Ubuntu
zlib package

  1. Bug #1961427
  2. Comment #17

Comment 17 for bug 1961427

Revision history for this message
bugproxy (bugproxy) wrote : Comment bridged from LTC Bugzilla

------- Comment From <email address hidden> 2022-05-06 06:22 EDT-------
Here are the originally reported failures:

> But I found in "bedtools":
> bedtools: bgzf.c:351: bgzf_hopen: Assertion
> `compressBound(BGZF_BLOCK_SIZE) < BGZF_MAX_BLOCK_SIZE' failed. test-
> intersect.sh: line 201: 1981 Aborted (core dumped)
> $htsutil samtobam one_block.sam one_block.bam
>
> or in libbio:
> perl: bgzf.c:142: bgzf_open: Assertion
> `compressBound(BGZF_BLOCK_SIZE) < BGZF_MAX_BLOCK_SIZE' failed.Failed
> 268/268 subtests

I just double-checked, and apparently bedtools bundles htslib (under src/utils/htslib). I didn't check libbio, but most likely it does this as well. So the patch must be cherry-picked into all of the bundled copies.