Merge ~enr0n/autopkgtest-cloud:mdanalysis into autopkgtest-cloud:master

[Nick Rosbrook]

[Nick Rosbrook (enr0n)]

I verified the tests pass locally on amd64 with "qemu --ram-size=8192 --cpus=4".

Unmerged commits

47a4f3c... by Nick Rosbrook on 2022-02-17

add mdanalysis to big_packages

4482b08... by Brian Murray on 2022-02-17

Merge remote-tracking branch 'alexghiti/int/alex/shasta'

eb70b15... by Alexandre Ghiti on 2022-02-16

Revert "Add shasta to big_packages"

This reverts commit 3bb688a3cdffa54f3ba0f0dc91ca9c8d98e8eef6.

The big_packages configuration is actually not enough for the test that
this package runs, we then disabled it. As the rest of the testsuite does not
need to be run on a large configuration, revert this patch.

15af1d0... by Michael Hudson-Doyle on 2022-02-14

add libaio/ppc64el to big_packages

3bb688a... by Alexandre Ghiti on 2022-02-11

Add shasta to big_packages

001a6f9... by Steve Langasek on 2022-02-10

Add python3.{9,10}/ppc64el to big_packages

fe1114b... by Lukas Märdian on 2022-02-04

Add link-grammar to big_packages

74c5ce6... by Steve Langasek on 2022-01-03

Add benchmark to big packages

c842fb8... by Steve Langasek on 2021-12-13

skimage in big packages now on all archs (s390x)

a43c9cb... by Steve Langasek on 2021-12-13

Add gnudatalanguage to big_packages

diff --git a/README.md b/README.md
index 75a195d..f45f758 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,4 @@
+<<<<<<< README.md
 autopkgtest-cloud
 =================
 
@@ -9,3 +10,36 @@ delivering their results.
 
 See docs/ or [our readthedocs page](https://autopkgtest-cloud.readthedocs.io)
 for the complete documentation for developers and admins of autopkgtest-cloud.
+=======
+# autopkgtest-cloud per-package overrides
+
+## Intro
+
+This repository contains three files which control how tests for specific
+packages are run. It is consumed by autopkgtest-cloud automatically.
+
+## Syntax
+
+The syntax of all files is the same: `sourcepackage/arch/release`.
+`sourcepackage` is mandatory. The other two can be omitted or be the special
+string `all`, which means apply to all architectures/releases.
+
+Lines beginning with a `#` are treated as comments and ignored.
+
+## big_packages
+
+Entries here run on the `package_size_big` Openstack flavour as opposed to the
+`package_size_default` one. That means this is only meaningful for packages
+which run on Openstack (not `lxd`).
+
+## long_tests
+
+Entries here get a longer timeout, currently defined in the code of
+`autopkgtest-cloud`.
+
+## never_run
+
+Entries here are never run. A worker which encounters one of these will
+acknowledge the job and upload a log file which says that the job was
+skipped.
+>>>>>>> README.md
diff --git a/big_packages b/big_packages
new file mode 100644
index 0000000..18d2705
--- /dev/null
+++ b/big_packages
@@ -0,0 +1,406 @@
+akonadi/amd64
+akonadi/arm64
+akonadi/armhf
+akonadi/i386
+akonadi/ppc64el
+akonadi/s390x
+androguard/amd64
+androguard/arm64
+androguard/armhf
+androguard/i386
+androguard/ppc64el
+androguard/s390x
+assimp/amd64
+assimp/i386
+benchmark/amd64
+benchmark/arm64
+benchmark/armhf
+benchmark/ppc64el
+benchmark/s390x
+binutils/amd64
+binutils/arm64
+binutils/armhf
+binutils/i386
+binutils/ppc64el
+binutils/s390x
+botch/amd64
+botch/arm64
+botch/armhf
+botch/i386
+botch/ppc64el
+botch/s390x
+camitk/amd64
+camitk/arm64
+camitk/armhf
+camitk/i386
+camitk/ppc64el
+camitk/s390x
+celery/amd64
+celery/arm64
+celery/armhf
+celery/ppc64el
+celery/s390x
+chromium-browser/amd64
+chromium-browser/arm64
+chromium-browser/armhf
+chromium-browser/i386
+chromium-browser/ppc64el
+chromium-browser/s390x
+cl-ironclad/amd64
+cl-ironclad/arm64
+cl-ironclad/i386
+cod-tools/ppc64el
+cross-toolchain-base-mipsen/amd64
+cross-toolchain-base-mipsen/i386
+cross-toolchain-base/ppc64el
+cwltool/arm64
+cwltool/ppc64el
+dask/amd64
+dask/arm64
+dask/armhf
+dask/i386
+dask/ppc64el
+dask/s390x
+deal.ii/amd64
+deal.ii/arm64
+deal.ii/i386
+deal.ii/ppc64el
+deal.ii/s390x
+delve/amd64
+delve/arm64
+dolfin/amd64
+dolfin/arm64
+dolfin/i386
+dolfin/ppc64el
+dolfin/s390x
+dolfinx/amd64
+dolfinx/arm64
+dolfinx/i386
+dolfinx/ppc64el
+dolfinx/s390x
+einsteinpy/amd64
+einsteinpy/ppc64el
+firefox/amd64
+firefox/arm64
+firefox/armhf
+firefox/i386
+firefox/ppc64el
+firefox/s390x
+ganeti/amd64
+ganeti/arm64
+ganeti/armhf
+ganeti/i386
+ganeti/ppc64el
+ganeti/s390x
+glibc/amd64
+glibc/arm64
+glibc/armhf
+glibc/i386
+glibc/ppc64el
+glibc/s390x
+gnudatalanguage/amd64
+gnudatalanguage/arm64
+gscan2pdf/arm64
+heat-dashboard/armhf
+ipyparallel/ppc64el
+julia/amd64
+julia/arm64
+julia/armhf
+julia/i386
+julia/ppc64el
+julia/s390x
+kineticstools/amd64
+kineticstools/arm64
+kineticstools/armhf
+kineticstools/i386
+kineticstools/ppc64el
+kineticstools/s390x
+libaio/ppc64el
+libflame/amd64
+libflame/arm64
+libflame/i386
+libflame/ppc64el
+libflame/s390x
+libreoffice/amd64
+libreoffice/arm64
+libreoffice/armhf
+libreoffice/i386
+libreoffice/ppc64el
+libreoffice/s390x
+libsis-jhdf5-java/amd64
+libsis-jhdf5-java/i386
+libsis-jhdf5-java/ppc64el
+libtext-bidi-perl/amd64
+libtext-bidi-perl/arm64
+libtext-bidi-perl/armhf
+libtext-bidi-perl/i386
+libtext-bidi-perl/ppc64el
+libtext-bidi-perl/s390x
+link-grammar/amd64
+link-grammar/arm64
+link-grammar/ppc64el
+link-grammar/s390x
+lintian/arm64
+linux-*/amd64
+linux-*/arm64
+linux-*/armhf
+linux-*/i386
+linux-*/ppc64el
+linux-*/s390x
+linux/amd64
+linux/arm64
+linux/armhf
+linux/i386
+linux/ppc64el
+linux/s390x
+lttng-modules/amd64
+lttng-modules/arm64
+lttng-modules/armhf
+lttng-modules/i386
+lttng-modules/ppc64el
+lttng-modules/s390x
+makedumpfile/ppc64el
+mariadb-10.3/amd64
+mariadb-10.3/i386
+mariadb-10.5/amd64
+mariadb-10.5/i386
+mathicgb/amd64
+mathicgb/arm64
+mathicgb/armhf
+mathicgb/i386
+mathicgb/ppc64el
+mathicgb/s390x
+mdanalysis/amd64
+mdanalysis/arm64
+mdanalysis/ppc64el
+mdanalysis/s390x
+meson/amd64
+meson/arm64
+meson/i386
+meson/ppc64el
+meson/s390x
+mkl-dnn/amd64
+mkl-dnn/i386
+multipath-tools/amd64
+multipath-tools/arm64
+multipath-tools/i386
+multipath-tools/ppc64el
+multipath-tools/s390x
+mysql-8.0/arm64
+mysql-connector-c++/s390x
+node-immutable-tuple/arm64
+node-redis/arm64
+nodejs/amd64
+nodejs/i386
+nova/amd64
+nova/arm64
+nova/armhf
+nova/i386
+nova/ppc64el
+nova/s390x
+octave-parallel/amd64
+octave-parallel/arm64
+octave-parallel/i386
+octave-parallel/ppc64el
+octave-parallel/s390x
+openjdk-13/amd64
+openjdk-13/i386
+openjdk-13/ppc64el
+openjdk-13/s390x
+openjdk-14/amd64
+openjdk-14/i386
+openjdk-14/ppc64el
+openjdk-14/s390x
+openjdk-8/amd64
+openjdk-8/arm64
+openjdk-8/armhf
+openjdk-8/i386
+openjdk-8/ppc64el
+openjdk-8/s390x
+openjdk-lts/amd64
+openjdk-lts/arm64
+openjdk-lts/armhf
+openjdk-lts/i386
+openjdk-lts/ppc64el
+openjdk-lts/s390x
+openmolcas/amd64
+openmolcas/arm64
+openmolcas/ppc64el
+openmolcas/s390x
+opensaml/amd64
+opensaml/arm64
+pandas/ppc64el
+petsc4py/arm64
+petsc4py/ppc64el
+puma/amd64
+puma/armhf
+puma/i386
+puma/ppc64el
+pyfai/amd64
+pyfai/arm64
+pyfai/i386
+pyfai/ppc64el
+pyfai/s390x
+pyopencl/amd64
+pyresample/amd64
+pyresample/arm64
+pyresample/i386
+pyresample/ppc64el
+pyresample/s390x
+python-cffi/amd64
+python-cffi/arm64
+python-cffi/armhf
+python-cffi/i386
+python-cffi/ppc64el
+python-cffi/s390x
+python-cryptography/amd64
+python-cryptography/arm64
+python-cryptography/i386
+python-cryptography/ppc64el
+python-cryptography/s390x
+python-dmsh/amd64
+python-dmsh/arm64
+python-dmsh/i386
+python-dmsh/ppc64el
+python-dmsh/s390x
+python-hypothesis/amd64
+python-hypothesis/arm64
+python-hypothesis/armhf
+python-hypothesis/i386
+python-hypothesis/ppc64el
+python-hypothesis/s390x
+python-ruffus/amd64
+python-ruffus/arm64
+python-ruffus/armhf
+python-ruffus/i386
+python-ruffus/ppc64el
+python-ruffus/s390x
+python-scipy/amd64
+python-scipy/i386
+python2.7/amd64
+python2.7/i386
+python3.6/amd64
+python3.6/i386
+python3.7/amd64
+python3.7/i386
+python3.8/amd64
+python3.8/i386
+python3.9/ppc64el
+python3.10/ppc64el
+q2-feature-classifier/amd64
+q2-feature-classifier/arm64
+q2-feature-classifier/i386
+q2-feature-classifier/ppc64el
+q2-feature-classifier/s390x
+qutip/amd64
+r-bioc-beachmat/amd64
+r-bioc-beachmat/arm64
+r-bioc-beachmat/i386
+r-bioc-beachmat/ppc64el
+r-bioc-beachmat/s390x
+r-bioc-biocsingular/arm64
+r-bioc-biocsingular/s390x
+r-bioc-metagenomeseq/amd64
+r-bioc-metagenomeseq/arm64
+r-bioc-metagenomeseq/i386
+r-bioc-metagenomeseq/ppc64el
+r-bioc-metagenomeseq/s390x
+r-bioc-scuttle/amd64
+r-bioc-scuttle/arm64
+r-bioc-scuttle/i386
+r-bioc-scuttle/ppc64el
+r-bioc-scuttle/s390x
+r-bioc-sva/amd64
+r-bioc-sva/arm64
+r-bioc-sva/i386
+r-bioc-sva/ppc64el
+r-bioc-sva/s390x
+r-bioc-variantannotation/amd64
+r-bioc-variantannotation/arm64
+r-bioc-variantannotation/i386
+r-bioc-variantannotation/ppc64el
+r-bioc-variantannotation/s390x
+r-cran-epi/amd64
+r-cran-epi/arm64
+r-cran-epi/armhf
+r-cran-epi/i386
+r-cran-epi/ppc64el
+r-cran-epi/s390x
+r-cran-future/amd64
+r-cran-future/arm64
+r-cran-future/armhf
+r-cran-future/i386
+r-cran-future/ppc64el
+r-cran-future/s390x
+r-cran-igraph/amd64
+r-cran-igraph/arm64
+r-cran-igraph/armhf
+r-cran-igraph/i386
+r-cran-igraph/ppc64el
+r-cran-igraph/s390x
+rocs/amd64
+rocs/arm64
+rocs/armhf
+rocs/i386
+rocs/ppc64el
+rocs/s390x
+samtools/amd64
+samtools/arm64
+samtools/armhf
+samtools/i386
+samtools/ppc64el
+samtools/s390x
+satpy/amd64
+satpy/arm64
+satpy/armhf
+satpy/i386
+satpy/ppc64el
+satpy/s390x
+sbcl/amd64
+sbcl/arm64
+scikit-learn/amd64
+scikit-learn/armhf
+scikit-learn/i386
+scipy/amd64
+scipy/arm64
+scipy/i386
+scipy/ppc64el
+scipy/s390x
+silx/amd64
+silx/armhf
+silx/i386
+skimage/amd64
+skimage/arm64
+skimage/armhf
+skimage/i386
+skimage/ppc64el
+skimage/s390x
+statsmodels/amd64
+statsmodels/armhf
+statsmodels/i386
+systemd/amd64
+tdb/amd64
+tdb/arm64
+tdb/armhf
+tdb/i386
+tdb/ppc64el
+tdb/s390x
+tgt/amd64
+tgt/arm64
+tgt/i386
+tgt/ppc64el
+tgt/s390x
+toil/amd64
+toil/arm64
+toil/armhf
+toil/i386
+toil/ppc64el
+toil/s390x
+xtensor/amd64
+xtensor/ppc64el
+yt/amd64
+yt/arm64
+yt/armhf
+yt/i386
+yt/ppc64el
+yt/s390x
diff --git a/long_tests b/long_tests
new file mode 100644
index 0000000..4abadf3
--- /dev/null
+++ b/long_tests
@@ -0,0 +1,67 @@
+automake-1.16/arm64
+automake-1.16/armhf
+cross-toolchain-base/amd64
+cross-toolchain-base/arm64
+cross-toolchain-base/armhf
+cross-toolchain-base/i386
+cross-toolchain-base/ppc64el
+cross-toolchain-base/s390x
+diffoscope/amd64
+diffoscope/arm64
+diffoscope/armhf
+diffoscope/i386
+diffoscope/ppc64el
+diffoscope/s390x
+epson-inkjet-printer-escpr/arm64
+epson-inkjet-printer-escpr/armhf
+glibc/arm64
+glibc/armhf
+gmp-ecm/amd64
+gmp-ecm/arm64
+gmp-ecm/armhf
+gmp-ecm/i386
+gmp-ecm/ppc64el
+gmp-ecm/s390x
+gutenprint/amd64
+gutenprint/arm64
+gutenprint/armhf
+gutenprint/i386
+gutenprint/ppc64el
+gutenprint/s390x
+haveged/arm64
+haveged/armhf
+lintian/arm64
+linux-hwe-5.0/armhf
+linux-hwe-5.4/armhf
+mercurial/amd64
+mercurial/armhf
+mercurial/i386
+open-iscsi/amd64
+open-iscsi/arm64
+open-iscsi/armhf
+open-iscsi/i386
+open-iscsi/ppc64el
+open-iscsi/s390x
+openjdk-8/armhf
+pandas/armhf
+salt/arm64
+salt/armhf
+simde/armhf
+snapcraft/amd64
+snapcraft/arm64
+snapcraft/armhf
+snapcraft/i386
+snapcraft/ppc64el
+snapcraft/s390x
+snapd/arm64
+snapd/armhf
+snapd/ppc64el
+snapd/s390x
+sshuttle/amd64
+sshuttle/arm64
+sshuttle/armhf
+sshuttle/i386
+sshuttle/ppc64el
+sshuttle/s390x
+systemd-upstream/ppc64el
+systemd/ppc64el
diff --git a/never_run b/never_run
new file mode 100644
index 0000000..324c16f
--- /dev/null
+++ b/never_run
@@ -0,0 +1,60 @@
+debuerreotype/arm64/hirsute
+debuerreotype/ppc64el/hirsute
+debuerreotype/s390x/hirsute
+libnih/amd64/bionic
+libnih/arm64/bionic
+libnih/armhf/artful
+libnih/armhf/bionic
+libnih/armhf/xenial
+libnih/i386/bionic
+libnih/ppc64el/bionic
+libnih/s390x/bionic
+openjdk-13/arm64/focal
+openjdk-13/arm64/groovy
+openjdk-13/arm64/hirsute
+openjdk-13/armhf/focal
+openjdk-13/armhf/groovy
+openjdk-13/armhf/hirsute
+openjdk-14/arm64/focal
+openjdk-14/arm64/groovy
+openjdk-14/arm64/hirsute
+openjdk-14/armhf/focal
+openjdk-14/armhf/groovy
+openjdk-14/armhf/hirsute
+openjdk-lts/arm64/bionic
+openjdk-lts/arm64/focal
+openjdk-lts/arm64/groovy
+openjdk-lts/arm64/hirsute
+openjdk-lts/armhf/bionic
+openjdk-lts/armhf/hirsute
+openjdk-lts/i386/bionic
+openjdk-lts/ppc64el/bionic
+openjdk-lts/s390x/bionic
+r-cran-vioplot/amd64/bionic
+r-cran-vioplot/arm64/bionic
+r-cran-vioplot/armhf/bionic
+r-cran-vioplot/i386/bionic
+r-cran-vioplot/ppc64el/bionic
+r-cran-vioplot/s390x/bionic
+stress-ng/amd64/bionic
+stress-ng/arm64/bionic
+stress-ng/i386/bionic
+stress-ng/ppc64el/bionic
+stress-ng/s390x/bionic
+upstart/amd64/bionic
+upstart/arm64/bionic
+upstart/i386/bionic
+upstart/ppc64el/bionic
+upstart/s390x/bionic
+virtualbox-ext-pack/amd64/bionic
+virtualbox-ext-pack/amd64/xenial
+virtualbox-ext-pack/arm64/bionic
+virtualbox-ext-pack/arm64/xenial
+virtualbox-ext-pack/armhf/bionic
+virtualbox-ext-pack/armhf/xenial
+virtualbox-ext-pack/i386/bionic
+virtualbox-ext-pack/i386/xenial
+virtualbox-ext-pack/ppc64el/bionic
+virtualbox-ext-pack/ppc64el/xenial
+virtualbox-ext-pack/s390x/bionic
+virtualbox-ext-pack/s390x/xenial
\ No newline at end of file