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236. By David Murphy <email address hidden> on 2019-03-20

Update from @monolith

*** New methods:

*** Updated methods/modules:

- Fixed bugs relating to running with a grid file, as well as the merging process. Instructions updated

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

235. By David Murphy <email address hidden> on 2019-02-22

Update from @monolith

*** New methods:

*** Updated methods/modules:

- fixed more python bugs when running the test ATLAS/GAMA G23 field

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

234. By David Murphy <email address hidden> on 2019-02-21

Update from @monolith

*** New methods:

*** Updated methods/modules:

- fixed python bugs, now runs to completion for test data

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

233. By David Murphy, CASU <email address hidden> on 2017-10-11

Update from @monolith

*** New methods:

*** Updated methods/modules:

- parallel_qhull.qhullv2(): improved bounding box implementation

- parallel_detect.parallel_detect(): set bounding default to ENABLED! Will need to be disabled via cfg override

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

232. By David Murphy, CASU <email address hidden> on 2017-08-16

Update from @monolith

*** New methods:
- detections.to_aladin(): transmits detection class to an Aladin instance via SAMP

*** Updated methods/modules:

- galaxies.__init__(): fix calculating flux (set to zero) for NaN magnitudes when using permit_dropouts
- detections.accelerate(): fix to ignore a permit_dropouts sanity check when the depth_mod (mag_mod) is used
  (problems with same detection class hosting clusters from different CMR selections due to changing mag limits)

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

231. By David Murphy <<email address hidden> on 2017-07-13

Update from @laptop (Durham visit v2)

*** New methods:

*** Updated methods/modules:
-cluster.cmr(): more handling of NaNs for permit_dropouts

-cluster.match(): handles "None" return where cm20 calculation is not
 possible (again, permit_dropouts)

-cluster.rotate(): m,c --> c,m bug fix

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

230. By David Murphy, CASU <email address hidden> on 2017-07-11

Update from @monolith

*** New methods:

*** Updated methods/modules:

-detection.cmr(): Fix to handle NaNs when calculating colour
 distribution for spread in colour (for exploration in 2nd colour)

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

229. By David Murphy, CASU <email address hidden> on 2017-06-19

Update from @monolith

*** New methods:

*** Updated methods/modules:

- pp.py was missing from lib - re-added, hopefully will solve import issues.

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

228. By David Murphy <<email address hidden> on 2017-06-15

Update from @laptop (Durham visit)

*** New methods:

-clusters.get_colours_mags(): a convenience function that returns the
colours and magnitudes of the galaxies, filtering out any NaN that may
arise from using the multi_survey=True flag.

-detections.to_vstcutouts(): output the cluster positions in the
 format used to generate cutout images from Chile

*** Updated methods/modules:
-cluster.print_info(): SDSS url updated to DR12

-dataIO.getData(): added "permit dropouts" implementation (previously
 "multi_survey") that should allow inhomogeneous input photometry -
 ie, where a galaxy can have unmeasured flux in one (or more) bands.

-detection.accelerate(): properly implemented "permit dropouts", to
 allow the survival of clusters through into the 2nd detection stage
 if they stand no chance of being selected due to missing galaxy magnitudes.

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)

227. By David Murphy on 2016-03-07

Update from @monolith

*** New methods:

*** Updated methods/modules:
-detection.to_fits(): fixed stupid keyname contamination where galcat_extras variables are adopted for cluster objects

***Known/Unresolved issues:

- implement improved controlled-exception raising for run() in detect_rapid()

- additional vertices are often replicated for no reason in galaxies.vertex_list.verts. This may disappear
  from this release onwards, but will monitor.

- interaction.py: Needs to know about basis colours for getGalaxyCMR, cross clicking in panel (CMR-(RA,DEC)) broken
                  plot_bcg and plot_centre flags should be integrated in interaction environment

- detections.py/tools.py: excess nesting of chooser grid data in source grids for DR7 (stripes?) re-generate and remove
                          caveats that have had to be applied (keeping std-out messages for reference...)