape`.  If the
-        shape given is (m,n,...), then the shape of `out` is is
-        (m,n,...,N).
-        
-        In other words, each entry ``out[i,j,...,:]`` is an N-dimensional
-        value drawn from the distribution.
-
-:Other Parameters:
-
-    **spam** : parrot
-
-        A parrot off its mortal coil.
- 
-:Raises:
-
-    **RuntimeError** : 
-
-        Some error
-
-:Warns:
-
-    **RuntimeWarning** : 
-
-        Some warning
-
-.. warning::
-
-    Certain warnings apply.
-
-.. seealso::
-    
-    :obj:`some`, :obj:`other`, :obj:`funcs`
-    
-    :obj:`otherfunc`
-        relationship
-    
-.. rubric:: Notes
-
-Instead of specifying the full covariance matrix, popular
-approximations include:
-
-  - Spherical covariance (`cov` is a multiple of the identity matrix)
-  - Diagonal covariance (`cov` has non-negative elements only on the diagonal)
-
-This geometrical property can be seen in two dimensions by plotting
-generated data-points:
-
->>> mean = [0,0]
->>> cov = [[1,0],[0,100]] # diagonal covariance, points lie on x or y-axis
-
->>> x,y = multivariate_normal(mean,cov,5000).T
->>> plt.plot(x,y,'x'); plt.axis('equal'); plt.show()
-
-Note that the covariance matrix must be symmetric and non-negative
-definite.
-
-.. rubric:: References
-
-.. [1] A. Papoulis, "Probability, Random Variables, and Stochastic
-       Processes," 3rd ed., McGraw-Hill Companies, 1991
-.. [2] R.O. Duda, P.E. Hart, and D.G. Stork, "Pattern Classification,"
-       2nd ed., Wiley, 2001.
-
-.. only:: latex
-
-   [1]_, [2]_
-
-.. rubric:: Examples
-
->>> mean = (1,2)
->>> cov = [[1,0],[1,0]]
->>> x = multivariate_normal(mean,cov,(3,3))
->>> print x.shape
-(3, 3, 2)
-
-The following is probably true, given that 0.6 is roughly twice the
-standard deviation:
-
->>> print list( (x[0,0,:] - mean) < 0.6 )
-[True, True]
-""")
-
-       
-doc2 = NumpyDocString("""
-    Returns array of indices of the maximum values of along the given axis.
-
-    Parameters
-    ----------
-    a : {array_like}
-        Array to look in.
-    axis : {None, integer}
-        If None, the index is into the flattened array, otherwise along
-        the specified axis""")
-
-def test_parameters_without_extended_description():
-    assert_equal(len(doc2['Parameters']), 2)
-
-doc3 = NumpyDocString("""
-    my_signature(*params, **kwds)
-
-    Return this and that.
-    """)
-
-def test_escape_stars():
-    signature = str(doc3).split('\n')[0]
-    assert_equal(signature, 'my_signature(\*params, \*\*kwds)')
-
-doc4 = NumpyDocString(
-    """a.conj()
-
-    Return an array with all complex-valued elements conjugated.""")
-
-def test_empty_extended_summary():
-    assert_equal(doc4['Extended Summary'], [])
-
-doc5 = NumpyDocString(
-    """
-    a.something()
-
-    Raises
-    ------
-    LinAlgException
-        If array is singular.
-
-    Warns
-    -----
-    SomeWarning
-        If needed
-    """)
-
-def test_raises():
-    assert_equal(len(doc5['Raises']), 1)
-    name,_,desc = doc5['Raises'][0]
-    assert_equal(name,'LinAlgException')
-    assert_equal(desc,['If array is singular.'])
-
-def test_warns():
-    assert_equal(len(doc5['Warns']), 1)
-    name,_,desc = doc5['Warns'][0]
-    assert_equal(name,'SomeWarning')
-    assert_equal(desc,['If needed'])
-
-def test_see_also():
-    doc6 = NumpyDocString(
-    """
-    z(x,theta)
-
-    See Also
-    --------
-    func_a, func_b, func_c
-    func_d : some equivalent func
-    foo.func_e : some other func over
-             multiple lines
-    func_f, func_g, :meth:`func_h`, func_j,
-    func_k
-    :obj:`baz.obj_q`
-    :class:`class_j`: fubar
-        foobar
-    """)
-
-    assert len(doc6['See Also']) == 12
-    for func, desc, role in doc6['See Also']:
-        if func in ('func_a', 'func_b', 'func_c', 'func_f',
-                    'func_g', 'func_h', 'func_j', 'func_k', 'baz.obj_q'):
-            assert(not desc)
-        else:
-            assert(desc)
-
-        if func == 'func_h':
-            assert role == 'meth'
-        elif func == 'baz.obj_q':
-            assert role == 'obj'
-        elif func == 'class_j':
-            assert role == 'class'
-        else:
-            assert role is None
-
-        if func == 'func_d':
-            assert desc == ['some equivalent func']
-        elif func == 'foo.func_e':
-            assert desc == ['some other func over', 'multiple lines']
-        elif func == 'class_j':
-            assert desc == ['fubar', 'foobar']
-
-def test_see_also_print():
-    class Dummy(object):
-        """
-        See Also
-        --------
-        func_a, func_b
-        func_c : some relationship
-                 goes here
-        func_d
-        """
-        pass
-
-    obj = Dummy()
-    s = str(FunctionDoc(obj, role='func'))
-    assert(':func:`func_a`, :func:`func_b`' in s)
-    assert('    some relationship' in s)
-    assert(':func:`func_d`' in s)
-
-doc7 = NumpyDocString("""
-
-        Doc starts on second line.
-
-        """)
-
-def test_empty_first_line():
-    assert doc7['Summary'][0].startswith('Doc starts')
-
-
-def test_no_summary():
-    str(SphinxDocString("""
-    Parameters
-    ----------"""))
-
-
-def test_unicode():
-    doc = SphinxDocString("""
-    öäöäöäöäöåååå
-
-    öäöäöäööäååå
-
-    Parameters
-    ----------
-    ååå : äää
-        ööö
-
-    Returns
-    -------
-    ååå : ööö
-        äää
-
-    """)
-    assert doc['Summary'][0] == u'öäöäöäöäöåååå'.encode('utf-8')
-
-def test_plot_examples():
-    cfg = dict(use_plots=True)
-
-    doc = SphinxDocString("""
-    Examples
-    --------
-    >>> import matplotlib.pyplot as plt
-    >>> plt.plot([1,2,3],[4,5,6])
-    >>> plt.show()
-    """, config=cfg)
-    assert 'plot::' in str(doc), str(doc)
-
-    doc = SphinxDocString("""
-    Examples
-    --------
-    .. plot::
-    
-       import matplotlib.pyplot as plt
-       plt.plot([1,2,3],[4,5,6])
-       plt.show()
-    """, config=cfg)
-    assert str(doc).count('plot::') == 1, str(doc)
-
-def test_class_members():
-
-    class Dummy(object):
-        """
-        Dummy class.
-
-        """
-        def spam(self, a, b):
-            """Spam\n\nSpam spam."""
-            pass
-        def ham(self, c, d):
-            """Cheese\n\nNo cheese."""
-            pass
-
-    for cls in (ClassDoc, SphinxClassDoc):
-        doc = cls(Dummy, config=dict(show_class_members=False))
-        assert 'Methods' not in str(doc), (cls, str(doc))
-        assert 'spam' not in str(doc), (cls, str(doc))
-        assert 'ham' not in str(doc), (cls, str(doc))
-
-        doc = cls(Dummy, config=dict(show_class_members=True))
-        assert 'Methods' in str(doc), (cls, str(doc))
-        assert 'spam' in str(doc), (cls, str(doc))
-        assert 'ham' in str(doc), (cls, str(doc))
-
-        if cls is SphinxClassDoc:
-            assert '.. autosummary::' in str(doc), str(doc)
-
-if __name__ == "__main__":
-    import nose
-    nose.run()
-

=== removed file '.pc/applied-patches'
--- .pc/applied-patches	2011-08-25 23:56:45 +0000
+++ .pc/applied-patches	1970-01-01 00:00:00 +0000
@@ -1,5 +0,0 @@
-02_build_dotblas.patch
-03_force_f2py_version.patch
-10_use_local_python.org_object.inv_sphinx.diff
-20_disable-plot-extension.patch
-debian-changes-1:1.5.1-2ubuntu2

=== removed directory '.pc/debian-changes-1:1.5.1-2ubuntu2'
=== removed directory '.pc/debian-changes-1:1.5.1-2ubuntu2/numpy'
=== removed directory '.pc/debian-changes-1:1.5.1-2ubuntu2/numpy/distutils'
=== removed directory '.pc/debian-changes-1:1.5.1-2ubuntu2/numpy/distutils/fcompiler'
=== removed file '.pc/debian-changes-1:1.5.1-2ubuntu2/numpy/distutils/fcompiler/gnu.py'
--- .pc/debian-changes-1:1.5.1-2ubuntu2/numpy/distutils/fcompiler/gnu.py	2011-08-25 23:56:45 +0000
+++ .pc/debian-changes-1:1.5.1-2ubuntu2/numpy/distutils/fcompiler/gnu.py	1970-01-01 00:00:00 +0000
@@ -1,380 +0,0 @@
-import re
-import os
-import sys
-import warnings
-import platform
-import tempfile
-from subprocess import Popen, PIPE, STDOUT
-
-from numpy.distutils.cpuinfo import cpu
-from numpy.distutils.fcompiler import FCompiler
-from numpy.distutils.exec_command import exec_command
-from numpy.distutils.misc_util import msvc_runtime_library
-from numpy.distutils.compat import get_exception
-
-compilers = ['GnuFCompiler', 'Gnu95FCompiler']
-
-TARGET_R = re.compile("Target: ([a-zA-Z0-9_\-]*)")
-
-# XXX: handle cross compilation
-def is_win64():
-    return sys.platform == "win32" and platform.architecture()[0] == "64bit"
-
-if is_win64():
-    #_EXTRAFLAGS = ["-fno-leading-underscore"]
-    _EXTRAFLAGS = []
-else:
-    _EXTRAFLAGS = []
-
-class GnuFCompiler(FCompiler):
-    compiler_type = 'gnu'
-    compiler_aliases = ('g77',)
-    description = 'GNU Fortran 77 compiler'
-
-    def gnu_version_match(self, version_string):
-        """Handle the different versions of GNU fortran compilers"""
-        m = re.match(r'GNU Fortran', version_string)
-        if not m:
-            return None
-        m = re.match(r'GNU Fortran\s+95.*?([0-9-.]+)', version_string)
-        if m:
-            return ('gfortran', m.group(1))
-        m = re.match(r'GNU Fortran.*?([0-9-.]+)', version_string)
-        if m:
-            v = m.group(1)
-            if v.startswith('0') or v.startswith('2') or v.startswith('3'):
-                # the '0' is for early g77's
-                return ('g77', v)
-            else:
-                # at some point in the 4.x series, the ' 95' was dropped
-                # from the version string
-                return ('gfortran', v)
-
-    def version_match(self, version_string):
-        v = self.gnu_version_match(version_string)
-        if not v or v[0] != 'g77':
-            return None
-        return v[1]
-
-    # 'g77 --version' results
-    # SunOS: GNU Fortran (GCC 3.2) 3.2 20020814 (release)
-    # Debian: GNU Fortran (GCC) 3.3.3 20040110 (prerelease) (Debian)
-    #         GNU Fortran (GCC) 3.3.3 (Debian 20040401)
-    #         GNU Fortran 0.5.25 20010319 (prerelease)
-    # Redhat: GNU Fortran (GCC 3.2.2 20030222 (Red Hat Linux 3.2.2-5)) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)
-    # GNU Fortran (GCC) 3.4.2 (mingw-special)
-
-    possible_executables = ['g77', 'f77']
-    executables = {
-        'version_cmd'  : [None, "--version"],
-        'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"],
-        'compiler_f90' : None, # Use --fcompiler=gnu95 for f90 codes
-        'compiler_fix' : None,
-        'linker_so'    : [None, "-g", "-Wall"],
-        'archiver'     : ["ar", "-cr"],
-        'ranlib'       : ["ranlib"],
-        'linker_exe'   : [None, "-g", "-Wall"]
-        }
-    module_dir_switch = None
-    module_include_switch = None
-
-    # Cygwin: f771: warning: -fPIC ignored for target (all code is
-    # position independent)
-    if os.name != 'nt' and sys.platform != 'cygwin':
-        pic_flags = ['-fPIC']
-
-    # use -mno-cygwin for g77 when Python is not Cygwin-Python
-    if sys.platform == 'win32':
-        for key in ['version_cmd', 'compiler_f77', 'linker_so', 'linker_exe']:
-            executables[key].append('-mno-cygwin')
-
-    g2c = 'g2c'
-
-    suggested_f90_compiler = 'gnu95'
-
-    #def get_linker_so(self):
-    #    # win32 linking should be handled by standard linker
-    #    # Darwin g77 cannot be used as a linker.
-    #    #if re.match(r'(darwin)', sys.platform):
-    #    #    return
-    #    return FCompiler.get_linker_so(self)
-
-    def get_flags_linker_so(self):
-        opt = self.linker_so[1:]
-        if sys.platform=='darwin':
-            target = os.environ.get('MACOSX_DEPLOYMENT_TARGET', None)
-            # If MACOSX_DEPLOYMENT_TARGET is set, we simply trust the value
-            # and leave it alone.  But, distutils will complain if the
-            # environment's value is different from the one in the Python
-            # Makefile used to build Python.  We let disutils handle this
-            # error checking.
-            if not target:
-                # If MACOSX_DEPLOYMENT_TARGET is not set in the environment,
-                # we try to get it first from the Python Makefile and then we
-                # fall back to setting it to 10.3 to maximize the set of
-                # versions we can work with.  This is a reasonable default
-                # even when using the official Python dist and those derived
-                # from it.
-                import distutils.sysconfig as sc
-                g = {}
-                filename = sc.get_makefile_filename()
-                sc.parse_makefile(filename, g)
-                target = g.get('MACOSX_DEPLOYMENT_TARGET', '10.3')
-                os.environ['MACOSX_DEPLOYMENT_TARGET'] = target
-                if target == '10.3':
-                    s = 'Env. variable MACOSX_DEPLOYMENT_TARGET set to 10.3'
-                    warnings.warn(s)
-
-            opt.extend(['-undefined', 'dynamic_lookup', '-bundle'])
-        else:
-            opt.append("-shared")
-        if sys.platform.startswith('sunos'):
-            # SunOS often has dynamically loaded symbols defined in the
-            # static library libg2c.a  The linker doesn't like this.  To
-            # ignore the problem, use the -mimpure-text flag.  It isn't
-            # the safest thing, but seems to work. 'man gcc' says:
-            # ".. Instead of using -mimpure-text, you should compile all
-            #  source code with -fpic or -fPIC."
-            opt.append('-mimpure-text')
-        return opt
-
-    def get_libgcc_dir(self):
-        status, output = exec_command(self.compiler_f77 +
-                                      ['-print-libgcc-file-name'],
-                                      use_tee=0)
-        if not status:
-            return os.path.dirname(output)
-        return None
-
-    def get_library_dirs(self):
-        opt = []
-        if sys.platform[:5] != 'linux':
-            d = self.get_libgcc_dir()
-            if d:
-                # if windows and not cygwin, libg2c lies in a different folder
-                if sys.platform == 'win32' and not d.startswith('/usr/lib'):
-                    d = os.path.normpath(d)
-                    if not os.path.exists(os.path.join(d, "lib%s.a" % self.g2c)):
-                        d2 = os.path.abspath(os.path.join(d,
-                                                          '../../../../lib'))
-                        if os.path.exists(os.path.join(d2, "lib%s.a" % self.g2c)):
-                            opt.append(d2)
-                opt.append(d)
-        return opt
-
-    def get_libraries(self):
-        opt = []
-        d = self.get_libgcc_dir()
-        if d is not None:
-            g2c = self.g2c + '-pic'
-            f = self.static_lib_format % (g2c, self.static_lib_extension)
-            if not os.path.isfile(os.path.join(d,f)):
-                g2c = self.g2c
-        else:
-            g2c = self.g2c
-
-        if g2c is not None:
-            opt.append(g2c)
-        c_compiler = self.c_compiler
-        if sys.platform == 'win32' and c_compiler and \
-               c_compiler.compiler_type=='msvc':
-            # the following code is not needed (read: breaks) when using MinGW
-            # in case want to link F77 compiled code with MSVC
-            opt.append('gcc')
-            runtime_lib = msvc_runtime_library()
-            if runtime_lib:
-                opt.append(runtime_lib)
-        if sys.platform == 'darwin':
-            opt.append('cc_dynamic')
-        return opt
-
-    def get_flags_debug(self):
-        return ['-g']
-
-    def get_flags_opt(self):
-        v = self.get_version()
-        if v and v<='3.3.3':
-            # With this compiler version building Fortran BLAS/LAPACK
-            # with -O3 caused failures in lib.lapack heevr,syevr tests.
-            opt = ['-O2']
-        else:
-            opt = ['-O3']
-        opt.append('-funroll-loops')
-        return opt
-
-    def _c_arch_flags(self):
-        """ Return detected arch flags from CFLAGS """
-        from distutils import sysconfig
-        try:
-            cflags = sysconfig.get_config_vars()['CFLAGS']
-        except KeyError:
-            return []
-        arch_re = re.compile(r"-arch\s+(\w+)")
-        arch_flags = []
-        for arch in arch_re.findall(cflags):
-            arch_flags += ['-arch', arch]
-        return arch_flags
-
-    def get_flags_arch(self):
-        return []
-
-class Gnu95FCompiler(GnuFCompiler):
-    compiler_type = 'gnu95'
-    compiler_aliases = ('gfortran',)
-    description = 'GNU Fortran 95 compiler'
-
-    def version_match(self, version_string):
-        v = self.gnu_version_match(version_string)
-        if not v or v[0] != 'gfortran':
-            return None
-        return v[1]
-
-    # 'gfortran --version' results:
-    # XXX is the below right?
-    # Debian: GNU Fortran 95 (GCC 4.0.3 20051023 (prerelease) (Debian 4.0.2-3))
-    #         GNU Fortran 95 (GCC) 4.1.2 20061115 (prerelease) (Debian 4.1.1-21)
-    # OS X: GNU Fortran 95 (GCC) 4.1.0
-    #       GNU Fortran 95 (GCC) 4.2.0 20060218 (experimental)
-    #       GNU Fortran (GCC) 4.3.0 20070316 (experimental)
-
-    possible_executables = ['gfortran', 'f95']
-    executables = {
-        'version_cmd'  : ["<F90>", "--version"],
-        'compiler_f77' : [None, "-Wall", "-ffixed-form",
-		"-fno-second-underscore"] + _EXTRAFLAGS,
-        'compiler_f90' : [None, "-Wall", "-fno-second-underscore"] + _EXTRAFLAGS,
-        'compiler_fix' : [None, "-Wall", "-ffixed-form",
-                          "-fno-second-underscore"] + _EXTRAFLAGS,
-        'linker_so'    : ["<F90>", "-Wall"],
-        'archiver'     : ["ar", "-cr"],
-        'ranlib'       : ["ranlib"],
-        'linker_exe'   : [None, "-Wall"]
-        }
-
-    # use -mno-cygwin flag for g77 when Python is not Cygwin-Python
-    if sys.platform == 'win32':
-        for key in ['version_cmd', 'compiler_f77', 'compiler_f90',
-                    'compiler_fix', 'linker_so', 'linker_exe']:
-            executables[key].append('-mno-cygwin')
-
-    module_dir_switch = '-J'
-    module_include_switch = '-I'
-
-    g2c = 'gfortran'
-
-    def _universal_flags(self, cmd):
-        """Return a list of -arch flags for every supported architecture."""
-        if not sys.platform == 'darwin':
-            return []
-        arch_flags = []
-        # get arches the C compiler gets.
-        c_archs = self._c_arch_flags()
-        if "i386" in c_archs:
-            c_archs[c_archs.index("i386")] = "i686"
-        # check the arches the Fortran compiler supports, and compare with
-        # arch flags from C compiler
-        for arch in ["ppc", "i686", "x86_64", "ppc64"]:
-            if _can_target(cmd, arch) and arch in c_archs:
-                arch_flags.extend(["-arch", arch])
-        return arch_flags
-
-    def get_flags(self):
-        flags = GnuFCompiler.get_flags(self)
-        arch_flags = self._universal_flags(self.compiler_f90)
-        if arch_flags:
-            flags[:0] = arch_flags
-        return flags
-
-    def get_flags_linker_so(self):
-        flags = GnuFCompiler.get_flags_linker_so(self)
-        arch_flags = self._universal_flags(self.linker_so)
-        if arch_flags:
-            flags[:0] = arch_flags
-        return flags
-
-    def get_library_dirs(self):
-        opt = GnuFCompiler.get_library_dirs(self)
-        if sys.platform == 'win32':
-            c_compiler = self.c_compiler
-            if c_compiler and c_compiler.compiler_type == "msvc":
-                target = self.get_target()
-                if target:
-                    d = os.path.normpath(self.get_libgcc_dir())
-                    root = os.path.join(d, os.pardir, os.pardir, os.pardir, os.pardir)
-                    mingwdir = os.path.normpath(os.path.join(root, target, "lib"))
-                    full = os.path.join(mingwdir, "libmingwex.a")
-                    if os.path.exists(full):
-                        opt.append(mingwdir)
-        return opt
-
-    def get_libraries(self):
-        opt = GnuFCompiler.get_libraries(self)
-        if sys.platform == 'darwin':
-            opt.remove('cc_dynamic')
-        if sys.platform == 'win32':
-            c_compiler = self.c_compiler
-            if c_compiler and c_compiler.compiler_type == "msvc":
-                if "gcc" in opt:
-                    i = opt.index("gcc")
-                    opt.insert(i+1, "mingwex")
-                    opt.insert(i+1, "mingw32")
-            # XXX: fix this mess, does not work for mingw
-            if is_win64():
-                c_compiler = self.c_compiler
-                if c_compiler and c_compiler.compiler_type == "msvc":
-                    return []
-                else:
-                    raise NotImplementedError("Only MS compiler supported with gfortran on win64")
-        return opt
-
-    def get_target(self):
-        status, output = exec_command(self.compiler_f77 +
-                                      ['-v'],
-                                      use_tee=0)
-        if not status:
-            m = TARGET_R.search(output)
-            if m:
-                return m.group(1)
-        return ""
-
-    def get_flags_opt(self):
-        if is_win64():
-            return ['-O0']
-        else:
-            return GnuFCompiler.get_flags_opt(self)
-
-def _can_target(cmd, arch):
-    """Return true is the command supports the -arch flag for the given
-    architecture."""
-    newcmd = cmd[:]
-    fid, filename = tempfile.mkstemp(suffix=".f")
-    try:
-        d = os.path.dirname(filename)
-        output = os.path.splitext(filename)[0] + ".o"
-        try:
-            newcmd.extend(["-arch", arch, "-c", filename])
-            p = Popen(newcmd, stderr=STDOUT, stdout=PIPE, cwd=d)
-            p.communicate()
-            return p.returncode == 0
-        finally:
-            if os.path.exists(output):
-                os.remove(output)
-    finally:
-        os.remove(filename)
-    return False
-
-if __name__ == '__main__':
-    from distutils import log
-    log.set_verbosity(2)
-    compiler = GnuFCompiler()
-    compiler.customize()
-    print(compiler.get_version())
-    raw_input('Press ENTER to continue...')
-    try:
-        compiler = Gnu95FCompiler()
-        compiler.customize()
-        print(compiler.get_version())
-    except Exception:
-        msg = get_exception()
-        print(msg)
-    raw_input('Press ENTER to continue...')

=== modified file 'DEV_README.txt'
--- DEV_README.txt	2009-08-25 11:13:37 +0000
+++ DEV_README.txt	2012-02-12 15:09:21 +0000
@@ -3,7 +3,7 @@
 
 We have a few simple rules: 
 
-   * try hard to keep the SVN repository in a buildable state and to not
+   * try hard to keep the Git repository in a buildable state and to not
      indiscriminately muck with what others have contributed.
 
    * Simple changes (including bug fixes) and obvious improvements are 
@@ -14,6 +14,6 @@
    * Please add meaningful comments when you check changes in.  These
      comments form the basis of the change-log.  
 
-   * Add unit tests to excercise new code, and regression tests
+   * Add unit tests to exercise new code, and regression tests
      whenever you fix a bug.
 

=== modified file 'INSTALL.txt'
--- INSTALL.txt	2009-08-25 11:13:37 +0000
+++ INSTALL.txt	2012-02-12 15:09:21 +0000
@@ -27,12 +27,12 @@
 
    Python must also be compiled with the zlib module enabled.
 
-2) nose__ (pptional) 0.10.3 or later
+2) nose__ (optional) 0.10.3 or later
 
    This is required for testing numpy, but not for using it.
 
 Python__ http://www.python.org
-nose__ http://somethingaboutorange.com/mrl/projects/nose/ 
+nose__ http://somethingaboutorange.com/mrl/projects/nose/
 
 Fortran ABI mismatch
 ====================

=== modified file 'MANIFEST.in'
--- MANIFEST.in	2010-07-17 11:50:56 +0000
+++ MANIFEST.in	2012-02-12 15:09:21 +0000
@@ -4,10 +4,13 @@
 # data, etc files to distribution. Avoid using MANIFEST.in for that.
 #
 include MANIFEST.in
-include LICENSE.txt
+include COMPATIBILITY
+include *.txt
 include setupscons.py
 include setupsconsegg.py
 include setupegg.py
+include site.cfg.example
+include tools/py3tool.py
 # Adding scons build related files not found by distutils
 recursive-include numpy/core/code_generators *.py *.txt
 recursive-include numpy/core *.in *.h
@@ -18,3 +21,6 @@
 recursive-include doc/release *
 recursive-include doc/source *
 recursive-include doc/sphinxext *
+recursive-include doc/cython *
+recursive-include doc/pyrex *
+recursive-include doc/swig *

=== modified file 'PKG-INFO'
--- PKG-INFO	2010-12-24 00:14:25 +0000
+++ PKG-INFO	2012-02-12 15:09:21 +0000
@@ -1,6 +1,6 @@
 Metadata-Version: 1.0
 Name: numpy
-Version: 1.5.1
+Version: 1.6.1
 Summary: NumPy: array processing for numbers, strings, records, and objects.
 Home-page: http://numpy.scipy.org
 Author: NumPy Developers
@@ -29,6 +29,7 @@
 Classifier: License :: OSI Approved
 Classifier: Programming Language :: C
 Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
 Classifier: Topic :: Software Development
 Classifier: Topic :: Scientific/Engineering
 Classifier: Operating System :: Microsoft :: Windows

=== modified file 'README.txt'
--- README.txt	2010-12-24 00:14:25 +0000
+++ README.txt	2012-02-12 15:09:21 +0000
@@ -16,6 +16,12 @@
 
 python -c 'import numpy; numpy.test()'
 
+When installing a new version of numpy for the first time or before upgrading
+to a newer version, it is recommended to turn on deprecation warnings when
+running the tests:
+
+python -Wd -c 'import numpy; numpy.test()'
+
 The most current development version is always available from our
 git repository:
 

=== modified file 'THANKS.txt'
--- THANKS.txt	2009-08-25 11:13:37 +0000
+++ THANKS.txt	2012-02-12 15:09:21 +0000
@@ -47,6 +47,8 @@
 Alan McIntyre for updating the NumPy test framework to use nose, improve
     the test coverage, and enhancing the test system documentation.
 Joe Harrington for administering the 2008 Documentation Sprint.
+Mark Wiebe for the new NumPy iterator, the float16 data type, improved
+    low-level data type operations, and other NumPy core improvements.
 
 NumPy is based on the Numeric (Jim Hugunin, Paul Dubois, Konrad
 Hinsen, and David Ascher) and NumArray (Perry Greenfield, J Todd

=== added directory 'benchmarks'
=== added file 'benchmarks/benchmark.py'
--- benchmarks/benchmark.py	1970-01-01 00:00:00 +0000
+++ benchmarks/benchmark.py	2012-02-12 15:09:21 +0000
@@ -0,0 +1,42 @@
+from timeit import Timer
+
+class Benchmark(dict):
+    """Benchmark a feature in different modules."""
+
+    def __init__(self,modules,title='',runs=3,reps=1000):
+        self.module_test = dict((m,'') for m in modules)
+        self.runs = runs
+        self.reps = reps
+        self.title = title
+
+    def __setitem__(self,module,(test_str,setup_str)):
+        """Set the test code for modules."""
+        if module == 'all':
+            modules = self.module_test.keys()
+        else:
+            modules = [module]
+
+        for m in modules:
+            setup_str = 'import %s; import %s as np; ' % (m,m) \
+                        + setup_str
+            self.module_test[m] = Timer(test_str, setup_str)
+
+    def run(self):
+        """Run the benchmark on the different modules."""
+        module_column_len = max(len(mod) for mod in self.module_test)
+
+        if self.title:
+            print self.title
+        print 'Doing %d runs, each with %d reps.' % (self.runs,self.reps)
+        print '-'*79
+
+        for mod in sorted(self.module_test):
+            modname = mod.ljust(module_column_len)
+            try:
+                print "%s: %s" % (modname, \
+                    self.module_test[mod].repeat(self.runs,self.reps))
+            except Exception, e:
+                print "%s: Failed to benchmark (%s)." % (modname,e)
+
+        print '-'*79
+        print

=== added file 'benchmarks/casting.py'
--- benchmarks/casting.py	1970-01-01 00:00:00 +0000
+++ benchmarks/casting.py	2012-02-12 15:09:21 +0000
@@ -0,0 +1,17 @@
+from benchmark import Benchmark
+
+modules = ['numpy','Numeric','numarray']
+
+b = Benchmark(modules,
+              title='Casting a (10,10) integer array to float.',
+              runs=3,reps=10000)
+
+N = [10,10]
+b['numpy'] = ('b = a.astype(int)',
+              'a=numpy.zeros(shape=%s,dtype=float)' % N)
+b['Numeric'] = ('b = a.astype("l")',
+                'a=Numeric.zeros(shape=%s,typecode="d")' % N)
+b['numarray'] = ("b = a.astype('l')",
+                 "a=numarray.zeros(shape=%s,typecode='d')" % N)
+
+b.run()

=== added file 'benchmarks/creating.py'
--- benchmarks/creating.py	1970-01-01 00:00:00 +0000
+++ benchmarks/creating.py	2012-02-12 15:09:21 +0000
@@ -0,0 +1,14 @@
+from benchmark import Benchmark
+
+modules = ['numpy','Numeric','numarray']
+
+N = [10,10]
+b = Benchmark(modules,
+              title='Creating %s zeros.' % N,
+              runs=3,reps=10000)
+
+b['numpy'] = ('a=np.zeros(shape,type)', 'shape=%s;type=float' % N)
+b['Numeric'] = ('a=np.zeros(shape,type)', 'shape=%s;type=np.Float' % N)
+b['numarray'] = ('a=np.zeros(shape,type)', "shape=%s;type=np.Float" % N)
+
+b.run()

=== added file 'benchmarks/simpleindex.py'
--- benchmarks/simpleindex.py	1970-01-01 00:00:00 +0000
+++ benchmarks/simpleindex.py	2012-02-12 15:09:21 +0000
@@ -0,0 +1,48 @@
+import timeit
+# This is to show that NumPy is a poorer choice than nested Python lists
+#   if you are writing nested for loops.
+# This is slower than Numeric was but Numeric was slower than Python lists were
+#   in the first place.
+
+N = 30
+
+code2 = r"""
+for k in xrange(%d):
+    for l in xrange(%d):
+        res = a[k,l].item() + a[l,k].item()
+""" % (N,N)
+
+code3 = r"""
+for k in xrange(%d):
+    for l in xrange(%d):
+        res = a[k][l] + a[l][k]
+""" % (N,N)
+
+code = r"""
+for k in xrange(%d):
+    for l in xrange(%d):
+        res = a[k,l] + a[l,k]
+""" % (N,N)
+
+setup3 = r"""
+import random
+a = [[None for k in xrange(%d)] for l in xrange(%d)]
+for k in xrange(%d):
+    for l in xrange(%d):
+        a[k][l] = random.random()
+""" % (N,N,N,N)
+
+numpy_timer1 = timeit.Timer(code, 'import numpy as np; a = np.random.rand(%d,%d)' % (N,N))
+numeric_timer = timeit.Timer(code, 'import MLab as np; a=np.rand(%d,%d)' % (N,N))
+numarray_timer = timeit.Timer(code, 'import numarray.mlab as np; a=np.rand(%d,%d)' % (N,N))
+numpy_timer2 = timeit.Timer(code2, 'import numpy as np; a = np.random.rand(%d,%d)' % (N,N))
+python_timer = timeit.Timer(code3, setup3)
+numpy_timer3 = timeit.Timer("res = a + a.transpose()","import numpy as np; a=np.random.rand(%d,%d)" % (N,N))
+
+print "shape = ", (N,N)
+print "NumPy 1: ", numpy_timer1.repeat(3,100)
+print "NumPy 2: ", numpy_timer2.repeat(3,100)
+print "Numeric: ", numeric_timer.repeat(3,100)
+print "Numarray: ", numarray_timer.repeat(3,100)
+print "Python: ", python_timer.repeat(3,100)
+print "Optimized: ", numpy_timer3.repeat(3,100)

=== added file 'benchmarks/sorting.py'
--- benchmarks/sorting.py	1970-01-01 00:00:00 +0000
+++ benchmarks/sorting.py	2012-02-12 15:09:21 +0000
@@ -0,0 +1,25 @@
+from benchmark import Benchmark
+
+modules = ['numpy','Numeric','numarray']
+b = Benchmark(modules,runs=3,reps=100)
+
+N = 10000
+b.title = 'Sorting %d elements' % N
+b['numarray'] = ('a=np.array(None,shape=%d,typecode="i");a.sort()'%N,'')
+b['numpy'] = ('a=np.empty(shape=%d, dtype="i");a.sort()'%N,'')
+b['Numeric'] = ('a=np.empty(shape=%d, typecode="i");np.sort(a)'%N,'')
+b.run()
+
+N1,N2 = 100,100
+b.title = 'Sorting (%d,%d) elements, last axis' % (N1,N2)
+b['numarray'] = ('a=np.array(None,shape=(%d,%d),typecode="i");a.sort()'%(N1,N2),'')
+b['numpy'] = ('a=np.empty(shape=(%d,%d), dtype="i");a.sort()'%(N1,N2),'')
+b['Numeric'] = ('a=np.empty(shape=(%d,%d),typecode="i");np.sort(a)'%(N1,N2),'')
+b.run()
+
+N1,N2 = 100,100
+b.title = 'Sorting (%d,%d) elements, first axis' % (N1,N2)
+b['numarray'] = ('a=np.array(None,shape=(%d,%d), typecode="i");a.sort(0)'%(N1,N2),'')
+b['numpy'] = ('a=np.empty(shape=(%d,%d),dtype="i");np.sort(a,0)'%(N1,N2),'')
+b['Numeric'] = ('a=np.empty(shape=(%d,%d),typecode="i");np.sort(a,0)'%(N1,N2),'')
+b.run()

=== modified file 'debian/README.DebianMaints'
--- debian/README.DebianMaints	2010-07-28 00:05:00 +0000
+++ debian/README.DebianMaints	2012-02-12 15:09:21 +0000
@@ -3,26 +3,32 @@
 
 With Numpy 1.4.1 upload in unstable, we had several packages failing
 to execute due to a change in 'dtype' format (some fields were added
-at the end of the data strucutre).
+at the end of the data structure).
 
 After that, we decided to provide a reliable way to specify strict
 versioned depends on python-numpy by the packages depending on it, in
 order to avoid similar failures in future uploads.
 
-Currently you have two ways to do that:
-
-* dh_numpy, that will add python-numpy versioned depends (using pydist
-  file information, see below) to python:Depends substvar
-
-* dh_python2 and the pydist file shipped by python-numpy,
-  /usr/share/python/di st/python-numpy; you can read more out pydist
-  files at [1].
-
-[1] http://alioth.debian.org/scm/loggerhead/pkg-python/python-defaults-debian/annotate/head:/README.PyDist
-
-python-support will receive the same support for pydist as of
-dh_python2, but it's not already implemented at the time or
-writing. So, in case you don't want to use dh_python2, use dh_numpy
-helper script.
-
- -- Sandro Tosi <[e-mail]>  Tue, 27 Jul 2010 23:28:11 +0200
\ No newline at end of file
+python-numpy provides a debhelper tool, dh_numpy, that will add Numpy
+dependencies to python:Depends substvar; what dh_numpy does is:
+
+* if the package is arch:all, a simple dependency on 'python-numpy' is
+  added;
+* if the package is arch:any, two dependencies are added:
+  * python-numpy-abi$N, where N is the value for the current Numpy
+    ABI, as defined by upstream C_ABI_VERSION value;
+  * python-numpy (>= $VER), where VER is the minimum python-numpy
+    package version implementing the current Numpy API, as defined by
+    upstream C_API_VERSION value.
+* if the package is arch:any and the '--strict' command-line option is
+  passed to dh_numpy, a dependency against python-numpy-api$M is
+  added, where M is the value for the current Numpy API, as defined by
+  upstream C_API_VERSION value.
+
+The current values for API, ABI and version are available in the file
+/usr/share/numpy/versions .
+
+You should call dh_numpy regardless of the python helper you are using
+in the package.
+
+ -- Sandro Tosi <[e-mail]>  Sun, 29 Jan 2012 11:01:45 +0100

=== modified file 'debian/changelog'
--- debian/changelog	2011-12-17 17:22:00 +0000
+++ debian/changelog	2012-02-12 15:09:21 +0000
@@ -1,3 +1,108 @@
+python-numpy (1:1.6.1-5ubuntu1) precise; urgency=low
+
+  * debian/patches/search-multiarch-paths.patch: (LP: #818867)
+    - add multiarch libdirs to numpy.distutils.system_info
+  * Merge from Debian unstable, remaining changes:
+    - debian/patches/20_disable-plot-extension.patch
+       Disable plot_directive extension, and catch ImportErrors when
+       matplotlib cannot be imported, which allows us to remove
+       python-matplotlib from dependencies.  This is required because
+       python-numpy is in main, while python-matplotlib is in universe.
+    - Build using dh_python2
+      add bin/f2py* to .install files
+    - keep Replaces: python-numpy (<< 1:1.3.0-4) in python-numpy-dbg
+      for lucid upgrades
+
+ -- Julian Taylor <[e-mail]>  Sat, 11 Feb 2012 12:55:21 +0100
+
+python-numpy (1:1.6.1-5) experimental; urgency=low
+
+  * debian/versions
+    - bump also api-min-version; thanks to Jakub Wilk for noticing it.
+
+ -- Sandro Tosi <[e-mail]>  Thu, 09 Feb 2012 22:34:35 +0100
+
+python-numpy (1:1.6.1-4) experimental; urgency=low
+
+  [ Yaroslav Halchenko ]
+  * debian/rules
+    - Check for nocheck instead of notest (policy 4.9.1)
+
+  [ Sandro Tosi ]
+  * Release fix for #643873 in experimental too, bumping API version to 6
+
+ -- Sandro Tosi <[e-mail]>  Thu, 09 Feb 2012 21:44:17 +0100
+
+python-numpy (1:1.6.1-3) experimental; urgency=low
+
+  * debian/{control, rules}
+    - run tests at package build time; Closes: #601592
+
+ -- Sandro Tosi <[e-mail]>  Fri, 23 Sep 2011 23:18:03 +0200
+
+python-numpy (1:1.6.1-2) experimental; urgency=low
+
+  * debian/python.org_objects.inv
+    - updated
+  * debian/source/include-binaries
+    - python.org_objects.inv is now binary so it needs whitelisting
+  * debian/rules
+    - call dh_sphinxdoc only for binary-indep packages, fixing a FTBFS on all
+      the buildbots
+
+ -- Sandro Tosi <[e-mail]>  Sat, 17 Sep 2011 11:50:35 +0200
+
+python-numpy (1:1.6.1-1) experimental; urgency=low
+
+  * New upstream release; Closes: #633576
+    - use DeprecationWarning instead of warning; Closes: #519483
+    - fix lapack interface handling of non-native byte order: Closes: #581043
+  * debian/python-numpy.docs
+    - install benchmarks/ dir in the documentation
+  * debian/copyright
+    - updated
+  * debian/rules
+    - adjust pdist versions
+    - install debug files where gdb will look for them
+  * debian/control
+    - remove Ondrej, Alexandre, Matthias, David from Uploaders: thanks for all
+      the work you did!
+    - bump Standards-Version to 3.9.2 (no changes needed)
+    - removed DM-U-A flag, no more needed
+    - removed useless fields
+  * debian/{control, rules}
+    - use dh_sphinxdoc
+  * debian/python-numpy-doc.lintian-overrides
+    - added to override extra-license-file, generated by a file needed by sphinx
+
+ -- Sandro Tosi <[e-mail]>  Fri, 16 Sep 2011 20:02:50 +0200
+
+python-numpy (1:1.5.1-4) unstable; urgency=low
+
+  [ Jakub Wilk ]
+  * Enhancement to dh_numpy: now it is able to generate dependencies also on
+    virtual packages matching Numpy API and ABI versions; this allows the
+    packages to declare less strict relationships with python-numpy, improving
+    the ability to handle Numpy newer versions transitions. A detailed
+    description of the dependencies generation is available in
+    README.DebianMaints file. Closes: #643873
+
+  [ Sandro Tosi ]
+  * debian/patches/20_sphinx_1.1.2.diff
+    - fix a FTBFS with Sphinx 1.1.2 due to autoindex not being allowed in a
+      glossary section; thanks to Jakub Wilk for the report; Closes: #655635
+
+ -- Sandro Tosi <[e-mail]>  Wed, 01 Feb 2012 19:09:17 +0100
+
+python-numpy (1:1.5.1-3) unstable; urgency=low
+
+  * debian/rules
+    - make /u/b/f2py{,-dbg} real files (not symlink) with the shebang pointing
+      to unversioned python{,-dbg}, this makes the package more binNMU friendly;
+      thanks to Jakub Wilk for the report; Closes: #643857
+
+ -- Sandro Tosi <[e-mail]>  Tue, 04 Oct 2011 11:43:55 +0200
+
 python-numpy (1:1.5.1-2ubuntu3) precise; urgency=low
 
   * Build using dh_python2

=== modified file 'debian/control'
--- debian/control	2011-12-17 17:22:00 +0000
+++ debian/control	2012-02-12 15:09:21 +0000
@@ -3,21 +3,19 @@
 Priority: optional
 Maintainer: Ubuntu Developers <[e-mail]>
 XSBC-Original-Maintainer: Debian Python Modules Team <[e-mail]>
-Uploaders: Alexandre Fayolle <[e-mail]>, Matthias Klose <[e-mail]>, Ondrej Certik <[e-mail]>, David Cournapeau <[e-mail]>, Sandro Tosi <[e-mail]>
-Build-Depends: python-all-dev (>= 2.6.6-3~), python-all-dbg, gfortran (>= 4:4.2), libblas-dev [!arm !m68k], liblapack-dev [!arm !m68k], debhelper (>= 7.0.50~), patchutils, python-docutils, python-sphinx, quilt
+Uploaders: Sandro Tosi <[e-mail]>
+Build-Depends: python-all-dev (>= 2.6.6-3~), python-all-dbg, gfortran (>= 4:4.2), libblas-dev [!arm !m68k], liblapack-dev [!arm !m68k], debhelper (>= 7.0.50~), patchutils, python-docutils, quilt, python-sphinx (>= 1.0.7+dfsg), python-nose
 XS-Python-Version: >= 2.4
-Standards-Version: 3.9.1
+Standards-Version: 3.9.2
 Vcs-Svn: svn://svn.debian.org/python-modules/packages/numpy/trunk
 Vcs-Browser: http://svn.debian.org/viewsvn/python-modules/packages/numpy/trunk/
-XS-DM-Upload-Allowed: yes
 Homepage: http://numpy.scipy.org/
 
 Package: python-numpy
 Architecture: any
 Depends: ${python:Depends}, ${shlibs:Depends}, ${misc:Depends}
 Suggests: python-numpy-doc, python-numpy-dbg, python-nose (>= 0.10.1), python-dev, gfortran
-XB-Python-Version: ${python:Versions}
-Provides: ${python:Provides}, python-numpy-dev, python-f2py
+Provides: ${python:Provides}, ${numpy:Provides}, python-numpy-dev, python-f2py
 Description: Numerical Python adds a fast array facility to the Python language
  Numpy contains a powerful N-dimensional array object, sophisticated
  (broadcasting) functions, tools for integrating C/C++ and Fortran
@@ -34,7 +32,6 @@
 Architecture: any
 Depends: python-numpy (= ${binary:Version}), python-dbg, ${shlibs:Depends}, ${misc:Depends}
 Replaces: python-numpy (<< 1:1.3.0-4)
-XB-Python-Version: ${python:Versions}
 Description: Fast array facility to the Python language (debug extension)
  Numpy contains a powerful N-dimensional array object, sophisticated
  (broadcasting) functions, tools for integrating C/C++ and Fortran
@@ -48,7 +45,7 @@
  This package contains the extension built for the Python debug interpreter.
 
 Package: python-numpy-doc
-Depends: ${misc:Depends}, libjs-jquery
+Depends: ${misc:Depends}, ${sphinxdoc:Depends}
 Section: doc
 Architecture: all
 Description: NumPy documentation

=== modified file 'debian/copyright'
--- debian/copyright	2010-07-17 11:50:56 +0000
+++ debian/copyright	2012-02-12 15:09:21 +0000
@@ -437,7 +437,7 @@
 
 
 numpy/f2py/*
-    Copyright 1999-2005 Pearu Peterson all rights reserved,
+    Copyright 1999-2011 Pearu Peterson all rights reserved,
     Pearu Peterson <[e-mail]>
     Permission to use, modify, and distribute this software is given under the
     terms of the NumPy License.
@@ -469,6 +469,21 @@
     Author: Pierre Gerard-Marchant <pierregm_at_uga_dot_edu>
 
 
+numpy/core/src/multiarray/{lowlevel_strided_loops.c.src, nditer.c.src,
+                           nditer_pywrap.c}
+    Copyright (c) 2010 by Mark Wiebe ([e-mail])
+    The Univerity of British Columbia
+
+
+doc/cython/c_numpy.pxd, doc/pyrex/c_numpy.pxd
+    Author: Travis Oliphant
+
+
+doc/cython/c_python.pxd
+    Author: Robert Kern
+    Copyright: 2004, Enthought, Inc.
+    License: BSD Style
+
 From doc/sphinxext/LICENSE.txt:
 
 -------------------------------------------------------------------------------

=== modified file 'debian/dh_numpy'
--- debian/dh_numpy	2010-07-28 00:05:00 +0000
+++ debian/dh_numpy	2012-02-12 15:09:21 +0000
@@ -1,6 +1,7 @@
 #!/usr/bin/perl -w
 
 # Copyright © 2010 Piotr Ożarowski <[e-mail]>
+# Copyright © 2012 Jakub Wilk <[e-mail]>
 #
 # Permission is hereby granted, free of charge, to any person obtaining a copy
 # of this software and associated documentation files (the "Software"), to deal
@@ -23,24 +24,34 @@
 use strict;
 use Debian::Debhelper::Dh_Lib;
 
-init();
-
-my $numpy_dep;
-
-open(PYDIST, '/usr/share/python/dist/python-numpy') || error("cannot read python-numpy pydist file: $!\n");
-while (<PYDIST>) {
-	my($line) = $_;
-	chomp($line);
-	if ($line =~ /[^\s]*\s([^;]*).*/ ) {
-		$numpy_dep = $1;
+init(options => {
+        "strict" => \$dh{STRICT},
+});
+
+my %data;
+
+open(FILE, '<', '/usr/share/numpy/versions') or error("cannot read version data: $!\n");
+while (<FILE>) {
+	chomp;
+	next unless /^[^#]/;
+	my ($key, $value) = split;
+	$data{$key} = $value;
+}
+close FILE;
+
+unless ($data{'abi'} and $data{'api'} and $data{'api-min-version'}) {
+	error("cannot parse version data file");
+}
+
+foreach my $package (@{$dh{DOPACKAGES}}) {
+	my $numpy_dep;
+	if (package_arch($package) eq 'all') {
+		$numpy_dep = 'python-numpy';
+	} elsif ($dh{STRICT}) {
+		$numpy_dep = "python-numpy-api$data{'api'}";
+	} else {
+		$numpy_dep = "python-numpy (>= $data{'api-min-version'}), python-numpy-abi$data{'abi'}";
 	}
-}
-
-if($numpy_dep eq "") {
-	error ("cannot parse pydist file")
-}
-
-foreach my $package (@{$dh{DOPACKAGES}}) {
 	addsubstvar($package, "python:Depends", $numpy_dep);
 }
 

=== modified file 'debian/dh_numpy.1'
--- debian/dh_numpy.1	2010-07-28 00:05:00 +0000
+++ debian/dh_numpy.1	2012-02-12 15:09:21 +0000
@@ -1,14 +1,14 @@
-.TH DH_NUMPY 1 "2010-07-27" "Numpy"
+.TH DH_NUMPY 1 "2012-01-29" "Numpy"
 .SH NAME
-dh_numpy \- adds to python:Depends the Numpy versioned depends
+dh_numpy \- adds Numpy depends to python:Depends substvar
 .SH SYNOPSYS
 \fBdh_numpy\fR [\fIdebhelper\ options\fR]
 .SH DESCRIPTION
 dh_numpy adds information about the correct versioned depends on python-numpy to python:Depends substvar.
 .PP
-This is needed because some Python extensions require strict versioned depends on python-numpy, and using this helper script is the easiest way to get them.
+This is needed because some Python extensions require strict versioned depends on python-numpy, and using this helper script is the easiest and most consistent way to get them.
 .PP
-The helper script uses the information stored in /usr/share/python/dist/python-numpy to generate the Depends information; that file is also used by dh_python2 (and from dh_pysupport when implemented) to generate the same set of Depends. This script allows you to not use dh_python2 if you don't want to.
+The helper script uses the information stored in /usr/share/numpy/versions, and the architecture type of the package, to generate the Depends information; for a detailed description of how the dependencies are generate, please refer to /usr/share/doc/python-numpy/README.DebianMaints .
 .SH "SEE ALSO"
 \fIdebhelper\fR(7)
 .PP

=== added file 'debian/patches/20_sphinx_1.1.2.diff'
--- debian/patches/20_sphinx_1.1.2.diff	1970-01-01 00:00:00 +0000
+++ debian/patches/20_sphinx_1.1.2.diff	2012-02-12 15:09:21 +0000
@@ -0,0 +1,19 @@
+Description: fix FTBFS with sphinx 1.1.2 because automodule is not allowed in glossary
+Author: Pauli Virtanen
+Origin: https://github.com/numpy/numpy/commit/1451b414693d63d8224857b1c67726eb8d5f97af
+Forwarded: not-needed
+Index: python-numpy-1.5.1/doc/source/glossary.rst
+===================================================================
+--- python-numpy-1.5.1.orig/doc/source/glossary.rst	2010-11-09 00:58:22.000000000 +0100
++++ python-numpy-1.5.1/doc/source/glossary.rst	2012-01-31 23:31:29.323501993 +0100
+@@ -4,9 +4,7 @@
+ 
+ .. toctree::
+ 
+-.. glossary::
+-
+-   .. automodule:: numpy.doc.glossary
++.. automodule:: numpy.doc.glossary
+ 
+ Jargon
+ ------

=== added file 'debian/patches/search-multiarch-paths.patch'
--- debian/patches/search-multiarch-paths.patch	1970-01-01 00:00:00 +0000
+++ debian/patches/search-multiarch-paths.patch	2012-02-12 15:09:21 +0000
@@ -0,0 +1,21 @@
+Description: search multiarch paths for libraries
+ hack to get numpys distutils multiarch aware
+Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/python-numpy/+bug/818867
+Bug-Debian: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=640940
+Author: Julian Taylor <[e-mail]>
+
+--- a/numpy/distutils/system_info.py
++++ b/numpy/distutils/system_info.py
+@@ -201,6 +201,12 @@
+                                      '/usr/lib'], platform_bits)
+     default_x11_include_dirs = ['/usr/X11R6/include','/usr/X11/include',
+                                 '/usr/include']
++    import subprocess as sp
++    p = sp.Popen(["dpkg-architecture", "-qDEB_HOST_MULTIARCH"], stdout=sp.PIPE)
++    triplet = p.communicate()[0].strip()
++    if p.returncode == 0:
++        default_x11_lib_dirs += [os.path.join("/usr/lib/", triplet)]
++        default_lib_dirs += [os.path.join("/usr/lib/", triplet)]
+ 
+ if os.path.join(sys.prefix, 'lib') not in default_lib_dirs:
+     default_lib_dirs.insert(0,os.path.join(sys.prefix, 'lib'))

=== modified file 'debian/patches/series'
--- debian/patches/series	2011-08-25 23:56:45 +0000
+++ debian/patches/series	2012-02-12 15:09:21 +0000
@@ -3,5 +3,6 @@
 03_force_f2py_version.patch
 #05_fix_endianness_detection.patch
 10_use_local_python.org_object.inv_sphinx.diff
+20_sphinx_1.1.2.diff
 20_disable-plot-extension.patch
-debian-changes-1:1.5.1-2ubuntu2
+search-multiarch-paths.patch

=== modified file 'debian/python-numpy-dbg.install'
--- debian/python-numpy-dbg.install	2011-12-17 17:22:00 +0000
+++ debian/python-numpy-dbg.install	2012-02-12 15:09:21 +0000
@@ -1,2 +1,3 @@
+usr/bin/f2py-dbg
 usr/bin/f2py2.?-dbg
 usr/lib/python*/*-packages/*/*/*_d.so

=== added file 'debian/python-numpy-doc.lintian-overrides'
--- debian/python-numpy-doc.lintian-overrides	1970-01-01 00:00:00 +0000
+++ debian/python-numpy-doc.lintian-overrides	2012-02-12 15:09:21 +0000
@@ -0,0 +1,2 @@
+#file needed by sphinx (python-numpy-doc/html/_sources/license.txt)
+extra-license-file

=== modified file 'debian/python-numpy.docs'
--- debian/python-numpy.docs	2010-07-28 00:05:00 +0000
+++ debian/python-numpy.docs	2012-02-12 15:09:21 +0000
@@ -2,3 +2,4 @@
 THANKS.txt
 debian/README.f2py
 debian/README.DebianMaints
+benchmarks/

=== modified file 'debian/python-numpy.install'
--- debian/python-numpy.install	2011-12-17 17:22:00 +0000
+++ debian/python-numpy.install	2012-02-12 15:09:21 +0000
@@ -1,5 +1,7 @@
+usr/bin/f2py
 usr/bin/f2py2.?
 debian/dh_numpy usr/bin
+debian/versions usr/share/numpy/
 usr/lib/python*/*-packages/*/*/*[!_][!_].so
 usr/lib/python*/*-packages/*/*/*/libnpymath.a
 usr/lib/python*/*-packages/*/*.py

=== modified file 'debian/python.org_objects.inv'
--- debian/python.org_objects.inv	2010-07-17 11:50:56 +0000
+++ debian/python.org_objects.inv	2012-02-12 15:09:21 +0000
@@ -1,6923 +1,441 @@
-# Sphinx inventory version 1
+# Sphinx inventory version 2
 # Project: Python
-# Version: 3.2
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-asynchat.async_chat.discard_buffers method library/asynchat.html
-http.client.HTTP_PORT data library/http.client.html
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-msilib.init_database function library/msilib.html
-http.client.IncompleteRead exception library/http.client.html
-tkinter.tix.PopupMenu class library/tkinter.tix.html
-PyUnicode_DecodeFSDefault cfunction c-api/unicode.html
-turtle.getpen function library/turtle.html
-distutils.sysconfig.get_python_lib function distutils/apiref.html
-decimal.Context.exp method library/decimal.html
-shutil.rmtree function library/shutil.html
-socketserver.BaseServer.finish_request method library/socketserver.html
-codecs.StreamWriter class library/codecs.html
-decimal.Decimal.to_eng_string method library/decimal.html
-io.IOBase.seekable method library/io.html
-PyUnicode_Splitlines cfunction c-api/unicode.html
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-difflib.Differ class library/difflib.html
-Py_UNICODE_ISDECIMAL cfunction c-api/unicode.html
-os.killpg function library/os.html
-stringprep.in_table_c21_c22 function library/stringprep.html
-set.copy method library/stdtypes.html
-xmlrpc.server.SimpleXMLRPCServer.register_introspection_functions method library/xmlrpc.server.html
-pstats.Stats.sort_stats method library/profile.html
-zipfile.ZipInfo.compress_size attribute library/zipfile.html
-ssl.RAND_egd function library/ssl.html
-PyDateTime_DATE_GET_MICROSECOND cfunction c-api/datetime.html
-cmd.Cmd.postcmd method library/cmd.html
-datetime.datetime.min attribute library/datetime.html
-PyUnicode_GetSize cfunction c-api/unicode.html
-multiprocessing.connection.Listener.close method library/multiprocessing.html
-http.cookiejar.Cookie.get_nonstandard_attr method library/http.cookiejar.html
-PyUnicode_AsRawUnicodeEscapeString cfunction c-api/unicode.html
-PyWeakref_GetObject cfunction c-api/weakref.html
-gettext.NullTranslations.output_charset method library/gettext.html
-operator.mod function library/operator.html
-contextlib.contextmanager function library/contextlib.html
-object.__rtruediv__ method reference/datamodel.html
-mailbox.MaildirMessage.add_flag method library/mailbox.html
-formatter.formatter.add_literal_data method library/formatter.html
-binascii.a2b_hex function library/binascii.html
-tkinter.ttk.Treeview class library/tkinter.ttk.html
-xml.dom.Document.createTextNode method library/xml.dom.html
-decimal.Decimal.is_snan method library/decimal.html
-threading.Condition.acquire method library/threading.html
-PyUnicode_Replace cfunction c-api/unicode.html
-class.__bases__ attribute library/stdtypes.html
-winreg.REG_MULTI_SZ data library/winreg.html
-zipimport.zipimporter.find_module method library/zipimport.html
-msvcrt.getch function library/msvcrt.html
-configparser.InterpolationDepthError exception library/configparser.html
-tarfile.TarFile.gettarinfo method library/tarfile.html
-mailbox.Mailbox.flush method library/mailbox.html
-email.message.Message.__delitem__ method library/email.message.html
-decimal.Context.is_zero method library/decimal.html
-PyMappingMethods ctype c-api/typeobj.html
-gc.get_threshold function library/gc.html
-curses.window.standout method library/curses.html
-distutils.sysconfig.get_python_inc function distutils/apiref.html
-Py_UNICODE_ISSPACE cfunction c-api/unicode.html
-turtle.screensize function library/turtle.html
-collections.deque.rotate method library/collections.html
-object.__iand__ method reference/datamodel.html
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-tkinter.ttk.Treeview.prev method library/tkinter.ttk.html
-ftplib.all_errors data library/ftplib.html
-errno.ENOTEMPTY data library/errno.html
-PyObject_HEAD cmacro c-api/structures.html
-PyCapsule_CheckExact cfunction c-api/capsule.html
-xml.dom.DomstringSizeErr exception library/xml.dom.html
-input function library/functions.html
-turtle.tilt function library/turtle.html
-tp_str cmember c-api/typeobj.html
-format function library/functions.html
-audioop.cross function library/audioop.html
-imaplib.IMAP4.noop method library/imaplib.html
-xml.sax.xmlreader.InputSource.setByteStream method library/xml.sax.reader.html
-PySequence_ITEM cfunction c-api/sequence.html
-multiprocessing.Pipe function library/multiprocessing.html
-imghdr.tests data library/imghdr.html
-mailcap.findmatch function library/mailcap.html
-email.mime.application.MIMEApplication class library/email.mime.html
-curses.ascii.ismeta function library/curses.ascii.html
-math.pi data library/math.html
-email.charset.Charset.input_charset attribute library/email.charset.html
-hashlib.hash.digest method library/hashlib.html
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-msilib.add_stream function library/msilib.html
-errno.ELIBMAX data library/errno.html
-ssl.SSLContext.verify_mode attribute library/ssl.html
-xml.dom.Node.appendChild method library/xml.dom.html
-tp_itemsize cmember c-api/typeobj.html
-xmlrpc.client.DateTime.encode method library/xmlrpc.client.html
-PyFloat_GetMin cfunction c-api/float.html
-inspect.getmodulename function library/inspect.html
-ftplib.FTP.nlst method library/ftplib.html
-xml.dom.HierarchyRequestErr exception library/xml.dom.html
-imaplib.Time2Internaldate function library/imaplib.html
-distutils.util.change_root function distutils/apiref.html
-xml.etree.ElementTree.Element.keys method library/xml.etree.elementtree.html
-turtle.forward function library/turtle.html
-curses.newwin function library/curses.html
-multiprocessing.Connection class library/multiprocessing.html
-textwrap.TextWrapper.initial_indent attribute library/textwrap.html
-tp_dealloc cmember c-api/typeobj.html
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-uuid.UUID.version attribute library/uuid.html
-curses.window.clear method library/curses.html
-os.dup2 function library/os.html
-multiprocessing.set_executable function library/multiprocessing.html
-multiprocessing.Connection.send method library/multiprocessing.html
-crypt.crypt function library/crypt.html
-tarfile.TarInfo.isdev method library/tarfile.html
-fcntl.flock function library/fcntl.html
-PyBuffer_Release cfunction c-api/buffer.html
-PyTuple_Size cfunction c-api/tuple.html
-turtle.stamp function library/turtle.html
-weakref.ReferenceError exception library/weakref.html
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-xml.dom.Document.createAttribute method library/xml.dom.html
-ftplib.FTP.storlines method library/ftplib.html
-curses.window.insnstr method library/curses.html
-fractions.Fraction class library/fractions.html
-PyDictProxy_New cfunction c-api/dict.html
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-PyDateTime_GET_MONTH cfunction c-api/datetime.html
-UnicodeError exception library/exceptions.html
-http.cookiejar.DefaultCookiePolicy.strict_domain attribute library/http.cookiejar.html
-tkinter.ttk.Treeview.identify_column method library/tkinter.ttk.html
-xml.dom.NotFoundErr exception library/xml.dom.html
-shlex.shlex.infile attribute library/shlex.html
-http.cookiejar.CookiePolicy.rfc2965 attribute library/http.cookiejar.html
-PyUnicode_Concat cfunction c-api/unicode.html
-compileall.compile_path function library/compileall.html
-os.WNOHANG data library/os.html
-sqlite3.Cursor.fetchmany method library/sqlite3.html
-logging.Logger.propagate attribute library/logging.html
-socket.socket.setblocking method library/socket.html
-multiprocessing.Connection.recv_bytes method library/multiprocessing.html
-ctypes.c_wchar_p class library/ctypes.html
-base64.encodebytes function library/base64.html
-errno.ELNRNG data library/errno.html
-xml.parsers.expat.xmlparser.ErrorColumnNumber attribute library/pyexpat.html
-os.kill function library/os.html
-tkinter.ttk.Treeview.identify_region method library/tkinter.ttk.html
-array.array.buffer_info method library/array.html
-os.path.splitunc function library/os.path.html
-dict.values method library/stdtypes.html
-sys.last_value data library/sys.html
-unittest.TestCase.addTypeEqualityFunc method library/unittest.html
-mailbox.MH.lock method library/mailbox.html
-PyThreadState_Clear cfunction c-api/init.html
-datetime.time.__str__ method library/datetime.html
-io.TextIOBase.write method library/io.html
-fractions.Fraction.limit_denominator method library/fractions.html
-curses.typeahead function library/curses.html
-PyBytes_GET_SIZE cfunction c-api/bytes.html
-email.utils.formataddr function library/email.util.html
-socket.socket.sendall method library/socket.html
-msilib.View.GetColumnInfo method library/msilib.html
-PyList_Type cvar c-api/list.html
-logging.FileHandler class library/logging.html
-datetime.datetime.time method library/datetime.html
-pickle.HIGHEST_PROTOCOL data library/pickle.html
-http.server.BaseHTTPRequestHandler.server attribute library/http.server.html
-test.support.is_resource_enabled function library/test.html
-slice function library/functions.html
-os.getenv function library/os.html
-zlib.Decompress.unused_data attribute library/zlib.html
-decimal.Context.Etiny method library/decimal.html
-errno.ENOTTY data library/errno.html
-datetime.date.year attribute library/datetime.html
-PyObject_DelAttr cfunction c-api/object.html
-shutil.copytree function library/shutil.html
-codecs.xmlcharrefreplace_errors function library/codecs.html
-email.message.Message.get_content_maintype method library/email.message.html
-http.server.BaseHTTPRequestHandler class library/http.server.html
-http.server.SimpleHTTPRequestHandler.extensions_map attribute library/http.server.html
-PySequence_Fast_GET_ITEM cfunction c-api/sequence.html
-PyLong_Check cfunction c-api/long.html
-http.cookies.Morsel.coded_value attribute library/http.cookies.html
-PyUnicode_InternFromString cfunction c-api/unicode.html
-os.O_SEQUENTIAL data library/os.html
-xml.sax.handler.ContentHandler.startPrefixMapping method library/xml.sax.handler.html
-http.cookies.BaseCookie.value_encode method library/http.cookies.html
-fileinput.isfirstline function library/fileinput.html
-PyUnicode_AsCharmapString cfunction c-api/unicode.html
-xml.dom.Element.setAttributeNS method library/xml.dom.html
-ctypes.FormatError function library/ctypes.html
-ossaudiodev.oss_audio_device.write method library/ossaudiodev.html
-xml.dom.Document.getElementsByTagName method library/xml.dom.html
-locale.CODESET data library/locale.html
-slice.indices method reference/datamodel.html
-shelve.Shelf class library/shelve.html
-errno.EREMOTE data library/errno.html
-os.EX_IOERR data library/os.html
-calendar.calendar function library/calendar.html
-distutils.dep_util.newer_pairwise function distutils/apiref.html
-doctest.DocTestFailure.got attribute library/doctest.html
-math.fsum function library/math.html
-operator.__xor__ function library/operator.html
-xml.dom.NoModificationAllowedErr exception library/xml.dom.html
-pprint.PrettyPrinter class library/pprint.html
-xmlrpc.server.CGIXMLRPCRequestHandler.register_function method library/xmlrpc.server.html
-array.array.itemsize attribute library/array.html
-PyInstanceMethod_Function cfunction c-api/method.html
-random.expovariate function library/random.html
-errno.ELOOP data library/errno.html
-xml.parsers.expat.xmlparser.GetInputContext method library/pyexpat.html
-winsound.Beep function library/winsound.html
-PyMarshal_WriteLongToFile cfunction c-api/marshal.html
-http.cookiejar.Cookie.expires attribute library/http.cookiejar.html
-ssl.OP_NO_TLSv1 data library/ssl.html
-threading.Condition.notify_all method library/threading.html
-len function library/functions.html
-xml.parsers.expat.xmlparser.specified_attributes attribute library/pyexpat.html
-curses.window.untouchwin method library/curses.html
-PyComplex_FromDoubles cfunction c-api/complex.html
-winreg.PyHKEY.Detach method library/winreg.html
-logging.captureWarnings function library/logging.html
-staticmethod function library/functions.html
-io.BufferedIOBase.read method library/io.html
-platform.processor function library/platform.html
-operator.__itruediv__ function library/operator.html
-imp.load_dynamic function library/imp.html
-array.typecodes data library/array.html
-PyFunction_GetGlobals cfunction c-api/function.html
-select.kevent.fflags attribute library/select.html
-os.defpath data library/os.html
-tarfile.TarInfo.isreg method library/tarfile.html
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-PyTuple_Type cvar c-api/tuple.html
-zip function library/functions.html
-PyLong_AsVoidPtr cfunction c-api/long.html
-decimal.Decimal.is_normal method library/decimal.html
-str.isdecimal method library/stdtypes.html
-object.__setattr__ method reference/datamodel.html
-array.array.reverse method library/array.html
-xmlrpc.server.SimpleXMLRPCServer.register_multicall_functions method library/xmlrpc.server.html
-html.parser.HTMLParser.handle_startendtag method library/html.parser.html
-imaplib.IMAP4.PROTOCOL_VERSION attribute library/imaplib.html
-KeyError exception library/exceptions.html
-unittest.TestCase.assertSetEqual method library/unittest.html
-winreg.EnumValue function library/winreg.html
-smtplib.SMTPResponseException exception library/smtplib.html
-email.message.Message.__contains__ method library/email.message.html
-PyModule_Type cvar c-api/module.html
-time.accept2dyear data library/time.html
-operator.ne function library/operator.html
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-difflib.Differ.compare method library/difflib.html
-PyLong_AsDouble cfunction c-api/long.html
-tarfile.TarInfo.name attribute library/tarfile.html
-email.charset.Charset.__eq__ method library/email.charset.html
-http.client.HTTPResponse.getheaders method library/http.client.html
-os.P_WAIT data library/os.html
-PyIter_Next cfunction c-api/iter.html
-locale.D_FMT data library/locale.html
-datetime.datetime.now classmethod library/datetime.html
-itertools.count function library/itertools.html
-csv.unregister_dialect function library/csv.html
-http.server.BaseHTTPRequestHandler.wfile attribute library/http.server.html
-xml.sax.xmlreader.AttributesImpl class library/xml.sax.reader.html
-sys.dont_write_bytecode data library/sys.html
-os.EX_USAGE data library/os.html
-threading.enumerate function library/threading.html
-curses.window.getparyx method library/curses.html
-sqlite3.enable_callback_tracebacks function library/sqlite3.html
-doctest.OutputChecker.output_difference method library/doctest.html
-tkinter.tix.CheckList class library/tkinter.tix.html
-winreg.REG_BINARY data library/winreg.html
-collections.Counter.update method library/collections.html
-zipfile.ZipInfo.filename attribute library/zipfile.html
-test.support.TESTFN data library/test.html
-inspect.iscode function library/inspect.html
-cmath.atan function library/cmath.html
-poplib.POP3.retr method library/poplib.html
-tp_descr_set cmember c-api/typeobj.html
-cmd.Cmd.use_rawinput attribute library/cmd.html
-os.path.normcase function library/os.path.html
-logging.Logger.findCaller method library/logging.html
-PyRun_SimpleFileExFlags cfunction c-api/veryhigh.html
-imp.C_BUILTIN data library/imp.html
-tkinter.ttk.Treeview.item method library/tkinter.ttk.html
-logging.FileHandler.close method library/logging.html
-ftplib.FTP.dir method library/ftplib.html
-optparse.OptionParser.add_option method library/optparse.html
-webbrowser.controller.open_new method library/webbrowser.html
-colorsys.hls_to_rgb function library/colorsys.html
-tkinter.ttk.Style.lookup method library/tkinter.ttk.html
-logging.FileHandler.emit method library/logging.html
-Py_GetProgramFullPath cfunction c-api/init.html
-ctypes.c_int class library/ctypes.html
-unittest.TestResult.shouldStop attribute library/unittest.html
-tp_iter cmember c-api/typeobj.html
-msilib.Control.condition method library/msilib.html
-curses.putp function library/curses.html
-xmlrpc.server.SimpleXMLRPCRequestHandler.rpc_paths attribute library/xmlrpc.server.html
-decimal.Context.subtract method library/decimal.html
-parser.ParserError exception library/parser.html
-PyVarObject_HEAD_INIT cmacro c-api/structures.html
-mailbox.Message class library/mailbox.html
-errno.ENOSPC data library/errno.html
-codecs.EncodedFile function library/codecs.html
-PyList_Reverse cfunction c-api/list.html
-xml.dom.Node.previousSibling attribute library/xml.dom.html
-argparse.ArgumentParser.parse_known_args method library/argparse.html
-pprint.PrettyPrinter.isrecursive method library/pprint.html
-msilib.gen_uuid function library/msilib.html
-cgi.FieldStorage.getfirst method library/cgi.html
-shelve.open function library/shelve.html
-operator.attrgetter function library/operator.html
-PyException_SetContext cfunction c-api/exceptions.html
-logging.Logger.handle method library/logging.html
-time.ctime function library/time.html
-email.generator.Generator.clone method library/email.generator.html
-PyDict_Contains cfunction c-api/dict.html
-symtable.SymbolTable.get_name method library/symtable.html
-PyTime_Check cfunction c-api/datetime.html
-PySet_Pop cfunction c-api/set.html
-datetime.date.fromtimestamp classmethod library/datetime.html
-urllib.request.Request.add_data method library/urllib.request.html
-imp.NullImporter.find_module method library/imp.html
-msvcrt.LK_RLCK data library/msvcrt.html
-formatter.NullFormatter class library/formatter.html
-socket.socket.accept method library/socket.html
-type function library/functions.html
-io.BufferedIOBase.write method library/io.html
-re.match function library/re.html
-stat.S_IREAD data library/stat.html
-importlib.util.set_package function library/importlib.html
-xml.etree.ElementTree.Element.getchildren method library/xml.etree.elementtree.html
-PyTrace_CALL cvar c-api/init.html
-wave.Wave_read.getmarkers method library/wave.html
-turtle.register_shape function library/turtle.html
-xml.sax.handler.ContentHandler.characters method library/xml.sax.handler.html
-xml.dom.NodeList.item method library/xml.dom.html
-http.cookiejar.FileCookieJar.load method library/http.cookiejar.html
-mailbox.Maildir class library/mailbox.html
-os.WIFSTOPPED function library/os.html
-ArithmeticError exception library/exceptions.html
-errno.EDEADLOCK data library/errno.html
-PyType_IS_GC cfunction c-api/type.html
-signal.CTRL_BREAK_EVENT data library/signal.html
-os.O_NOFOLLOW data library/os.html
-audioop.add function library/audioop.html
-PyWeakref_NewProxy cfunction c-api/weakref.html
-telnetlib.Telnet.mt_interact method library/telnetlib.html
-codecs.StreamReader.readlines method library/codecs.html
-bisect.bisect_left function library/bisect.html
-imaplib.IMAP4.sort method library/imaplib.html
-os.O_DIRECT data library/os.html
-PyLong_AsUnsignedLongLongMask cfunction c-api/long.html
-tarfile.ExtractError exception library/tarfile.html
-turtle.getshapes function library/turtle.html
-socket.AF_INET6 data library/socket.html
-gettext.install function library/gettext.html
-PyNumber_Long cfunction c-api/number.html
-imaplib.IMAP4.rename method library/imaplib.html
-xml.dom.InuseAttributeErr exception library/xml.dom.html
-turtle.shape function library/turtle.html
-importlib.import_module function library/importlib.html
-logging.handlers.SysLogHandler.mapPriority method library/logging.html
-ctypes.c_bool class library/ctypes.html
-os.EX_OSFILE data library/os.html