Branches for Intrepid

Author: Charles Plessy
Revision Date: 2008-07-02 11:24:48 UTC

[ David Paleino ]
* Updated to Standards-Version 3.8.0 (no changes needed)

[ Charles Plessy ]
* New upstream release (Closes: #479323)
  Quoting the upstream changelog:
  o Modified exonerate to work in Client:Server mode
  o Fixed --refine to work with SDP alignments
  o Disabled codegen warnings from bootstrapper during compilation
  o Added --geneticcode option for using alternative genetic codes
  o Added --splice5 and --splice3 to allow alternative splice site PSSMs
  o Fixed several bugs when scanning query sequences (eg. --forcescan query)
  o Fixed to report query on forward strand whenever possible.
  o Fixed --ryo sequence dumping with --bestn
  o Fixed a bug with missing seeds when using --annotation
  o Changed license to GPLv3
  o Added protein2dna:bestfit and protein2genome:bestfit models
    (works with exhaustive alignment only)
* Updated my email address.
* debian/control:
  - Building on glib-2.0 instead of 1.2.
  - Added a build dependancy on libreadline5-dev.
  - Augmented the long description and changed the short.
  - Added a build dependency on CDBS.
* debian/copyright made machine-readable.
* debian/rules switched to cdbs.
* debian/dirs: removed.