Ubuntu
trinityrnaseq package

ubuntu/+source/trinityrnaseq:applied/ubuntu/groovy-proposed

  1. Git
  2. lp:ubuntu/+source/trinityrnaseq
  3. applied/ubuntu/groovy-proposed
Last commit made on 2020-04-28
Get this branch:
git clone -b applied/ubuntu/groovy-proposed https://git.launchpad.net/ubuntu/+source/trinityrnaseq
Members of git-ubuntu import can upload to this branch. Log in for directions.

Branch merges

Branch information

Name:
applied/ubuntu/groovy-proposed
Repository:
lp:ubuntu/+source/trinityrnaseq

Recent commits

6fc6008... by Michael R. Crusoe

2.10.0+dfsg-1 (patches applied)

Imported using git-ubuntu import.

dc504c6... by Michael R. Crusoe

skip tests with a dependency on blat

Gbp-Pq: skip_blat.

8ab0cdc... by Michael R. Crusoe

skip tests with a dependency on r-bioc-dexseq

Gbp-Pq: skip_r-bioc-dexseq.

484688b... by Michael R. Crusoe

skip tests with a dependency on r-cran-argparse

Gbp-Pq: skip_r-cran-argpase.

7db6f6f... by Michael R. Crusoe

Enable better use of sub-make

Gbp-Pq: submake.

2e43b39... by Michael R. Crusoe

r-bioc-tximportdata is 400MiB+ package

Gbp-Pq: skip_tximportData_tests.

25fdc2f... by Michael R. Crusoe

Skip tests that require GATK4 until it gets packaged

Gbp-Pq: skip_gatk_test.

df79421... by Michael R. Crusoe

Add LDFALGS CPPFLAGS and unshadw CFALGS for seqtk-trinity-0.0.2

Gbp-Pq: seqtk-trinity-hardening.

8c03199... by Michael R. Crusoe

add standard CXXFLAGS CPPFLAGS to Chrysalis & scaffold_iworm_contigs

Gbp-Pq: hardening.

9441fb8... by Michael R. Crusoe

Don't hardcode number of --CPU (especially above 2)

Gbp-Pq: unfix_num_of_cores.