sga

lp:stringgraphassembler

Created by Michael R. Crusoe and last modified
Get this branch:
bzr branch lp:stringgraphassembler

Related bugs

Related blueprints

Branch information

Owner:
Debian Med
Project:
sga
Status:
Development

Import details

Import Status: Failed

This branch is an import of the HEAD branch of the Git repository at git://anonscm.debian.org/debian-med/sga.git.

The import has been suspended because it failed 5 or more times in succession.

Last successful import was .

Import started on russkaya and finished taking 20 seconds — see the log
Import started on galapagos and finished taking 40 seconds — see the log
Import started on galapagos and finished taking 40 seconds — see the log
Import started on pear and finished taking 15 seconds — see the log

Recent revisions

906. By Michael R. Crusoe

Remove extra reference to upstream's paper

905. By Andreas Tille

Enabling Vcs fields

904. By Michael R. Crusoe

initial debianization

903. By Jared Simpson <email address hidden>

v0.9.35

902. By Jared Simpson <email address hidden>

Implemented an upper limit on the number of edges we allow a vertex to have before giving up on using it in the assembly graph.

This helps limit the memory usage in pathological cases, like when the genome contains a lot of satellite DNA.

901. By Jared Simpson <email address hidden>

When building the FM-index using ropebwt the lexicographic index is built using openmp if the compiler supports it.

900. By Jared Simpson <email address hidden>

github issue 14: sga index should exit gracefully when the input file is empty.

899. By Jared Simpson <email address hidden>

github issue 26: Removed references to old --quality-scale parameter

898. By Jared Simpson <email address hidden>

github issue 27: added --no-primer-check option to preprocess. Also, cleaned up help message.

897. By Jared Simpson <email address hidden>

github issue 25: implement writing orphaned pairs to a file during preprocess

Branch metadata

Branch format:
Branch format 7
Repository format:
Bazaar repository format 2a (needs bzr 1.16 or later)
This branch contains Public information 
Everyone can see this information.

Subscribers