Ubuntu
bowtie package

ubuntu/+source/bowtie:applied/debian/jessie

  1. Git
  2. lp:ubuntu/+source/bowtie
  3. applied/debian/jessie
Last commit made on 2015-02-03
Get this branch:
git clone -b applied/debian/jessie https://git.launchpad.net/ubuntu/+source/bowtie
Members of git-ubuntu import can upload to this branch. Log in for directions.

Branch merges

Branch information

Name:
applied/debian/jessie
Repository:
lp:ubuntu/+source/bowtie

Recent commits

4bd5e0e... by Charles Plessy

1.1.1-2 (patches applied)

Imported using git-ubuntu import.

2245242... by Charles Plessy

Change class name of _Context_LSS

Gbp-Pq: bowtie_ContextLss-1.1-1.4.patch.

1f16f9c... by Charles Plessy

Use SeqAn 1.4's seqan::popCount() function instead of own function

Gbp-Pq: seqan-popcount.patch.

28ab5c7... by Charles Plessy

Disable -Wl,--hash-style=both on mips machines.

Gbp-Pq: no_hash_style_both_for_mips.patch.

2624312... by Charles Plessy

Disable architecture bits detection.

Gbp-Pq: disable_bits_flag.patch.

0b27fcd... by Charles Plessy

Renamed seqan::fill function calls to use seqan::resize.

Gbp-Pq: seqan-rename-fill-to-resize.patch.

e449dbf... by Charles Plessy

Renamed ChunkPool class to bowtieChunkPool.

Gbp-Pq: seqan-rename-ChunkPool.patch.

7768a11... by Charles Plessy

Proper type-casting in using seqan::_setBegin().

Gbp-Pq: seqan-fix-setBegin-call.patch.

cc28c1f... by Charles Plessy

Use Debian packaged SeqAn library instead of copy in upstream source

Gbp-Pq: use_debian_seqan.patch.

6eeb515... by Charles Plessy

Use build flags from environment (dpkg-buildflags).

Gbp-Pq: use-dpkg-buildflags.patch.