Ubuntu
ariba package

ubuntu/+source/ariba:applied/ubuntu/lunar-devel

  1. Git
  2. lp:ubuntu/+source/ariba
  3. applied/ubuntu/lunar-devel
Last commit made on 2023-03-15
Get this branch:
git clone -b applied/ubuntu/lunar-devel https://git.launchpad.net/ubuntu/+source/ariba
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Branch merges

Branch information

Name:
applied/ubuntu/lunar-devel
Repository:
lp:ubuntu/+source/ariba

Recent commits

77f961b... by Graham Inggs

2.14.6+ds-5build1 (patches applied)

Imported using git-ubuntu import.

eba2d49... by Graham Inggs

skip tests failing with new bowtie2

Gbp-Pq: adjust-bowtie2-test.patch.

29268f4... by Graham Inggs

skip tests using dataset from older samtools mpileup

Gbp-Pq: skip-cluster-test.patch.

453ae39... by Graham Inggs

move to bcftools 1.16 mpileup

Gbp-Pq: mpileup-1.16.patch.

8bf9a61... by Graham Inggs

Switch from nose -> pytest as the former is deprecated

Gbp-Pq: port-to-pytest.patch.

456493a... by Graham Inggs

run Debian SPAdes wrapper

Gbp-Pq: run-debian-spades-wrapper.patch.

491cc6c... by Graham Inggs

adapt test cases for new PyMUMmer version

Gbp-Pq: support-pymummer-0.11.patch.

34d7139... by Graham Inggs

disable tests that need Internet access

Gbp-Pq: disable-tests-with-internet-access.patch.

66898e6... by Graham Inggs

include testdata in package

Gbp-Pq: add-testdata.patch.

447f4a3... by Graham Inggs

Adapt to fermi-lite which does not conflict with bwa

Gbp-Pq: use_bwa_compatible_fermi-lite.patch.