Binary package “topp” in ubuntu lunar
set of programs implementing The OpenMS Proteomic Pipeline
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibra
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
Source package
Published versions
- topp 2.6.0+cleaned1-3build3 in amd64 (Proposed)
- topp 2.6.0+cleaned1-3build3 in amd64 (Release)
- topp 2.6.0+cleaned1-3build3 in arm64 (Proposed)
- topp 2.6.0+cleaned1-3build3 in arm64 (Release)
- topp 2.6.0+cleaned1-3build3 in ppc64el (Proposed)
- topp 2.6.0+cleaned1-3build3 in ppc64el (Release)
- topp 2.6.0+cleaned1-3build3 in riscv64 (Proposed)
- topp 2.6.0+cleaned1-3build3 in riscv64 (Release)
- topp 2.6.0+cleaned1-3build3 in s390x (Proposed)
- topp 2.6.0+cleaned1-3build3 in s390x (Release)