Ubuntu
bioperl-run package

ubuntu/+source/bioperl-run:applied/ubuntu/disco

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  2. lp:ubuntu/+source/bioperl-run
  3. applied/ubuntu/disco
Last commit made on 2018-09-14
Get this branch:
git clone -b applied/ubuntu/disco https://git.launchpad.net/ubuntu/+source/bioperl-run
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Branch merges

Branch information

Name:
applied/ubuntu/disco
Repository:
lp:ubuntu/+source/bioperl-run

Recent commits

79fba8f... by Andreas Tille

1.7.2-4 (patches applied)

Imported using git-ubuntu import.

a364a98... by Andreas Tille

Do not try to run bowtie tests with wrong bowtie call

Gbp-Pq: fix_bowtie_call.patch.

b6915af... by Andreas Tille

For some reason Ensembl.t test is executed in autopkgtest run even

Gbp-Pq: remove_tests_for_ensembl.patch.

15f4df3... by Andreas Tille

Hyphy

Gbp-Pq: hyphy.patch.

7dd7fea... by Andreas Tille

Hmmmm, seems one contig less is detected - no idea why

Gbp-Pq: skip_tests_for_maq.patch.

4505108... by Andreas Tille

Somehow tests are excluded automatically - adjust expected number of tests

Gbp-Pq: skip_tests_for_ncbi-blast+.patch.

48ce820... by Andreas Tille

Exclude some failed test when using muscle. Seems Debian's muscle is newer

Gbp-Pq: skip_tests_for_muscle.patch.

91e5c65... by Andreas Tille

A lot of tests need to be skipped. BioPerl is spoorting only old infernal interface

Gbp-Pq: skip_tests_for_infernal.patch.

d5b0c7f... by Andreas Tille

Exclude three failed tests of bowtie

Gbp-Pq: skip_tests_for_bowtie.patch.

ed063b6... by Andreas Tille

Somehow there are issues to initialise openmpi, but beside these warnings there are also errors

Gbp-Pq: skip_tests_for_phyml.patch.