Ubuntu
bioperl-run package

ubuntu/+source/bioperl-run:applied/ubuntu/groovy

  1. Git
  2. lp:ubuntu/+source/bioperl-run
  3. applied/ubuntu/groovy
Last commit made on 2020-04-01
Get this branch:
git clone -b applied/ubuntu/groovy https://git.launchpad.net/ubuntu/+source/bioperl-run
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Branch merges

Branch information

Name:
applied/ubuntu/groovy
Repository:
lp:ubuntu/+source/bioperl-run

Recent commits

1c208cb... by Pranav Ballaney <email address hidden>

1.7.3-4 (patches applied)

Imported using git-ubuntu import.

3872b3f... by Pranav Ballaney <email address hidden>

Somehow these tests are failing - no idea why

Gbp-Pq: skip_tests_for_soap.patch.

6fd2871... by Pranav Ballaney <email address hidden>

For some reason Ensembl.t test is executed in autopkgtest run even

Gbp-Pq: remove_tests_for_ensembl.patch.

cf538d9... by Pranav Ballaney <email address hidden>

Hyphy

Gbp-Pq: hyphy.patch.

f636b84... by Pranav Ballaney <email address hidden>

Somehow tests are excluded automatically - adjust expected number of tests

Gbp-Pq: skip_tests_for_ncbi-blast+.patch.

676e3d9... by Pranav Ballaney <email address hidden>

Exclude some failed test when using muscle. Seems Debian's muscle is newer

Gbp-Pq: skip_tests_for_muscle.patch.

632f590... by Pranav Ballaney <email address hidden>

A lot of tests need to be skipped. BioPerl is spoorting only old infernal interface

Gbp-Pq: skip_tests_for_infernal.patch.

5e1b0c1... by Pranav Ballaney <email address hidden>

Somehow there are issues to initialise openmpi, but beside these warnings there are also errors

Gbp-Pq: skip_tests_for_phyml.patch.

2111aa4... by Pranav Ballaney <email address hidden>

No idea why the number of tests is 8 instead of 9

Gbp-Pq: skip_tests_for_phylip.patch.

57c9d5f... by Pranav Ballaney <email address hidden>

Possibly incompatible wise versions - ignore these tests

Gbp-Pq: skip_tests_for_wise.patch.