Ubuntu
bioperl-run package

ubuntu/+source/bioperl-run:applied/ubuntu/focal

  1. Git
  2. lp:ubuntu/+source/bioperl-run
  3. applied/ubuntu/focal
Last commit made on 2020-01-13
Get this branch:
git clone -b applied/ubuntu/focal https://git.launchpad.net/ubuntu/+source/bioperl-run
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Branch merges

Branch information

Name:
applied/ubuntu/focal
Repository:
lp:ubuntu/+source/bioperl-run

Recent commits

3019da8... by Michael R. Crusoe

1.7.3-3 (patches applied)

Imported using git-ubuntu import.

6e7a484... by Michael R. Crusoe

Somehow these tests are failing - no idea why

Gbp-Pq: skip_tests_for_soap.patch.

020bcd7... by Michael R. Crusoe

For some reason Ensembl.t test is executed in autopkgtest run even

Gbp-Pq: remove_tests_for_ensembl.patch.

567487e... by Michael R. Crusoe

Hyphy

Gbp-Pq: hyphy.patch.

e97abf8... by Michael R. Crusoe

Somehow tests are excluded automatically - adjust expected number of tests

Gbp-Pq: skip_tests_for_ncbi-blast+.patch.

cf2d670... by Michael R. Crusoe

Exclude some failed test when using muscle. Seems Debian's muscle is newer

Gbp-Pq: skip_tests_for_muscle.patch.

7499815... by Michael R. Crusoe

A lot of tests need to be skipped. BioPerl is spoorting only old infernal interface

Gbp-Pq: skip_tests_for_infernal.patch.

582d128... by Michael R. Crusoe

Somehow there are issues to initialise openmpi, but beside these warnings there are also errors

Gbp-Pq: skip_tests_for_phyml.patch.

f5073d0... by Michael R. Crusoe

No idea why the number of tests is 8 instead of 9

Gbp-Pq: skip_tests_for_phylip.patch.

f9e3378... by Michael R. Crusoe

Possibly incompatible wise versions - ignore these tests

Gbp-Pq: skip_tests_for_wise.patch.