Ubuntu
t-coffee package

t-coffee 9.03.r1318-1 source package in Ubuntu

Changelog

t-coffee (9.03.r1318-1) unstable; urgency=low


  * New upstream release.

  [ Tim Booth ]
  * Removed the -doc package as it is empty (Closes: #688630).
    docs are no longer in tarball but online:
     http://www.tcoffee.org/Projects/tcoffee/#DOCUMENTATION
  * Rejigged the rules file to use DH, not CDBS 
  * Avoid compressing files under t-coffee-examples
  * Remove TMalign binary on clean (should avoid building it at all)
  * Fix minor typo flagged by Lintian

  [ Charles Plessy ]
  * Normalised debian/control with config-model-edit.
  * Normalised VCS URLs.
  * Using Debhelper 9.
  * Complies with Policy 3.9.4.

  [Andreas Tille]
  * debian/upstream: Single Reference field instead of Reference-*

 -- Charles Plessy <email address hidden>  Sun, 14 Jul 2013 19:03:20 +0900

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section

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File Size SHA-256 Checksum
t-coffee_9.03.r1318-1.dsc 2.1 KiB 685381a3a2b2bc703a181ec8c6874bb0dc1b712164ef7d332b0a95e116db8b7a
t-coffee_9.03.r1318.orig.tar.gz 3.3 MiB 5bb9a531a4036b741a8ff0fe19f3591a3f33bf7ac4f484e5329b1b5dd1fff43c
t-coffee_9.03.r1318-1.debian.tar.gz 7.4 KiB 23abe4b749b8841de67ba87e367bff560e0d2bfd9a2bd1ab017fa340048a0134

Available diffs

No changes file available.

Binary packages built by this source

t-coffee: Multiple Sequence Alignment

 T-Coffee is a multiple sequence alignment package. Given a set of
 sequences (Proteins or DNA), T-Coffee generates a multiple sequence
 alignment. Version 2.00 and higher can mix sequences and structures.
 .
 T-Coffee allows the combination of a collection of multiple/pairwise,
 global or local alignments into a single model. It can also
 estimate the level of consistency of each position within the new
 alignment with the rest of the alignments. See the pre-print for more
 information
 .
 T-Coffee has a special called M-Coffee that makes it possible to combine the
 output of many multiple sequence alignment packages. In its published version,
 it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
 T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
 only free software by replacing Clustal W by Kalign. Using the 8 Methods of
 M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
 methods if you prefer.

t-coffee-examples: annotated examples for the use of T-Coffee

 To help increasing the proficiency in the use of T-Coffee, this
 package provides examples for input sequences and their proper
 alignment.