python3-pairtools-examples 0.3.0-3.2build1 (amd64 binary) in ubuntu kinetic
Simple and fast command-line framework to process sequencing data from a Hi-C
experiment.
.
Process pair-end sequence alignments and perform the following operations:
.
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
.
This package contains some examples
Details
- Package version:
- 0.3.0-3.2build1
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of pairtools 0.3.0-3.2build1 in ubuntu jammy PROPOSED produced
these files:
Package relationships
- Enhances: