FEniCS Plasticity

Merge lp:fenics-plasticity into lp:~als88/fenics-plasticity/plasticity_with_local_size

  1. dev
  2. Merge into plasticity_with_local_size
Proposed by Antony Siahaan
Status: Needs review
Proposed branch: lp:fenics-plasticity
Merge into: lp:~als88/fenics-plasticity/plasticity_with_local_size
Diff against target: 93431 lines (+92541/-42)
104 files modified
CMakeLists.txt (+0/-2)
demo/2Dsimple/2Dlinear_QE/main.cpp (+1/-2)
demo/2Dsimple/2Dquadratic_QE/main.cpp (+1/-1)
src/CMakeLists.txt (+5/-0)
src/GradPlasProblem.cpp (+2/-1)
src/GradPlasProblem.h (+2/-3)
src/IPData.cpp (+6/-1)
src/IPData.h (+5/-2)
src/LiftingAssembler.cpp (+8/-5)
src/LiftingAssembler.h (+4/-12)
src/LiftingFunction.cpp (+7/-5)
src/LiftingTerm.cpp (+2/-2)
src/PlasticityProblem.cpp (+2/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000000.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000001.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000002.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000003.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000004.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000005.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000006.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000007.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000008.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000000.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000001.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000002.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000003.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000004.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000005.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000006.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000007.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain000008.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000000.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000001.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000002.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000003.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000004.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000005.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000006.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000007.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dlinear_QE/eq_plas_strain_disc000008.ref.vtu (+616/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000000.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000001.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000002.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000003.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000004.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000005.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000006.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000007.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/disp000008.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000000.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000001.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000002.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000003.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000004.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000005.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000006.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000007.ref.vtu (+569/-0)
test/verify_demos/references/2Dsimple/2Dquadratic_QE/eq_plas_strain000008.ref.vtu (+569/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000000.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000001.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000002.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000003.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000004.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000005.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000006.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000007.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/disp000008.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000000.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000001.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000002.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000003.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000004.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000005.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000006.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000007.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain000008.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000000.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000001.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000002.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000003.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000004.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000005.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000006.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000007.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dlinear_QE/eq_plas_strain_disc000008.ref.vtu (+1684/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000000.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000001.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000002.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000003.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000004.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000005.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000006.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000007.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/disp000008.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000000.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000001.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000002.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000003.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000004.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000005.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000006.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000007.ref.vtu (+1425/-0)
test/verify_demos/references/3Dsimple/3Dquadratic_QE/eq_plas_strain000008.ref.vtu (+1425/-0)
test/verify_demos/test.py (+12/-6)
To merge this branch: bzr merge lp:fenics-plasticity
Reviewer Review Type Date Requested Status
Garth Wells (community) Disapprove
Review via email: mp+153260@code.launchpad.net

Commit message

MPI is now working in fenics-plasticity.

Description of the change

Change in IPData.cpp and IPData.h to enable parallel execution :
- using local_size() method instead of size() method for vector object.
- using get_local() method instead of gather() method for vector object.

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Revision history for this message
Garth Wells (garth-wells) wrote :

Merge request is in wrong direction.

Should be into trunk.

Garth

On 13 Mar 2013, at 23:38, Antony Siahaan <email address hidden> wrote:

> Antony Siahaan has proposed merging lp:fenics-plasticity into lp:~als88/fenics-plasticity/plasticity_with_local_size.
>
> Commit message:
> MPI is now working in fenics-plasticity.
>
> Requested reviews:
> Garth Wells (garth-wells)
>
> For more details, see:
> https://code.launchpad.net/~fenics-plasticity/fenics-plasticity/dev/+merge/153260
>
> Change in IPData.cpp and IPData.h to enable parallel execution :
> - using local_size() method instead of size() method for vector object.
> - using get_local() method instead of gather() method for vector object.
>
>
> --
> https://code.launchpad.net/~fenics-plasticity/fenics-plasticity/dev/+merge/153260
> You are requested to review the proposed merge of lp:fenics-plasticity into lp:~als88/fenics-plasticity/plasticity_with_local_size.

Reply
Revision history for this message
Garth Wells (garth-wells) :
review: Disapprove
Reply
lp:fenics-plasticity updated
109. By Garth Wells

Merge fixes to get runnung in parallel.

110. By Garth Wells

Updates for UFC changes.

111. By Garth Wells

Update mesh object name. Results look strange.

112. By Garth Wells

Merge parallel fix

113. By Garth Wells

Remove some debug output

114. By Garth Wells

Quick build hack for OSX

115. By Kristian B. Ølgaard

Enable testing again, results are wrong for quadratic forms. It looks like a problem with reordering the dofs.

Unmerged revisions

115. By Kristian B. Ølgaard

Enable testing again, results are wrong for quadratic forms. It looks like a problem with reordering the dofs.

114. By Garth Wells

Quick build hack for OSX

113. By Garth Wells

Remove some debug output

112. By Garth Wells

Merge parallel fix

111. By Garth Wells

Update mesh object name. Results look strange.

110. By Garth Wells

Updates for UFC changes.

109. By Garth Wells

Merge fixes to get runnung in parallel.

Preview Diff

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1=== modified file 'CMakeLists.txt'
2--- CMakeLists.txt 2013-02-26 11:23:48 +0000
3+++ CMakeLists.txt 2013-04-05 07:52:25 +0000
4@@ -15,8 +15,6 @@
5 #------------------------------------------------------------------------------
6 # General configuration
7
8-message("**** Tesing ${fenics-plasticity_SOURCE_DIR}")
9-
10 # Set CMake options, see `cmake --help-policy CMP000x`
11 if (COMMAND cmake_policy)
12 cmake_policy(SET CMP0003 NEW)
13
14=== modified file 'demo/2Dsimple/2Dlinear_QE/main.cpp'
15--- demo/2Dsimple/2Dlinear_QE/main.cpp 2011-12-06 22:28:42 +0000
16+++ demo/2Dsimple/2Dlinear_QE/main.cpp 2013-04-05 07:52:25 +0000
17@@ -60,8 +60,7 @@
18 int main()
19 {
20 // Simple mesh
21- UnitSquare mesh(8, 8);
22-// UnitSquare mesh(64, 64);
23+ UnitSquareMesh mesh(8, 8);
24
25 // Young's modulus and Poisson's ratio
26 double E = 20000.0;
27
28=== modified file 'demo/2Dsimple/2Dquadratic_QE/main.cpp'
29--- demo/2Dsimple/2Dquadratic_QE/main.cpp 2013-02-26 11:27:40 +0000
30+++ demo/2Dsimple/2Dquadratic_QE/main.cpp 2013-04-05 07:52:25 +0000
31@@ -59,7 +59,7 @@
32 int main()
33 {
34 // Simple mesh
35- UnitSquareMesh mesh(32, 32);
36+ UnitSquareMesh mesh(8, 8);
37
38 // Young's modulus and Poisson's ratio
39 double E = 20000.0;
40
41=== modified file 'src/CMakeLists.txt'
42--- src/CMakeLists.txt 2012-12-30 14:07:03 +0000
43+++ src/CMakeLists.txt 2013-04-05 07:52:25 +0000
44@@ -24,6 +24,11 @@
45 # Link to DOLFIN library
46 target_link_libraries(fenics-plasticity ${DOLFIN_LIBRARIES})
47
48+# BLAS/LAPACK on OSX. Should get from DOLFIN CMake config file.
49+if (APPLE)
50+ set(CMAKE_SHARED_LINKER_FLAGS "-framework vecLib")
51+endif()
52+
53 #------------------------------------------------------------------------------
54 # Install header files
55 install(DIRECTORY ./ DESTINATION include/fenics-plasticity FILES_MATCHING PATTERN "*.h")
56
57=== modified file 'src/GradPlasProblem.cpp'
58--- src/GradPlasProblem.cpp 2013-02-26 11:20:02 +0000
59+++ src/GradPlasProblem.cpp 2013-04-05 07:52:25 +0000
60@@ -4,6 +4,7 @@
61 // First added: 2008-11-07
62 // Last changed: 2012-07-17
63
64+#include <dolfin/fem/DirichletBC.h>
65 #include <dolfin/la/solve.h>
66 #include <dolfin/mesh/Facet.h>
67 #include "GradPlasProblem.h"
68@@ -24,7 +25,7 @@
69 dolfin::Function& tangent,
70 dolfin::Function& proj_func,
71 dolfin::Function& G,
72- std::vector<const dolfin::BoundaryCondition*>& bcs,
73+ std::vector<const dolfin::DirichletBC*>& bcs,
74 double E, double nu,
75 LiftingAssembler* lift_assembler_lhs_,
76 LiftingAssembler* lift_assembler_rhs_,
77
78=== modified file 'src/GradPlasProblem.h'
79--- src/GradPlasProblem.h 2012-12-30 12:20:58 +0000
80+++ src/GradPlasProblem.h 2013-04-05 07:52:25 +0000
81@@ -10,7 +10,6 @@
82 #include <vector>
83 #include <dolfin/fem/Assembler.h>
84 #include <dolfin/fem/Form.h>
85-#include <dolfin/fem/BoundaryCondition.h>
86 #include <dolfin/function/Function.h>
87 #include <dolfin/nls/NonlinearProblem.h>
88 #include <dolfin/la/Matrix.h>
89@@ -45,7 +44,7 @@
90 dolfin::Function& tangent,
91 dolfin::Function& proj_func,
92 dolfin::Function& G,
93- std::vector<const dolfin::BoundaryCondition*>& bcs,
94+ std::vector<const dolfin::DirichletBC*>& bcs,
95 double E, double nu,
96 LiftingAssembler* lift_assembler_lhs_=0,
97 LiftingAssembler* lift_assembler_rhs_=0,
98@@ -80,7 +79,7 @@
99 dolfin::Form& L_Avg; // RHS to compute average of lambda space quantities.
100
101 // Boundary conditions
102- std::vector<const dolfin::BoundaryCondition*>& bcs;
103+ std::vector<const dolfin::DirichletBC*>& bcs;
104
105 // Vector of RHS Function for form that computes projection of lambda and
106 // yield function element averages.
107
108=== modified file 'src/IPData.cpp'
109--- src/IPData.cpp 2013-03-04 13:06:28 +0000
110+++ src/IPData.cpp 2013-04-05 07:52:25 +0000
111@@ -166,7 +166,7 @@
112 dolfin::error("Only 2D and 3D is supported");
113 }
114 //-----------------------------------------------------------------------------
115-StrainData::StrainData(const dolfin::Function& U, const dolfin::FunctionSpace& Q) :
116+StrainData::StrainData(dolfin::Function& U, const dolfin::FunctionSpace& Q) :
117 _u_comp_elem(*U[0].function_space()->element()),
118 _u_dofmap(*U.function_space()->dofmap()),
119 _q_dofmap(*Q[0]->dofmap()),
120@@ -194,6 +194,11 @@
121 {
122 delete [] _derivatives;
123 }
124+
125+void StrainData::update_ghost_disp()
126+{
127+ _vector.update_ghost_values();
128+}
129 //-----------------------------------------------------------------------------
130 void StrainData::update(const dolfin::Cell& cell)
131 {
132
133=== modified file 'src/IPData.h'
134--- src/IPData.h 2013-03-04 13:06:28 +0000
135+++ src/IPData.h 2013-04-05 07:52:25 +0000
136@@ -142,11 +142,14 @@
137 public:
138
139 /// Constructor
140- StrainData(const dolfin::Function& U, const dolfin::FunctionSpace& Q);
141+ StrainData(dolfin::Function& U, const dolfin::FunctionSpace& Q);
142
143 /// Destructor
144 ~StrainData();
145
146+
147+ void update_ghost_disp();
148+
149 // Update ip coordinates and expansion coefficients for displacement
150 // function for given cell.
151 void update(const dolfin::Cell& cell);
152@@ -167,7 +170,7 @@
153 const dolfin::GenericDofMap& _q_dofmap;
154
155 // Vector of expansion coefficients
156- const dolfin::GenericVector& _vector;
157+ dolfin::GenericVector& _vector;
158
159 // Number of integration points
160 unsigned int _num_ip;
161
162=== modified file 'src/LiftingAssembler.cpp'
163--- src/LiftingAssembler.cpp 2013-02-26 11:20:02 +0000
164+++ src/LiftingAssembler.cpp 2013-04-05 07:52:25 +0000
165@@ -22,7 +22,6 @@
166
167 using namespace fenicsplas;
168
169-
170 //-----------------------------------------------------------------------------
171 LiftingAssembler::LiftingAssembler(std::vector<LiftingTerm*>& terms)
172 {
173@@ -113,7 +112,7 @@
174 coefficients[i]->update();
175
176 // Initialize global tensor
177- LiftingAssembler::init_global_tensor(A, a, ufc, reset_sparsity);
178+ AssemblerBase::init_global_tensor(A, a);
179
180 // Assemble over cells
181 assemble_cells(A, a, ufc, cell_domains, 0);
182@@ -192,7 +191,7 @@
183 dofs[i] = &(dof_maps[i]->cell_dofs(cell->index()));
184
185 // Tabulate cell tensor
186- integral->tabulate_tensor(&ufc.A[0], ufc.w(), ufc.cell);
187+ integral->tabulate_tensor(&ufc.A[0], ufc.w(), &ufc.cell.vertex_coordinates[0], ufc.cell.orientation);
188
189 // Add entries to global tensor. Either store values cell-by-cell
190 // (currently only available for functionals)
191@@ -278,7 +277,7 @@
192 dofs[i] = &(dof_maps[i]->cell_dofs(mesh_cell.index()));
193
194 // Tabulate exterior facet tensor
195- integral->tabulate_tensor(&ufc.A[0], ufc.w(), ufc.cell, local_facet);
196+ integral->tabulate_tensor(&ufc.A[0], ufc.w(), ufc.cell.vertex_coordinates.data(), local_facet);
197
198 // Add entries to global tensor
199 A.add(&ufc.A[0], dofs);
200@@ -383,7 +382,9 @@
201 }
202
203 // Tabulate exterior interior facet tensor on macro element
204- integral->tabulate_tensor(&ufc.macro_A[0], ufc.macro_w(), ufc.cell0, ufc.cell1,
205+ integral->tabulate_tensor(ufc.macro_A.data(), ufc.macro_w(),
206+ ufc.cell0.vertex_coordinates.data(),
207+ ufc.cell1.vertex_coordinates.data(),
208 local_facet0, local_facet1);
209
210 // Add entries to global tensor
211@@ -404,6 +405,7 @@
212 _terms[i]->integrate_term(A, cell_domains, facet_domains);
213 }
214 //-----------------------------------------------------------------------------
215+/*
216 void LiftingAssembler::init_global_tensor(dolfin::GenericTensor& A,
217 const dolfin::Form& a,
218 dolfin::UFC& ufc, bool reset_sparsity)
219@@ -438,6 +440,7 @@
220 else
221 A.zero();
222 }
223+*/
224 //------------------------------------------------------------------------------
225 void LiftingAssembler::build_sparsity_pattern(dolfin::GenericSparsityPattern& sparsity_pattern,
226 const dolfin::Mesh& mesh, const std::vector<const dolfin::GenericDofMap*> dof_maps) const
227
228=== modified file 'src/LiftingAssembler.h'
229--- src/LiftingAssembler.h 2012-12-30 12:20:58 +0000
230+++ src/LiftingAssembler.h 2013-04-05 07:52:25 +0000
231@@ -18,14 +18,6 @@
232 namespace fenicsplas
233 {
234
235-// class GenericTensor;
236-// class GenericDofMap;
237-// class GenericSparsityPattern;
238-// class Form;
239-// class Mesh;
240-// class SubDomain;
241-// class UFC;
242-// template<class T> class MeshFunction;
243
244 /// This class provides automated assembly of linear systems, or
245 /// more generally, assembly of a sparse tensor from a given
246@@ -94,10 +86,10 @@
247 const dolfin::MeshFunction<std::size_t>* facet_domains);
248
249 // Initialize global tensor
250- void init_global_tensor(dolfin::GenericTensor& A,
251- const dolfin::Form& a,
252- dolfin::UFC& data,
253- bool reset_sparsity);
254+ //void init_global_tensor(dolfin::GenericTensor& A,
255+ // const dolfin::Form& a,
256+ // dolfin::UFC& data,
257+ // bool reset_sparsity);
258
259 // Build the sparsity pattern
260 void build_sparsity_pattern(dolfin::GenericSparsityPattern& sparsity_pattern,
261
262=== modified file 'src/LiftingFunction.cpp'
263--- src/LiftingFunction.cpp 2013-02-07 19:03:26 +0000
264+++ src/LiftingFunction.cpp 2013-04-05 07:52:25 +0000
265@@ -106,7 +106,9 @@
266
267 // Tabulate macro tensor for interior facet integral,
268 // dot(avg(v(LIFT)), jump(u(ELEM)))*dS
269- facet_integral->tabulate_tensor(&ufc_e.macro_A[0], ufc_e.macro_w(), ufc_e.cell0, ufc_e.cell1, facet0, facet1);
270+ facet_integral->tabulate_tensor(ufc_e.macro_A.data(), ufc_e.macro_w(),
271+ ufc_e.cell0.vertex_coordinates.data(),
272+ ufc_e.cell1.vertex_coordinates.data(), facet0, facet1);
273
274 // Get dimension of tensor for mass and facet integral (a macro tensor for interior facets)
275 mi_dim = dof_maps_m[0]->cell_dimension(cell0.index()) + dof_maps_m[0]->cell_dimension(cell1.index());
276@@ -137,13 +139,13 @@
277 const std::size_t m_j = dof_maps_m[1]->cell_dimension(ufc_m.cell0.index);
278
279 // Tabulate upper left part of macro mass matrix.
280- cell_integral->tabulate_tensor(&ufc_m.A[0], ufc_m.w(), ufc_m.cell0);
281+ cell_integral->tabulate_tensor(&ufc_m.A[0], ufc_m.w(), ufc_m.cell0.vertex_coordinates.data(), ufc_m.cell0.orientation);
282 for (std::size_t i = 0; i < m_i; ++i)
283 for (std::size_t j = 0; j < m_j; ++j)
284 mass_m(i, j) = ufc_m.A[i*m_j + j];
285
286 // Tabulate lower right part of macro mass matrix
287- cell_integral->tabulate_tensor(&ufc_m.A[0], ufc_m.w(), ufc_m.cell1);
288+ cell_integral->tabulate_tensor(&ufc_m.A[0], ufc_m.w(), ufc_m.cell1.vertex_coordinates.data(), ufc_m.cell1.orientation);
289 for (std::size_t i = 0; i < m_i; ++i)
290 for (std::size_t j = 0; j < m_j; ++j)
291 mass_m(i + m_i, j + m_j) = ufc_m.A[i*m_j + j];
292@@ -158,8 +160,8 @@
293 facet_integral = ufc_e.get_exterior_facet_integral((*facet_domains)[facet]);
294
295 // Tabulate facet and mass matrix.
296- facet_integral->tabulate_tensor(&ufc_e.A[0], ufc_e.w(), ufc_e.cell, local_facet);
297- cell_integral->tabulate_tensor(&ufc_m.A[0], ufc_m.w(), ufc_m.cell);
298+ facet_integral->tabulate_tensor(&ufc_e.A[0], ufc_e.w(), ufc_e.cell.vertex_coordinates.data(), local_facet);
299+ cell_integral->tabulate_tensor(&ufc_m.A[0], ufc_m.w(), ufc_m.cell.vertex_coordinates.data(), ufc_m.cell.orientation);
300
301 // Fill facet and mass tensors with values from integrals.
302 for (std::size_t i = 0; i < r_dim; ++i)
303
304=== modified file 'src/LiftingTerm.cpp'
305--- src/LiftingTerm.cpp 2013-02-07 19:03:26 +0000
306+++ src/LiftingTerm.cpp 2013-04-05 07:52:25 +0000
307@@ -142,7 +142,7 @@
308 dofs[i] = &(lift_form.function_space(i)->dofmap()->cell_dofs(cell.index()));
309
310 // Tabulate integral.
311- integral->tabulate_tensor(&lift_ufc.A[0], lift_ufc.w(), lift_ufc.cell);
312+ integral->tabulate_tensor(&lift_ufc.A[0], lift_ufc.w(), &lift_ufc.cell.vertex_coordinates[0], lift_ufc.cell.orientation);
313
314 const std::size_t l_i = lift_form.function_space(0)->dofmap()->cell_dimension(cell.index());
315 // If the form is linear, l_j = 1 i.e., assembling into a vector.
316@@ -331,7 +331,7 @@
317 dofs[i] = &(lift_form.function_space(i)->dofmap()->cell_dofs(cell.index()));
318
319 // Tabulate integral
320- integral->tabulate_tensor(&lift_ufc.A[0], lift_ufc.w(), lift_ufc.cell);
321+ integral->tabulate_tensor(&lift_ufc.A[0], lift_ufc.w(), &lift_ufc.cell.vertex_coordinates[0], lift_ufc.cell.orientation);
322
323 const std::size_t l_i = lift_form.function_space(0)->dofmap()->cell_dimension(cell.index());
324 // If the facet form is linear, l_j = 1 i.e., assembling into a vector.
325
326=== modified file 'src/PlasticityProblem.cpp'
327--- src/PlasticityProblem.cpp 2013-02-26 11:20:02 +0000
328+++ src/PlasticityProblem.cpp 2013-04-05 07:52:25 +0000
329@@ -76,6 +76,8 @@
330 // Elastic tangent
331 const arma::mat& elastic_tangent = plastic_model.elastic_tangent;
332
333+ strain_data.update_ghost_disp();
334+
335 // Zero local ip data
336 cons_tangent.zeros();
337 trial_stress.zeros();
338
339=== added directory 'test/verify_demos/references'
340=== added directory 'test/verify_demos/references/2Dsimple'
341=== added directory 'test/verify_demos/references/2Dsimple/2Dlinear_QE'
342=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000000.ref.vtu'
343--- test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000000.ref.vtu 1970-01-01 00:00:00 +0000
344+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000000.ref.vtu 2013-04-05 07:52:25 +0000
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916
917=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000001.ref.vtu'
918--- test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000001.ref.vtu 1970-01-01 00:00:00 +0000
919+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000001.ref.vtu 2013-04-05 07:52:25 +0000
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1491
1492=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000002.ref.vtu'
1493--- test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000002.ref.vtu 1970-01-01 00:00:00 +0000
1494+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000002.ref.vtu 2013-04-05 07:52:25 +0000
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2066
2067=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000003.ref.vtu'
2068--- test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000003.ref.vtu 1970-01-01 00:00:00 +0000
2069+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000003.ref.vtu 2013-04-05 07:52:25 +0000
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2641
2642=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000004.ref.vtu'
2643--- test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000004.ref.vtu 1970-01-01 00:00:00 +0000
2644+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000004.ref.vtu 2013-04-05 07:52:25 +0000
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3792=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000006.ref.vtu'
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4366
4367=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000007.ref.vtu'
4368--- test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000007.ref.vtu 1970-01-01 00:00:00 +0000
4369+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000007.ref.vtu 2013-04-05 07:52:25 +0000
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4942=== added file 'test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000008.ref.vtu'
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4944+++ test/verify_demos/references/2Dsimple/2Dlinear_QE/disp000008.ref.vtu 2013-04-05 07:52:25 +0000
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