Ubuntu
bioperl-run package

ubuntu/+source/bioperl-run:applied/ubuntu/cosmic

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  2. lp:ubuntu/+source/bioperl-run
  3. applied/ubuntu/cosmic
Last commit made on 2018-01-26
Get this branch:
git clone -b applied/ubuntu/cosmic https://git.launchpad.net/ubuntu/+source/bioperl-run
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Branch merges

Branch information

Name:
applied/ubuntu/cosmic
Repository:
lp:ubuntu/+source/bioperl-run

Recent commits

17b7233... by Alex

1.7.2-3 (patches applied)

Imported using git-ubuntu import.

ac014a2... by Alex

Do not try to run bowtie tests with wrong bowtie call

Gbp-Pq: fix_bowtie_call.patch.

b8d1bc9... by Alex

For some reason Ensembl.t test is executed in autopkgtest run even

Gbp-Pq: remove_tests_for_ensembl.patch.

eccaa29... by Alex

Hyphy

Gbp-Pq: hyphy.patch.

dc397dc... by Alex

Hmmmm, seems one contig less is detected - no idea why

Gbp-Pq: skip_tests_for_maq.patch.

1bd0efc... by Alex

Somehow tests are excluded automatically - adjust expected number of tests

Gbp-Pq: skip_tests_for_ncbi-blast+.patch.

8f5d11e... by Alex

Exclude some failed test when using muscle. Seems Debian's muscle is newer

Gbp-Pq: skip_tests_for_muscle.patch.

eba4f88... by Alex

A lot of tests need to be skipped. BioPerl is spoorting only old infernal interface

Gbp-Pq: skip_tests_for_infernal.patch.

ac5245f... by Alex

Exclude three failed tests of bowtie

Gbp-Pq: skip_tests_for_bowtie.patch.

e6e72fb... by Alex

Somehow there are issues to initialise openmpi, but beside these warnings there are also errors

Gbp-Pq: skip_tests_for_phyml.patch.