Ubuntu
bioperl-run package

ubuntu/+source/bioperl-run:applied/debian/bullseye

  1. Git
  2. lp:ubuntu/+source/bioperl-run
  3. applied/debian/bullseye
Last commit made on 2021-01-07
Get this branch:
git clone -b applied/debian/bullseye https://git.launchpad.net/ubuntu/+source/bioperl-run
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Branch merges

Branch information

Name:
applied/debian/bullseye
Repository:
lp:ubuntu/+source/bioperl-run

Recent commits

da8ac9a... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

1.7.3-6 (patches applied)

Imported using git-ubuntu import.

ccc58d1... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

skip last Kalign test

Gbp-Pq: skip-test-for-kalign.patch.

03528e7... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

use alternate rmsk dataset

Gbp-Pq: alternate-data.patch.

45b4e3b... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

change mapping of bedtools subcommand overlap

Gbp-Pq: get-overlap.patch.

3551e69... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

Somehow these tests are failing - no idea why

Gbp-Pq: skip_tests_for_soap.patch.

147b035... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

For some reason Ensembl.t test is executed in autopkgtest run even

Gbp-Pq: remove_tests_for_ensembl.patch.

0270431... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

Hyphy

Gbp-Pq: hyphy.patch.

afbdedd... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

Somehow tests are excluded automatically - adjust expected number of tests

Gbp-Pq: skip_tests_for_ncbi-blast+.patch.

f1fb448... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

Exclude some failed test when using muscle. Seems Debian's muscle is newer

Gbp-Pq: skip_tests_for_muscle.patch.

9919354... by =?utf-8?q?=C3=89tienne_Mollier?= <email address hidden>

A lot of tests need to be skipped. BioPerl is spoorting only old infernal interface

Gbp-Pq: skip_tests_for_infernal.patch.